RNA id: XM_021623704.2


Basic Information

Item Value
RNA id XM_021623704.2
length 2042
RNA type mRNA
GC content 0.47
exon number 2
gene id LOC110537566
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 38431429 ~ 38434087 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTTGTCCCACACTTGAAATAAAAGCTTACCTACAGGTAGCCAAGAACTCATTGAATAAgcttttttccttctctctcctttttgtTCTCACAAAATGTCCTAAATATCATTGTGCCAAAGAGGACAAAGAGGAGAGGACATTGTGGAACTCTCAAGAAGTTTTTTTTACAGCAGGTTCACATTGCAGATTATAACTACTGAGAGCAAATGAAGCCACACCTGAGAAGGCATCAACACTGAACTCCCACTGCTTGCAATGCAAATAGGGTGACAACAAAGTGGAAACTACAGAGAACACACTTAAGACCAAGATGACCACCAAGAAGGCAGATGTCCAACGGAGGATCGTCTCCAAGAATGGACACAACCAAGTGCGCATTGACAACGTGGAGGGCATGGTGAAGATCTACCTCCATGACATCTGGACCACGGTGGTGGACATGAAGTGGCGCTATAAgctcaccctcttctcctccactttcaTAATGACCTGGTTCCTCTTTGGTGTCATCTTCtactttattggcatgggcaaCGGTGACTTCGAGGGTGAGTTGCTGTCCAACCACACGCCCTGTGTCATGAACGTCGCAACCCTAACCGGTGCCTTCCTCTTTTCCCTGGAGTCACAGACCACCATTGGCTACGGCTTCCGCTACATCACCGACGAGTGTCCGCTGGCCATCTTCGTCCTGCTGGTCCAGCTGGTCACCACAGGCCTGGCTGAGATCTTTGTAACTGGGGCCTTTCTGGCCAAGCTGGCGCGACCCAAAAAGCGGGCTGAGACCATCAAGTTCAGCCAGTTGGCAGTGATCTGCCGCCACAATGGTAAAGTATGTCTGATGGTGCGTGTGGCCAACTTGAGGAAGAGCCTGCTGATCCAGTGCCAGCTGATGGGCAAGCTGCTCTCACCCAATGTGACTGAGGAGGGCGAGAAGACTCTGATCCGCCAGACGGCTGTGGACTTCTACATAGACTCGTGCGGGGAGTGCCCCTTCCTAATCCTGCCCCTCACATTCTACCACGTGCTGGATGAGAGTAGCCCCCTGGCGGGGCTGACCGCCGAGAGGTTGCGGACGCGTGACTTTGAGCTGCTGGTCACCCTTAATGCCACCATGGAGTCCACGGCAGCCACTTGTCAGAGCCGCACCTCATACGTTCCCCAGGAGATCCTGTGGGACTACAAGTTCAAGCCTGTGCTCTTCAGCACCCCTGGTGGCCAGTACGTGGCTGACTTTAACTTCTTTGACAAGGTGCAGGTGAGCAGCGACCCTATACTCCCCAGCAACAACAAAGATAAGCTGAAACTAGAGGAGTACAAGAAGGAATAAGAGGTCCCTCAAACATGTTGGACACTGGTAATAAACATGACCCACAGTTACTGTCTGGAAACAATTTGTAAACACGCGTTACGGAAATATATCTGTTTTTATTTCATATAACTGCTAAACCCAATACGCATGAGTGAATGATGACACTTTTAGGCAAATAAACTCATGTTCAACATGATCAGTATGCATCTGGACAGAGTAAATTCAGGTGCAGTATATAATTAGCACATCGTTTGGATCCACAAGCCATATAATAGGAGAATATGGACATACAGGCAAAACAAGGACTGGGTCTCAGGTGCCAGTGTTTGAGTGGAACTGTGGCAGTAACTATTGCTGTACTAGAAATATTTAACCTGTACATAGGATTCCAGGAAAGAAGATTGAAGATGTTGTTTCTTTGTATCCCTCAAGTTGGATATTTTAATATATTACACAAATTTCACACTAAGAGCAGATGGGGATAGAACAAAACTTTTTTAGTGTGTAGTGCTTAAGAGCTGTGTTTTTTCTGTCTATGAATAAACCATTGACTTTGAAGAAGAGATGTTTCATATGCCATTATGAGATTGAAGGGATGTTTTTATACCCCTTCCCATTACCCCCATCCCACACTGCTCTACTCCTCATCTCTTAGGGTCGAGCCAATTAAGGGCTCTACTCAATCCGTATCGCAAAAGTTCCAAGTTACAGCGTGATTGAATTTTAAA

Function

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005242 inward rectifier potassium channel activity molecular_function

KEGG:

id description
K05008 KCNJ15, KIR4.2; potassium inwardly-rectifying channel subfamily J member 15

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1216651 lncRNA downstream 101890 38329320 ~ 38329539 (-) True G1068238
TU1216648 lncRNA downstream 103477 38327734 ~ 38327952 (-) True G1068235
TU1216619 lncRNA downstream 138515 38292690 ~ 38292914 (-) True G1068206
TU1216616 lncRNA downstream 141106 38290111 ~ 38290323 (-) True G1068203
TU1216605 lncRNA downstream 158770 38272364 ~ 38272659 (-) True G1068192
TU1217753 lncRNA upstream 332924 38767011 ~ 38776459 (-) True ripply3
TU1217801 lncRNA upstream 421966 38856053 ~ 38910288 (-) True G1069285
TU1217926 lncRNA upstream 580506 39014593 ~ 39019007 (-) True LOC110537576
TU1217984 lncRNA upstream 672977 39107064 ~ 39108139 (-) True G1069455
TU1217988 lncRNA upstream 675571 39109658 ~ 39151990 (-) True G1069457
XM_036937517.1 mRNA downstream 116807 38305193 ~ 38314622 (-) True LOC110537564
XM_021623696.2 mRNA downstream 118363 38305193 ~ 38313066 (-) False LOC110537564
XR_005034971.1 mRNA downstream 183746 38242108 ~ 38247683 (-) False LOC118937669
XM_021623690.2 mRNA downstream 249815 38159600 ~ 38181614 (-) False nup88
XR_005034970.1 mRNA downstream 249815 38161179 ~ 38181614 (-) True nup88
XM_021623714.2 mRNA upstream 200459 38634546 ~ 38677861 (-) False LOC110537568
XM_021623711.2 mRNA upstream 200459 38634546 ~ 38677866 (-) False LOC110537568
XM_021623712.2 mRNA upstream 200459 38634546 ~ 38677867 (-) False LOC110537568
XM_021623709.2 mRNA upstream 200459 38634546 ~ 38677869 (-) False LOC110537568
XM_021623708.2 mRNA upstream 200459 38634546 ~ 38677871 (-) False LOC110537568
TU1216260 other downstream 725058 37672182 ~ 37706371 (-) True LOC110539142
TU1216105 other downstream 764175 37614168 ~ 37667254 (-) True LOC110537546
TU1216102 other downstream 824414 37603165 ~ 37607015 (-) False LOC110537546
TU1216103 other downstream 824414 37603165 ~ 37607015 (-) False LOC110537546
TU1216092 other downstream 924285 37505880 ~ 37507144 (-) True LOC110537540
TU1217947 other upstream 607433 39041520 ~ 39072472 (-) True LOC110537579
TU1217986 other upstream 674213 39108300 ~ 39108962 (-) True G1069456
TU1218083 other upstream 902017 39336104 ~ 39337974 (-) True fkbp6
TU1220392 other upstream 2604779 41038866 ~ 41039931 (-) True G1071725
TU1221758 other upstream 3611776 42045863 ~ 42062632 (-) True G1073009

Expression Profile