RNA id: TU1214674


Basic Information

Item Value
RNA id TU1214674
length 949
lncRNA type sense_over
GC content 0.45
exon number 2
gene id LOC110537525
representative False

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 36707448 ~ 36709032 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTTGACTGCTGTTCGTGCACACTACATTTTGTTCTGGAGGCCAGCCGAAGTTCGGGAGCCGAAGTATATGCCCCTTCGTCCTTGATTGGTCAACTGTAAGGGTGACGTAAGTTTATTCTTCTTCAGCCCGAAACTCATAGGTGGCGGCAACACACCCGGTGTAGTCTACCATACAACTTTAAAGAAGAAGAAGCCCTAAACTCAGTGTGTATTCAACATGGCGAACAACAACTTCAagcataaaaaacaacaacaacttcaAGCATCGATTGACCGAGAAGGTACAGAAGTACCTTAACCAGTACAATTATAGCCTTGCATTATATAAAGAACAGCATGTAAATGTAAATTAATGGAGGGTGATTGCGGAAACGCTGGGGTCCGATCCAACCACTTGTTTGGAAAAAGTGGGGTATGGTTCGCAACAAGTTTGTCAAGGCAAAGAAAAGAAACAAGGGCCACAGTGGAAATGCTTGTGGAAAAGCTACTACAGAAATGTTGCTGCTGGCTTGTTCAGCACGGGAAGACTGAAAGCAACATCATGTCTTCACCAAAGGATGAGAGGCACAAACACCAGTGAATGGAGACATCACCTGGTTTTGTTCTCTGCGCCCCAGCACTGCCTGTTCACCGGCCCCAAACACTACCTCTCCAGACACTCTTAATTCCCTCTCCGCAGGGCCCTGGCACCTACAGCTGACTTCATGGATGAACTCTTGCCAAAACTCTGGGAGAAACTTGATCACCAGCTGTAAGACAAGAGGAGGATGTAGTCTGAACTACTGGGACTACAGTGAAATTAAGTTTGGTTGTTGTTCAGACATCTCAGAAGTCAGACACATTTGTTTCCATAGACACTTGTTTACATGTCTGTTCTCAGCAGACACTTTTGTACTGTGGCTTACTTTCAGAGCCCAGAAGCAAGAATAAAGGTTGATTTATGTGTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1214465 lncRNA downstream 47450 36396126 ~ 36660076 (-) True G1066291
TU1214552 lncRNA downstream 137150 36513193 ~ 36570376 (-) True LOC110537521
TU1214513 lncRNA downstream 234149 36467498 ~ 36473377 (-) True G1066335
TU1214516 lncRNA downstream 257716 36448196 ~ 36449810 (-) True G1066338
TU1214506 lncRNA downstream 263045 36414086 ~ 36444481 (-) True G1066331
TU1214789 lncRNA upstream 144759 36853639 ~ 36853868 (-) True G1066587
TU1214790 lncRNA upstream 145570 36854450 ~ 36854703 (-) True G1066588
TU1214795 lncRNA upstream 151403 36860283 ~ 36860562 (-) True G1066593
TU1215692 lncRNA upstream 173445 36882325 ~ 36882600 (-) True G1067400
TU1215712 lncRNA upstream 197824 36906704 ~ 36907137 (-) True G1067417
XR_002475643.2 mRNA downstream 6952 36671446 ~ 36700574 (-) True LOC110537524
XM_021623630.2 mRNA downstream 6955 36670504 ~ 36700571 (-) False LOC110537524
XM_021623629.2 mRNA downstream 6960 36670504 ~ 36700566 (-) False LOC110537524
XM_021623628.2 mRNA downstream 52877 36645069 ~ 36654649 (-) True LOC110537523
XM_021623627.2 mRNA downstream 66393 36629759 ~ 36641133 (-) True LOC110537522
XM_021623634.2 mRNA upstream 61368 36770248 ~ 36789915 (-) True fgfr4
XM_036936704.1 mRNA upstream 205931 36914811 ~ 36921174 (-) False rab24
XM_036936706.1 mRNA upstream 205931 36914811 ~ 36921183 (-) False rab24
NM_001124373.2 mRNA upstream 208945 36917825 ~ 36920035 (-) True rab24
trnal-caa-105 mRNA upstream 227340 36936220 ~ 36936330 (-) True trnal-caa-105
TU1214327 other downstream 608052 36099030 ~ 36099474 (-) True G1066163
TU1214216 other downstream 767955 35939243 ~ 35939571 (-) True G1066054
TU1214124 other downstream 897132 35792355 ~ 35810394 (-) True G1065969
TU1212981 other downstream 1223022 35476837 ~ 35484504 (-) True G1064912
TU1212669 other downstream 1446992 35219535 ~ 35260534 (-) True LOC110537509
TU1215682 other upstream 200551 36909431 ~ 36912757 (-) True G1067390
TU1215723 other upstream 228439 36937319 ~ 36937979 (-) True G1067426
TU1215774 other upstream 311121 37020001 ~ 37030684 (-) True LOC110537534
TU1216092 other upstream 797000 37505880 ~ 37507144 (-) True LOC110537540
TU1216102 other upstream 894285 37603165 ~ 37607015 (-) False LOC110537546

Expression Profile