RNA id: XR_002475643.2


Basic Information

Item Value
RNA id XR_002475643.2
length 4691
RNA type mRNA
GC content 0.50
exon number 16
gene id LOC110537524
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 36670504 ~ 36700574 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tatgaaagtggtaggtgtggtgaagttctcGGAGCCCGAGCCTTGCACCGAGGATCAGGATAAAGATGAATCTGACAGTAATGATGAGTTTGCCATTTTGGGAAAAAGTGGACCCTTAATTTTGGCTGATCCATGGTTTCAGGGTAGTGGAAATGGAGTTAGGTGTTGTGGAATCGGTGACGGTAACCTGGAGTGGTCTTGTGAAaattgtttgtttctgttggtcCTCAGGATGTGTGGTTTCCAGTGTAGTTACTTGAAAAGCTGTCGTGGCTTTGGCTTGAAGGGGAATATACACAGCTTTATACGAGATTTGacgtcagaagagttacagggggTGTCCTGTCATTTCAGGCTGTTGGCTTGAGGTACTACTAGACAGATTTAATGGAGTAGGGTTGTGGGTTTTTAAtaagtgtagggttagatggtagtttttttttaaagtcccaAGCAAAATATAGGGGAGTTATAATCCAGTCTAGTTGGTGGcagtaatgcaacatttattggataccaACCTCCCttaaacctcatcgaagaagACAGATTGACAGGAGCCTCTTACTTCAGGTGCTCACTTCACCTCTTGCGCTCAGACTACACCAAAGACAGTTGCAGCAAAGATGGTGTGGTCGTGGTAACGTTAGCAGGGCCCATCCTCTCTGGCAGTAGGGTTTAATCCTGACTTTGTACATTTTTCTACAGATTTCTACAGTTTGTTTGAAATAACGAATATTATGTGTGTGAGCTAGAAATGTTATCTGGGTCAATGAGTATAAGAGTGTTTTGATAATATTTGGATTGGTCGAGAAAGCCACAAAGGGGGGTGTTTTGAGAGTGCCATAAAGTACTTTGCTGGCCTCTGCTCACACGTTTGGACATTATTTTCACAGGGACGTTTAATACACCTTGCTGTAGTTTCATTTGTGAACAGTTTTTAACTGGTCCCGTTAAAAAAACTTGCTCTTCCTGTTTGAAATGTGCAATTGTAGTGCTGTATTGCACCGTACATTTCAGCCAAAGACAGAACAATGAAACGTTTTAGTTACAAAAATATTAGTTTCAATCCCCTTCAAAGTTTGACCTCCTTTTATTGAGTCACGTGATCGAAGAAAACATGGCTTCTTGAATCGAGATTTGTCAATGTTTTGGTAAAAGTAGGAATCCTACCAACGAACACTGGATGTGATTAACAGTCTTTAACTGAATGATTTGTAACTTAAATTCCATGTGTCGTTATATACATAGCTAGCTAAGTAACTGTTCTACTTTCGGTTTTTCGTAATTCTCAGGAAGATGAGTGTGCAGACATCCGCGACACAAGTCGTAAGGATAGCTAACGGTAGCTAGCTAAGCTAACTTCCCGTCTATATTTGTTATCAATCACCAAATTCAACCAAGCAACATGCCTCCTCGAAAAAAGCGAGAGAACAGATACGCTGATGATGGTCCCAGGAAACGACGACGAGCAGTTGATCATGAAGAGGACAGAGTCGTCATCTCAGACAGCGACGAGGATGAAGACTTCAGACCAACATCATTAAAGGAGCATAAACGGGAGAAGGAGAGTAAAATACGATCTAACGAGATGACTGAGGAAGAGATGCTGGATCTGGCCATGAGGCTGAGTGAACAGGAGGCCAGCAACACTGCTCTCAGGCAACGACAGGAGGAGGAGACCATGAGGAAGGCCATCGCTGAAAGCCTCTACGCGGACAGACACACTCATCCCAACTCAGAATCTCTGCTGGTGGACGGGAGCCCTAACGAGAAATGTCAACGTTCCCCTCCAGAGGCAGAAAGCAGCATACAGCCCCCCAGGCGGAAGCTCTCTTACCCCAACCATGGTGTGGCTGACAGGGAGGGAGCCCACGGTGTAGGTGTTAGTGTAGGGGTTGCTAACCCAGAAACCAGCAGGAGGGGGAAAAAAGTGGCTAGTCCATTACTAGATATGCCTGACCTGTCTCAGACCCAGAAGGTCTACTCCCAGTCTTCTCCCCTCAGCCAAGCTTCCAcctccatgcctctctcttcACAGGAGGGGTCTTCTCTAAAGAACCCTTTCGGAAACCTCTCAGCCCACGTCGAATCTCAGGAATGCAAGTCCACAGAGAATGAGTCCCAACTCAGGAAGAAGTCCTCTGTATTCCCTCTCGCCACTACAGTCCCCTCAGCCAGTAAACTCATCCTGTGCCTGCATAAGCTCAGCCAGGACCTCCTAGTAGACTGTCAGGCCTCTGGGTTCCTACTATGTTCTCAAGAGAGTCCTCCAAGCGTAACTCTTTCCACAAAGTCCCAGATGTCTCAGTCTTTTCAGCCAAAGAGCCCTACATTCTCCAAAAGCCCTGTGTTCTCCAGGACAGAGAGAACTGCAGGTGGGGAACCAGGCCAAGGGAGTCCCCCTATGTTCTCTGAGACTGATTCAGGAAAAGAAGAAAAAGAGGCAAGTCCAACTTTTCCTAAAAGTGCCATGTTCTCCAGTAGTGAtacaggagaagaagagaaagcggCAAGTCCCACCTTTCCCGGAAGCCCAGTCTTCCCCAGAACTGATCAGATAAGGGACCAGGGTCCACAGAACTGCATTGAAAGTGTCTCTACATCAGAAGACCatgaggatagagacagagaggatgtgaAGAGCAGCGAATCCTCAAAGTGCCTTCCACCACGCCTCAGAACAAACCTGTCCCCGAACAAGAGACTCATGCCTATAAGGAAGACAGCTGGAGTTGCAGACAAAGTTGTTGACCAAGAGGAACGTCAGGGTGAATCCTCGCAGAGCGCTGTAAACAGGATTAGCACGCCTGCAAAGTTTGCTGCAGAAGAAGACCTTAATTCAGAGGAACTTACATTGGCTTTTGAGACTCAGCCAATGCAGGAGTTAACCAGTAATATGGCGCTACGCTGGTCAGATGATGACGAAGAGGAAGACGGTCCTGCAAAGTCGGCTCAATTGCCCAGCCCAGTCTTCCCACAAGAGAATGACCTCCCACAACCAAGCAACCAATGTCTCTCCACAAACACCAACCACCACTGTTCCCCTCCACACATACACAGCCCCTGCCTCGTCCCCAAGAAACGCACACACATCTCCGAAGACTCCGCGTGCGAGGATGGAGAGAGCCAGTCCAAGCGCATCCGGAAGAAGTTCACCTTCAAGGGCATGTATGgatctccctccccctttctccccagaCAGGCTGCAGGTAGAGGGTGCCATGATGAGGCACAAGCCAGATACCCCTCTTCCCACCAGCCCCAGGCCTCTTCCAgccacctctctccccccacagGCAGCCAGGGGGATGGGGGAGTGGTGTGCTACTATTGGGGGGTGCCTTTCTGTCCGCGAGGGCAGGACCCAGATGCCTACACGCAGGTGATCATGTCCCAGCTGGAGGTGTATGAGAAGAGCCTGAAGGAAGCCCAGAGGGGTCTGCTGAGGAAGGCAGGCTGGGGGGAGCCTGTCCTTCCTGGGCCCCCAGAGAGACCTTTTTCCAGGAGGGGACGCCCCAAGAGACACAGGGCCCCAGAAcctctggaggaagaggaggaagaagtcCAGGGAGTGAGAAACCAGCAGGaagaggttgtggaggtggtagaggatgatgaagaggagggTGAGGAAAGGGAGTGGCGGCGGTCACAGGGAGGgacggaagagggagggaggagaggaagactggAGTGGAAGGACTATCAGTCACTGTTTGTGTCCACTCCTGAAGAAGACGAAAAATCGCCCTCACCTGTATTTCATGTAGAATCCAATCAACAACAAATTCTACCTCGAAGGAGTCTTGGCCTTAGAAATGAAGAGAGAAGACCATCGCCACTGCCTGTCCCGCTGGAGAAGGAAAAGGAAGAAgatgaaaaagagggagagaagagggaggaggaagaaatAATGGGGGATGACGTGGTGGATGTCGGTGGCTTAGAAGTTCCAGGTATAAGAAATGAGACCCAACTCAGTGACGATGGCACCCAAGATCTGATGGTCACCAATCCTGCACGGCCCCAACCAGAGAGGCAGTCCCTGCCTCAGATCCAGACTTTTCTCTCATTACCCCATCCTCTGGAGCAGCATGTAGAGGGGATggaggtgaaagaggagaggaggagtggccCTGTTAGGAGTCCTGCTAGAGGAGAGGATGTGAGGGTGGAAATGGAGGAGACTGGGGAGGTACAGGGTGGGGTCTCAGAACCTGCACCCCCTCAGAGCCCCAGCATGGACTGTCCCATGTGCATGCGCCCCTTCCCCCTGACGGAGATTGAGCTGCACGCTGCCTACTGTGACGGTAGTACCGCtaacatggaggaagaggagatgatGGCTCCGAGCCAATCGCAAGTTACAGTGAAGTCTCATAGGAAGAGGACCAGAAGGGGAGAAAGAATTGGAGAGGAGCAGCCCTGTTCTTCTGGCTCTGGCAAGTAAGTAGGGCAGTGCAGGGAGAGAAGTGCTTCCTGTGTCAGCAGCTATTTCATCTCCGGGACTATGAGAAGCACGTAGAGGACTGCATCAAAAACCAAGAAGGGTCCAAGGCTGCATCCAGGGCTGCATCCAGGGCCGGAAAGAGTGGAGACTTGCTGAGTGCTTTGGACCAGACAGAGCAAAGAGATTTAGGGACTGCTGAGGCCGGACCATGTGATGCTGCCTTCAGGAGCCAACACAG

Function

GO: NA

KEGG:

id description
K20775 UIMC1, RAP80; BRCA1-A complex subunit RAP80

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1214465 lncRNA downstream 11370 36396126 ~ 36660076 (-) True G1066291
TU1214552 lncRNA downstream 101070 36513193 ~ 36570376 (-) True LOC110537521
TU1214513 lncRNA downstream 198069 36467498 ~ 36473377 (-) True G1066335
TU1214516 lncRNA downstream 221636 36448196 ~ 36449810 (-) True G1066338
TU1214506 lncRNA downstream 226965 36414086 ~ 36444481 (-) True G1066331
TU1214677 lncRNA upstream 6874 36707448 ~ 36708880 (-) False LOC110537525
TU1214682 lncRNA upstream 6874 36707448 ~ 36708693 (-) False LOC110537525
TU1214674 lncRNA upstream 6952 36707526 ~ 36708880 (-) False LOC110537525
TU1214675 lncRNA upstream 6952 36707526 ~ 36708693 (-) False LOC110537525
TU1214678 lncRNA upstream 6952 36707526 ~ 36709032 (-) False LOC110537525
XM_021623628.2 mRNA downstream 16797 36645069 ~ 36654649 (-) True LOC110537523
XM_021623627.2 mRNA downstream 30313 36629759 ~ 36641133 (-) True LOC110537522
XM_036937477.1 mRNA downstream 50831 36513193 ~ 36620615 (-) False LOC110537521
XR_002475644.2 mRNA upstream 6945 36707519 ~ 36708969 (-) False LOC110537525
XM_021623634.2 mRNA upstream 69674 36770248 ~ 36789915 (-) True fgfr4
XM_036936704.1 mRNA upstream 214237 36914811 ~ 36921174 (-) False rab24
XM_036936706.1 mRNA upstream 214237 36914811 ~ 36921183 (-) False rab24
NM_001124373.2 mRNA upstream 217251 36917825 ~ 36920035 (-) True rab24
TU1214327 other downstream 571972 36099030 ~ 36099474 (-) True G1066163
TU1214216 other downstream 731875 35939243 ~ 35939571 (-) True G1066054
TU1214124 other downstream 861052 35792355 ~ 35810394 (-) True G1065969
TU1212981 other downstream 1186942 35476837 ~ 35484504 (-) True G1064912
TU1212669 other downstream 1410912 35219535 ~ 35260534 (-) True LOC110537509
TU1215682 other upstream 208857 36909431 ~ 36912757 (-) True G1067390
TU1215723 other upstream 236745 36937319 ~ 36937979 (-) True G1067426
TU1215774 other upstream 319427 37020001 ~ 37030684 (-) True LOC110537534
TU1216092 other upstream 805306 37505880 ~ 37507144 (-) True LOC110537540
TU1216102 other upstream 902591 37603165 ~ 37607015 (-) False LOC110537546

Expression Profile