RNA id: XR_005034960.1



Basic Information


Item Value
RNA id XR_005034960.1
length 1459
RNA type mRNA
GC content 0.39
exon number 3
gene id LOC110537540
representative False

Chromosome Information


Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 37505206 ~ 37507238 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TTCGCTGCCAGCCGTGGGCCTATTGCCTACTTTCGGTTTCACATTCACCAGGTTTTTGCGCAAGTACATGTGAGGAAAATCAGGAAGTATGTACGTCAAGCCTACTACTAGGGTGCGGTTCCGGTGGttagaaaagtgtttattttctcAACTATACATGTTAAAGTTAGGACAAGCTGATCGTAGATCTGCAATAAACCCACGGTTTGCAACGAACAATAAGGTTGGAACTACAAATATTTTAGCAGGATAAACCAGTGTGAAGATCATCAAGAAAGTTACATCATACTTTTGTTCTACCCTTGGCAGCGATGGCAGCTCAGCAGCTGCATGGATTGAGGACCAAATTCATTGAGAAGGTGTCAAAGGCCGTTCTAGATCAACTGATGGATGACCTCTTAGAAGACATGGTGCTGAACGATGGAGAAATCGAGGAGATAAAGGAGAACAACATGCTGAGGGCGGATAAGGCTCGCCAACTTATTGATAGTGTGCGCAGGAAAGGCAACACAGCCAGTGAGAAGTTTCTCATACGACTCCAGGAAAGAGACAAAAATGTCTACAGTGAGCTTAACCCCCAGGTGTAGCCAATATGGATGAGAGAAAAAGTGTCTGACTCTTGACCCTCTCTTGAAAGACCTGGAGGTGCCACCCAGAGAGCCTCTTACATTCCTTTTGACCAAGGCCTCATAATTAAATGTCTTAATGTACggtattttttaaacaaatgaaATATCTATATTTTTCACAAGAATGTTTAATAtagaataaatatatatacaaactaaatatatatatttttacaatgtTTTTCTACTGAATTTTTTAAATCTAATAAATACTTTATTTcctgttaatttttttttttatcattcttGCCTTTTATCCTAGCATCAAATATTAGATGAATCGGCTAGGTGAGCCCCAAACATAACTGATTACAGCGAATGCCACACTAACAAAGCACTTCCCTTACATGCTTCTTGCAGTGGAAAAACAAAATACATACCTTATACCTCAGATTCTCCTGGCTAGTGGATTTGATTAGATAGCATCATCAGTGTGTGCAGTGAAGTGGGTTGAGGCTGATCCCCTCAAAGATCTGCTGGGTACAGTATAGCGACTCTGTACCGGCTGATTTCCCACCAAGGCCTTCTGTGTTTTTGTTGACCTAATTATTCAGTGCAGACAACATCCCTCTAGAGGAAATGTTCCCCTGTGTTCCTAGCCAGATGGAATGTCCTGTAATCTCTTTAAAAACAGTAAGCGTATCAAACAATGAATTAACAAACTAGTAAATAGCAAAAAATATGATACCATAGGTGATCAAATATGTGTGTATTTTCACTTAGCATTGCACAGTAACTGCAGATCTAACATTGAATTGATCTGACAGTGCTCTATTCCAATGAATAGTTATTTCCCAACAGTTCAATAAAAATGAGTTGCTGCACACTGC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1216005 lncRNA downstream 60891 37443813 ~ 37444315 (-) True G1067679
TU1216059 lncRNA downstream 64869 37440055 ~ 37440337 (-) True G1067733
TU1216042 lncRNA downstream 90898 37413952 ~ 37414308 (-) True G1067716
TU1216034 lncRNA downstream 95044 37407328 ~ 37410162 (-) True G1067708
TU1215979 lncRNA downstream 191914 37312982 ~ 37313292 (-) True G1067654
TU1216120 lncRNA upstream 12557 37519795 ~ 37522584 (-) False G1067783
TU1216121 lncRNA upstream 12557 37519795 ~ 37536856 (-) True G1067783
TU1216140 lncRNA upstream 50522 37557760 ~ 37558393 (-) True G1067792
TU1216135 lncRNA upstream 51333 37558571 ~ 37559459 (-) False G1067791
TU1216136 lncRNA upstream 51526 37558764 ~ 37559459 (-) False G1067791
XM_021623651.2 mRNA downstream 56256 37445886 ~ 37448950 (-) True LOC110537538
NM_001124678.1 mRNA downstream 367135 37131785 ~ 37138071 (-) True LOC100136717
XM_021623642.2 mRNA downstream 465276 37019987 ~ 37039930 (-) False LOC110537534
XM_021623644.2 mRNA downstream 465276 37019987 ~ 37039930 (-) False LOC110537534
XM_021623646.2 mRNA downstream 465276 37019987 ~ 37039930 (-) False LOC110537534
XM_036937505.1 mRNA upstream 95920 37603158 ~ 37667366 (-) False LOC110537546
LOC110539142 mRNA upstream 167423 37674661 ~ 37678290 (-) False LOC110539142
XR_005034968.1 mRNA upstream 206189 37713427 ~ 37740454 (-) False ska2
XM_021623670.2 mRNA upstream 207625 37714863 ~ 37740454 (-) False ska2
XM_036939654.1 mRNA upstream 270749 37777987 ~ 37790177 (-) True LOC110539143
TU1215774 other downstream 474522 37020001 ~ 37030684 (-) True LOC110537534
TU1215723 other downstream 567227 36937319 ~ 36937979 (-) True G1067426
TU1215682 other downstream 592449 36909431 ~ 36912757 (-) True G1067390
TU1214327 other downstream 1405732 36099030 ~ 36099474 (-) True G1066163
TU1214216 other downstream 1565635 35939243 ~ 35939571 (-) True G1066054
TU1216102 other upstream 95927 37603165 ~ 37607015 (-) False LOC110537546
TU1216103 other upstream 95927 37603165 ~ 37607015 (-) False LOC110537546
TU1216105 other upstream 106930 37614168 ~ 37667254 (-) True LOC110537546
TU1216260 other upstream 164944 37672182 ~ 37706371 (-) True LOC110539142
TU1217947 other upstream 1534282 39041520 ~ 39072472 (-) True LOC110537579

Expression Profile