RNA id: XM_021623644.2


Basic Information

Item Value
RNA id XM_021623644.2
length 2553
RNA type mRNA
GC content 0.45
exon number 7
gene id LOC110537534
representative False

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 37019987 ~ 37039930 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cggcatgcacgaAAATTTTGCAAACGCAATGATACCAAAGAAGGACGTTGGTAGGGTAGCCAGCTAATGTCAACTTTATAAAGTTTAGCTACATAGCTTGCTAGTTCCCTACGCGTTTATCTAAATATCTATAGTTTTTATTGATAAACTGTCTAGCCACGTTGTTAAAGATAATGTCAAATTGCTGCTGACAACTTCGTGATAGTTGACCAACTTATTTGGCTATCAGCTTTACTCCAGCTAACTTTAGCCTCTAGCTAGGTCGTTTGCATTCTAACTGacaagctagctagcaaagctACTCGCTAATTTAGCTGGCCAAAGATCTCTGCCCTGCAAGTTACTCCTCAGCAGCTGCCATGGCCTCTTCGGAGTTTCGGGGTGACGTTTCCCAGGTGCGCAGCGGCCGTGACACCATCTTCTCTGAGGCCATCAACCAGAAGATGCGTGTCCCCGACCGGCTGAGAGTGGGGCCAGGCATGGGacagagatgggaagaggagaggcaggagtGTGCTGACTGTCCCGCTTCTTACAGCATGCACATCCCAGACAGGCTGTCTCTCACAGATGCCCCGGACATGAGCCCCCATCCACTGTTCACGTCATCCAAGCAAGGCTCAGCCCTCCCGCTGGGGCCTGCATGGGAGGCACAGCAGCACAGTGCCTGGAACAAAGAAAGAGACCCCTACATGAGGGAACCAGTGCAGAGTCCACTGCGTAGGTCCTACAGTGACCAGGCTTTTGGCAGGAGCAACCCTGGCACCCCCACCTGCAAACAGGCACCGCACACCCCTATCTCTTGCGGCGGTGCAGGATGCCTCCCTCAGCGctcctctactgctgctgcagacacccTGCCCATGCCCCTGGGGCTCCCTGCCACCCTACCCAGCCTCCTGTCCCCACAGACCATGCTTCAGGCTGCCAAGGAACTGGGCCAGCAGGCCTCACAGTGCCTTCTGCAGACTGTCACTCAGAAATACAGTGCCATGCGGGACTCCTGGATGAGCCCAGATGAGGGATGTGCAGCTGTGGAGTTCATCGTACTTAGGAGACAGGTGGTGAAGATGAGTCGTCGTCTGGCGGGTCTGGAGAAGCAGAACGCTGAACGCAGACAGACTGAGCTGGTGCTCTTCTCCCTGctcctttctgcctgcctgctcAACGGATGGCTCTGGATACGCAGATAACAGACACACGTCACTCAAATAGCCCACTCATCTGCTCTGCAACGCTACTTTGCTCAACTCTGCATTACACATCCACTCAGCTGGGTAGTTTGTCAGTGCACTTATTCTTACACACATGTTGGTGTTAGATGTTGAGCATGTATAGATCGCAATGGTCCATTTCCTTTCTTCCAAGGCCAGGGCCCAGATTCACTAAACACTTCTTACGCAAAAACTTTAGGTTCTTAAGAAGAAAAATAAGTTCATAAGATAGTTTAAGTGCAATTCCTCAACAATATCTTCTTACAAATCTTCATTTCTTGGCAACTTATCTAGCTAGCAATGCCAATCATGTTATCATGATTACTGCTCTAAAACATGTTATTGGGTTTAAAATTATCAATACTGAAACTTTCAGATGAAGTTTGTGTGAATTAAACTGCTTTCATGAGCTTTTTCTCGCACTGCCAAGAGTTTAGCTAACTTGGAATTAAGAACCAAATTTCTTAAGGAGAAAGGGCAAGAAAATGTCCAATAACCTTTTGAGGAATAACAACTTTGCTTAACTTTCTTCAAGTCTATAGTTAAGTTCTAGTtaaggttttgtgaatctgggcccaggAGAGGAAGCTATTTCGGCAACTGTTAAGGTAGGGCCTTAGGACTATGATGATAAAACGATGTTGAGCATTAGTGGTGTGCATAGGTCACAAATATGGACTAAGTTGATTGTCAAGATGGATGCTGGCATATTTCAACATTATCAGGGATTGATCCATTTCATGTTTGCCTAAAGGATTGGCCATCTCTGTGACTTGAACAGCTAGTGCTTACCACGGTTGGAGGTGGTGATAGGAAATGATAGTGTTACTGCGGAGGCTTCTATATTGTTGTCGTTGAGATGGATAATCAGATTTACGTCATAGGTCTGTCAAAACACAGCTTGTGTAAACTTAACATTTCAATCTATTTGTTAACCACTGGTGGTGGAATGCCATGAGTCAGTTGGTAACTGGTCCAAAGTATCTAGTATACTATTATGGTATGATTTACTTGGAACATTTCAGACTTAGAGAAGCCTAAATTGTAATCCGTTTCAGACAGTACATGTGTAATAAGGTCCTTCTGTAAGGCCTCTATTTAATCAAGACTAAAGTGAGACATGTCTGCGTTTGAATGCCTGtgacatgaagtgctttgaagttGGCTGCCTCAGTGGCTTTGATCTTTTCCAGACCAGTTTATAATATGAAATGATATGTTTCTCAGAAGTCAAATGACATTAACCATGAATGTAAATTGAACACTAATTTATTACATGGGGTTTCTTGTTCTTTTTTGAAGTTGTACTGGGTTTACAATAAATTAAATATAATGTTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1215739 lncRNA downstream 47016 36972665 ~ 36972971 (-) True G1067441
TU1215736 lncRNA downstream 50666 36969090 ~ 36969321 (-) True G1067438
TU1215733 lncRNA downstream 53415 36966239 ~ 36966572 (-) True G1067435
TU1215725 lncRNA downstream 54804 36963572 ~ 36965183 (-) True G1067427
TU1215730 lncRNA downstream 69630 36949523 ~ 36950357 (-) True G1067432
TU1215829 lncRNA upstream 80473 37120403 ~ 37122215 (-) True G1067511
TU1215851 lncRNA upstream 89450 37129380 ~ 37133553 (-) True G1067532
TU1215859 lncRNA upstream 104193 37144123 ~ 37145885 (-) True G1067539
TU1215975 lncRNA upstream 264702 37304632 ~ 37310152 (-) True G1067651
TU1215979 lncRNA upstream 273052 37312982 ~ 37313292 (-) True G1067654
trnal-caa-105 mRNA downstream 83657 36936220 ~ 36936330 (-) True trnal-caa-105
XM_036936706.1 mRNA downstream 98804 36914811 ~ 36921183 (-) False rab24
XM_036936704.1 mRNA downstream 98813 36914811 ~ 36921174 (-) False rab24
NM_001124373.2 mRNA downstream 99952 36917825 ~ 36920035 (-) True rab24
XM_021623634.2 mRNA downstream 230072 36770248 ~ 36789915 (-) True fgfr4
NM_001124678.1 mRNA upstream 91855 37131785 ~ 37138071 (-) True LOC100136717
XM_021623651.2 mRNA upstream 405956 37445886 ~ 37448950 (-) True LOC110537538
XR_005034960.1 mRNA upstream 465276 37505206 ~ 37507238 (-) False LOC110537540
XM_036937505.1 mRNA upstream 563228 37603158 ~ 37667366 (-) False LOC110537546
LOC110539142 mRNA upstream 634731 37674661 ~ 37678290 (-) False LOC110539142
TU1215723 other downstream 82008 36937319 ~ 36937979 (-) True G1067426
TU1215682 other downstream 107230 36909431 ~ 36912757 (-) True G1067390
TU1214327 other downstream 920513 36099030 ~ 36099474 (-) True G1066163
TU1214216 other downstream 1080416 35939243 ~ 35939571 (-) True G1066054
TU1214124 other downstream 1209593 35792355 ~ 35810394 (-) True G1065969
TU1216092 other upstream 465950 37505880 ~ 37507144 (-) True LOC110537540
TU1216102 other upstream 563235 37603165 ~ 37607015 (-) False LOC110537546
TU1216103 other upstream 563235 37603165 ~ 37607015 (-) False LOC110537546
TU1216105 other upstream 574238 37614168 ~ 37667254 (-) True LOC110537546
TU1216260 other upstream 632252 37672182 ~ 37706371 (-) True LOC110539142

Expression Profile