RNA id: XM_021623673.2


Basic Information

Item Value
RNA id XM_021623673.2
length 4961
RNA type mRNA
GC content 0.49
exon number 21
gene id LOC110537549
representative False

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 37802596 ~ 37886734 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGTAAACATAGTCCGCCTATTTCCGGTCGAAATGAACTGTTTTCCGGTGTTACGCCTTTCTGGCTCCGATACCCTTCACTCATTTTGTTTTTCCGGGAGTGCTCCATCTTTCTACGGTTAGCTATCTCTCTGCGGCAATCAAGGAGCTAAAACATCTTTCCAGATCTGGAATAGCTTCACTCACCCTAGCGACGCAGTTTCTTATTGAAATTACCTCTCAAAACAAATTTGAAGACCAACAATGACTGACTCAAAATATTTTACAACAAATAAAAAAGGGGAGATATTTGAGCTGAAGGCAGAGCTTAACAatgagaagaaggagaagaggaaggaggcGGTGAAGAAGGTCATTGCGGCTATGACTGTGGGCAAGGATGTCAGCTCCCTCTTCCCAGACGTGGTGAACTGCATGCAGACAGACAACCTGGAGCTGAAAAAGCTGGTCTACCTGTACCTGATGAACTATGCTAAGAGCCAGCCTGACATGGCCATCATGGCTGTCAACAGCTTTGTCAAGgacTGTGAGGACCCTAACCCCCTGATCCGGGCCCTGGCCGTACGCACCATGGGCTGCATCCGCGTGGACAAGATCACAGAGTACCTGTGTGAGCCGCTGAGGAAGTGTCTAAAGGACGAGGACCCATACGTGAGGAAGACGGCAGCGGTGTGTGTGGCAAAGCTCCATGACATCAATGCCCAGATGGTGGAGGACCAGGGTTTCCTGGATTCCCTCAGGGACCTCATCGCCGACTCCAACCCCATGGTGGTGGCCAACGCAGTGGCAGCTCTGTCTGAGATCAGTGAGTCCCACCCCAACAGCAACCTGCTGGACCTCAACCCCCAGAACATCAACAAGCTTCTGACGGCCCTCAATGAGTGCACTGAGTGGGGCCAGATCTTCATCTTGGACTGCCTGTCCAACTACAACCCCAAAGACGAGCGCGAGGCCCAGAGCATCTGCGAGCGTGTCACTCCCCGTCTCTCCCATGCCAACTCGGCGGTGGTGCTGTCGGCCGTTAAGGTGCTGATGAAGTTCCTGGAGCTTCTGCCCAAGGAGTCGGACTACTACAACACCCTGCTGAAGAAGCTGTCCCCACCACTGGTCACCCTGCTCTCTGGGGAGCCAGAGGTCCAGTATGTGGCCCTCAGGAACATCAACCTCATCGTCCAGAAAAGGCCAGAGATTCTGAAGCAGGAGATCAAGGTGTTCTTTGTCAAGTACAACGACCCCATCTACGTCAAATTGGAGAAGCTGGATATCATGATTCGCCTGGCCTCCCAGGCCAACATAGCCCAGGTGTTGGCTGAGCTGAAGGAGTACGCCACCGAGGTGGATGTTGACTTTGTGCGTAAGGCAGTGAGAGCCATCGGACGCTGTGCCATCAAAGTAGAGCAATCTGCTGAGCGCTGTGTGAGCACCCTGCTGGACCTCATCCAGACCAAAGTCAACTATGTGGTGCAGGAGGCCATTGTGGTCATCAGGGACATCTTCCGCAAATACCCCAACAAGTATGAGAGCATCATCGCCACGCTGTGTGAGAACCTGGACTCTCTGGACGAGCCGGATGCTCGCGCCGCCATGATCTGGATCGTGGGAGAGTACGCTGAGAGGATCGACAACGCTGACGAGTTGCTGGAGAGTTTCCTGGAGGGCTTCCACGACGAGAGCACCCAGGTCCAGCTCACTCTTCTGACGGCCATCGTCAAACTATTCCTCAAGAAACCCTCTGAGACTCAGGAGCTGGTGCAGCAGGTCCTTAGTCTGGCCACACAgGACTCCGACAACCCTGACCTACGTGACAGGGGTTACATCTACTGGCGCCTGCTGTCCACCGACCCAGTGACTGCCAAGGAGGTGGTCTTGTCCGAGAAGCCCCTGATCTCGGAGGAGACGGACCTGATTGAGCCCACCCTGCTGGATGAACTCATCTGCCACATTGGCTCCCTGGCCTCCGTCTACCACAAGCCCCCAAATGCCTTTGTGGAGGGTAGTCATGGCATCCACCGCAAGCACCTGCCCATCCAGCACGGCAGCATTGATACAGGCGAGAGCCCGGTGAGCGCAGGGCCAGCGGCCCCCATTGAACAGGCCCAGTCAGTTATCCCCTCCCAGGGTGACCTGCTGGGAGACCTGCTCAACCTGGACCTGGGTCCCCCCGTCAACGTGCCCCAGCAGTCCTCCATGCAGATGGGTGCTGTCGACCTGCTGGGCGGAGGCCTCGACAGCCTGgtGGGACAGAACTTTATCCCCTCGTCAGTTCCCAACACATTCGCCCCATCGCCCACTCCTGCAGTGCTCAGCAGTGGCCTCAACGACCTGTTTGAGCTCTCCACAGGCATGGCCATCACCACAGGAGGCTATGTCACCCCAAAGTCTATATGGCTGCCTGCAGTGAAAGCTAAAGGGCTAGAGATCTCAGGCACATTCTCACGCCGACAGGGCCAAATGTACATGGACATGACCTTCACCAACAAGGCCCTGCAGCACATGACCGACTTTGCTATCCAGTTCAACAAGAACAGTTTCGGAGTGATCCCCACCACCCCTCTGCCCATCCACACTCCACTGATGCCCAGCCAGAGTATTGAAGTTTCCCTGCCTCTCAACACCATTGGGCCAGTCATGAAGATGGACCCACTGAACAACCTACAGGTGGCTGTGAAGAACAACATTGATGTTTTCTACTTCAGTGGGCTTATCCCACTCAACATTTTCTTTGTGGAGGACGGTAAAATGGAGCGACAGGTGTTCCTGGCAACCTGGAAAGACATCCCCAATGAGAACGAACTGCAGTACCAGATCAAGGAGTGCCACTTAAACGCAGACACTGTGTCGGGGAAGCTGCAGAACGACAACATTTACACCATCGCTAAGAGGAACGTGGAGGGCCAGGACATGCTCTACCAGTCACTCAAGCTCACCAATGGCATCTGGATCCTGGCTGAGCTCCGCATCCAACCCGGCAACCCCAACTACACGCTGTCCTTGAAGTGCCGGGCTCCTGAGGTGACCCAGTATGTCTACCAGGTGTACGACTCAGTCCTGAAGAACTGAACCTTCCGTCCGTCCACTCACCACCCTCCACTCCACACCTCGCCCCATGAACAAACAGCAGCTGTTAGCGTTTTAGTCATGTATTATTCCTTTCCCTCATTCCTCTCCACCATCTTTACCTCCATGGGAGAATGTGACATCCCCACTCCATCCTAAACTAAATGTCTTAATGTCGTAAAACGTGGTTGATGGTGAAGCTctccaaaaagaagaagaaatctTTCATATTCACTAAGCCATCGGTCCCACCTCTTTGTACTGTATTGCCAATATTGGAAAGTGTAATATCATATATGTTTTGTGTCTATTTTTTATGCTTGTTCTGCTTCCATGGTACTTTTCCTACTTTCCCAACCGTTCCACAAGAGATACTTGATTTGGTGCCATCTTCCAGGCCTTACTGGGGCGGACGTTTCCAGTTGAACCAGTTGCTACAGTATGTCTCCATGATGCAACAAGTACCATTCTGGGCCAAGATGGCAGTAGTGAGAGGCAAGAGCGGGAACATGAAATTGTCAGGCTGCCATAATTTTAATGCATTAGTGGATGTCATTCTCTACTCATTTTAGTAACCACTATGCTGACCACTATTTATGATGGCTATTATTACTTGTTTGCTCCAGTCTGTGCCATTGTTCTTTTTTATTGATACTTGCAGGTAGCTGATAATTTCAAGCTTCTCAACGCTTTTCTGATTGCTTGACCTGCAGCAGCCATCAAACACAGTTATAGTCATTCCTAGATTTCCAATAATCCATGTCCCTTTGCTGATTTTGTGTTGCAGTATTAATTATTATGCCAATTGTGAGTGTGGCATGAGTTGTCCATTCTGTTATACTGTAATCATTTTATGTTGATTCCAATGAgattatttgttattctttatATGTAAGATAGTTATTGATATTCCATTTGCAGCTGTTCCTCCAAACaaaactaaaccctaaaccttgGGTCAAACCCAAAGCCAGGGTCAATATCAGTTGCTATTTTCATAGTAGATAACAACCCCATACTGTCATCAATTACATACCTACTGTACGTGTTTGTGGTGTTCTGCAGTTAAAATCACCTCCCTGGCATTGCTTTATCCTAAACATGGAGGCTATGTAGTGCTTGCAGGCCACCTAATGACCAGGGTCCCCCTTCTATGATTATACTGTGCAGTGACGTGGTGTAGTTTGTAGACCTAAAGTTCTGTACGACTAATGAAAGATGATTATTATATTACTACCTTGTAACCCAGAATTAGTGTGCTTGTATTCCATAACAGAAAAACATTGGCGCTATATTCCAGTTATGTACCAAGTCCTTGTGGAAGTTGTATTAATAAATGTATACAAACTGATGTGATTTTAATATGCCATATCTCTATGACTAACCATGCTTGCTAGACCTCTGGTAGTTGAGCTCAAACATTGTTGATCATTTTATTAATTATttttattgaagtcaatgtaaagTGCAGTCTGAAGGGTACCAATTGTGTTTGTGACTTCAGCTTTCTAATTTTATTGTTGCCACGTGCTGATGTGCCTGTAAACCTGCATGGAAGCGGTGTCCATTGCTCCCCAAAAAATATTTGCTGTCTGTTTTCCTCATTCTCAAAACAACACTTGGCTACAGGGGATGGTCTTATCTTTGCCCAGAATTTGACTGCATGTATCCCAAGCAAGATATTATAAAGGTGTATTTGGGTGTAGCTTTCCCATCCAGAACTTGTTTGAGAATAAATATTTAATGTACTTATAAGCCCAGCAACCAGGAATAAGCCTAAAGAACGGCTGTAGTAAGAAGTAATATAATTATTCTCCTCAAGCTAACCTATTGATACTGCATCACTCCTCGTCGTCAAGGTGGCACTGTATCCTCTATTTCAATAAAATGTCCGGTATAAACGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1216311 lncRNA downstream 26213 37774312 ~ 37776383 (-) True G1067924
TU1216234 lncRNA downstream 42475 37758954 ~ 37760121 (-) False G1067872
TU1216235 lncRNA downstream 42475 37758954 ~ 37760121 (-) True G1067872
TU1216240 lncRNA downstream 88163 37713943 ~ 37714433 (-) True G1067876
TU1216238 lncRNA downstream 88794 37712908 ~ 37713802 (-) True ska2
TU1216427 lncRNA upstream 80762 37948363 ~ 37948581 (-) True G1068021
TU1216492 lncRNA upstream 188783 38056384 ~ 38056616 (-) True G1068082
TU1216502 lncRNA upstream 205254 38072855 ~ 38073098 (-) True G1068091
TU1216503 lncRNA upstream 207255 38074856 ~ 38075215 (-) True G1068092
TU1216504 lncRNA upstream 211539 38079140 ~ 38079979 (-) True G1068093
XM_036939654.1 mRNA downstream 12419 37777987 ~ 37790177 (-) True LOC110539143
XR_005034968.1 mRNA downstream 62142 37713427 ~ 37740454 (-) False ska2
XM_021623670.2 mRNA downstream 62142 37714863 ~ 37740454 (-) False ska2
LOC110539142 mRNA downstream 124306 37674661 ~ 37678290 (-) False LOC110539142
XM_036937505.1 mRNA downstream 135230 37603158 ~ 37667366 (-) False LOC110537546
XR_005035330.1 mRNA upstream 18711 37886312 ~ 37886407 (-) True LOC118937921
XM_021623674.2 mRNA upstream 19842 37887443 ~ 37891672 (-) False LOC110537550
XM_021623675.2 mRNA upstream 19842 37887443 ~ 37891682 (-) True LOC110537550
XM_021623677.2 mRNA upstream 32252 37899853 ~ 37922703 (-) True LOC110537551
NM_001160575.2 mRNA upstream 68625 37936226 ~ 37938429 (-) True polr2j
TU1216260 other downstream 96225 37672182 ~ 37706371 (-) True LOC110539142
TU1216105 other downstream 135342 37614168 ~ 37667254 (-) True LOC110537546
TU1216102 other downstream 195581 37603165 ~ 37607015 (-) False LOC110537546
TU1216103 other downstream 195581 37603165 ~ 37607015 (-) False LOC110537546
TU1216092 other downstream 295452 37505880 ~ 37507144 (-) True LOC110537540
TU1217947 other upstream 1173919 39041520 ~ 39072472 (-) True LOC110537579
TU1217986 other upstream 1240699 39108300 ~ 39108962 (-) True G1069456
TU1218083 other upstream 1468503 39336104 ~ 39337974 (-) True fkbp6
TU1220392 other upstream 3171265 41038866 ~ 41039931 (-) True G1071725
TU1221758 other upstream 4178262 42045863 ~ 42062632 (-) True G1073009

Expression Profile