RNA id: XM_036937536.1


Basic Information

Item Value
RNA id XM_036937536.1
length 3719
RNA type mRNA
GC content 0.52
exon number 12
gene id LOC110537573
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 38850317 ~ 38877851 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCACCGCCCCTCTCCCTCAGTCCGCATTTGGTTCTGCAAAAGGAATTGACGGGTGCTGTTTGGAAAATCGGTCTGTCTTTAAGGATTACTGAAGCCAAAAAACGAGACTTCTTGAAGACGAAAAGGTTGCTTTATTATTCCTAGCACTGTCTGAGACAACTTCGCATGCTCTCCATTGGTAGCCTAGTTATGTATCCTTATCCTGGCGTTGAAATAAGGAAATGGAGAACTCAGTTGATGTCTTCCCTAGTCGATTAAACAAGGTGGACATTACATGGGAAGGACATATAGTCGTTATTCACTAATCATCATAACTGCAGTGCCCGTGCGTCATCGAAGACACGTTTCTGGTGGTTATGGCAGCAAACACTCTGGAATGAAGTGTGAAAAATAACATTCCAGGCGCAGATAAAAAGGAAAAATCTACGTTTTGAGGGCGAAGAGGAAGGTGTTCTGTGTTGCAACAGGCATTAATTTACAGCAGTCAGAGATGAAGGAAAAGTCCAAGAATGCGGCGAAGACGAGACGAGAGAAAGAAAATGGAGAATTTTATGAACTGGCGAAATTACTGCCTTTACCTTCAGCGATCACCTCACAACTGGATAAGGCTTCAATAATTCGGCTGACAACCAGTTATTTGAAGATGAGAGCCGTGTTTCCGGATGGGCTGGGGGAGGCCTGGGGCCAGCCTACCAGAATCAGCCCTCTGGACAACATGGCAAAAGAACTGGGATCCCATCTACTGCAGACTCTGGACGGCTTCGTATTCGTTGTCGCTTCAGACGGCAAAATCATGTACATCTCTGAGACTGCATCAGTCCACCTCGGCCTATCCCAGGTGGAGCTGACGGGCAACAGTATATTTGAGTACATCCACCAATCAGACCATGATGAGATGACGGCCGTGCTCAGCGCCCATCAGCCCCTCCACCATCACTTCCTGCAAGagtaCGAAATTGAGCGCTCTTTTTTCCTGAGGATGAAGTGTGTATTGGCCAAGCGTAATGCAGGACTGACGTGTGGAGGATATAAGGTGATCCACTGCAGTGGGTATTTGAAGATCCGTCAGTACGTGATGGACATGGCGCTGTTTGACTCGTGTTATCAGATCGTGGGTCTGGTGGCGGTGGGCCACTCCCTGCCTCCCAGTGGTATCACAGAGATCAAGCTCCATAGTAACATGTTCATGTTCAGGGCCAGCCTGGACCTCAAGCTCATCTTCCTGGACTCTAGGGTGGCTGAGTTGACGGGACACGAACCCCAGGACCTGATCGAGAAGACACTATACCACCACGTGCACGGCTGTGACGCTTTCCATCTACGCTTCGCTCACCACCTCTTGTTGGTGAAAGGGCAGGTCACCACTAAGTACTACCGTATGTTGTCCAAGCACGGGGGCTGGGTGTGGGTGCAGAGCTACGCCACCATCGTCCACAACAGCCGCTCCTCCAGACCCCACTGCATCGTCAGCGTCAACTATGTCCTCACGGACGTAGAGTATAAAGATATGCAGCTGTCTCAGGAGCAGAGTCGAGCGGCCAAATCCAGCTTGGTCTTTAAGAGTGGCCCGGCCTCCTCTCAGGACCCCCGCAAACAACATAAGGCCAAAGCAGTCAAGATCAAGAGCAAACTCAAAACAGCCCCCTACCCTCAGCCCAACATCACCTACCATCCAGACAAGCTGGACTGCTCCCCCCAAGGAGAGGCCTGGAAGGAGAGCCCCCCGTACACTCTGACCCCCTGCCAGGGGCAGAGCTCTGGCCCCTCTGGAGGCCCAGAAGCTGAAGAGGTCCTGTTTAGCATCAGCGCCCCGTATGGCCTCTCCTTCCCCAACCCATATGGACACCTACCCCACACGGACTCCCAGAGGAGGGTGCGACCCACCCAGGGTTCCTCTTCCGCCTCGCCCTCCCCGGCTTCCCCCAGCCTGGCCGCACGGCAGCTGCTCAGCTCCCTGCAGGATCGAGGGGGCGAGGAGCGCTGGAGCTGTGCCAATGCCAAAACCCATCCTGGTCACGCCCCGAGGCCCTCTGTTGCATCGTGTGCCATCACCACTGCCACTGCAGCAGCGTATTCCGGCCCTACAGCGAGCAGGGGGTACTCCCCCAGCGAACCCCTCCATGGCGTCCTCTCCAGCTGCGCGACCCTGCGCCCTATCAGCAGGTACAAGGAAGAGCCCTACGAGCATCACACACTTGGCCAGAGGAAGACCACAGAGGACCGCCTGCCCTCCCAGTCACAGGCCACAAAAGAGGACAGCAAGCTGCCGTTCAACCGAGACCACCTCCACAAGGTCTCAGAGGGTGGTTGCATAGTAGGGGAGAAGCCTTTGTCCTGTCCTCTGCTGAGTAGCTCTGTGCTGGAGAAGGCGAGCTATAAGCAGTCCGGGTCTCTCCACGGCCTGGGCCAGCCCTTCCCCATGCAGGTGGTGCTGGAGCAGCACAGGAGGCTGTGTATGATGGAGTCCCCCTACAGCCACAGTGCCACTGGCCCCTTGGAGCACACGGACAGCAATTGGGAGCGGAGGACCCCCAAGCTGCTGGAGCCTGAGGcgggggagaggaggatgtggatgGGGGTTGGAGTTGAAGTTGGGGTTGGGATGGGGGTGGGAGTTGAAGTTGGAGTTGGGATGGGGGTGGGAGTTGGGGCAGGCCTGCCGGCCCAGGCTCCGTACATGTCTTTGAATCTCCACCACGTCTTGGCCAAACACAGCTCCTTCCAGGCCCCGCCCTACGCTGCCCTCGGCCATTTGTCGGACAGCTACGGTTACCGTGGTGATGAAATGGGTTCTTATGGCTACAAGAGCCAAAGCCCCGCCTCTGGCTCCTCCCCTGAGACCCACAGGGAGATCCCTCATTACATCGGCACGTCCGTCATCATCACCAACGAGAGGTGACACGGCCTGGGATTGAAGGTCAAGAAGGGACAGACACCCTTAGACTTCAGCCTTTTTGGTCAGAAACAGACCATGACCAAAAGCTGTATCAGTGACTATGTTACTGCGTCAGACATAAGTCGAGTCACTTTCTGGGGACCCCCATTTCTGTTTTTCCCGATGCTTTCTACACAGATAAACCAACGTCAGACTCCTGTAAGGAGCAGCCAGGAATTTCAGGTTTCTTGAATACATTATATTTTTGGCATACAGTTTAGCCAATAGCATATGTAATGCATTGCCACATTCTAGATCAAAGCCATTTCTTTTGATAAGTCCTCAATCACCTTTGAGCCATACAGTACATCATTTGAGGTACAAATTGCCTGTGAAGAATACACCCCTCTAATGTTGTAACTCATAGAGGTACCTATCCTACAGACCTGAACAAGAAGAGACTATAGAATGTAGCATGAGTTCAACCCAATTCGCAAGCTAGTTCAAGTGCAAACTGTTTCCAATGCGCGTATAAATTATGCCAACAGAAAAATTACAGTTGCAAAAGTATTGAACGTGGACAATGTCTCGCACACAGTAATGAGGGAAAATATCCTTCATCCTCTTTTGAAGTTGGAATTAATTTGGTATATTCTACCCATGGCAGAGATTGGAAACgtaatgtgtttatttattattgtGCAACACAAAGCAGCTTGCTTATTTATGAAGGAAACTAGGGTCTAACAAgtataatgaaaaaaatatatactgcaTTGGgggaaatgaaatgaaataaaacaaGGTAGTTTGCTTTCATTCTGAATAAACAATTCAAATGAAA

Function

GO: NA

KEGG:

id description
K09100 SIM; single-minded

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1217753 lncRNA downstream 73858 38767011 ~ 38776459 (-) True ripply3
TU1216651 lncRNA downstream 520778 38329320 ~ 38329539 (-) True G1068238
TU1216648 lncRNA downstream 522365 38327734 ~ 38327952 (-) True G1068235
TU1216619 lncRNA downstream 557403 38292690 ~ 38292914 (-) True G1068206
TU1216616 lncRNA downstream 559994 38290111 ~ 38290323 (-) True G1068203
TU1217926 lncRNA upstream 136742 39014593 ~ 39019007 (-) True LOC110537576
TU1217984 lncRNA upstream 229213 39107064 ~ 39108139 (-) True G1069455
TU1217988 lncRNA upstream 231807 39109658 ~ 39151990 (-) True G1069457
TU1217993 lncRNA upstream 235981 39113832 ~ 39114452 (-) True G1069462
TU1218012 lncRNA upstream 246379 39124230 ~ 39185219 (-) True G1069480
XM_036939655.1 mRNA downstream 82761 38766085 ~ 38767556 (-) False ripply3
XM_036937529.1 mRNA downstream 97426 38718529 ~ 38752891 (-) True ttc3
XM_036937530.1 mRNA downstream 97494 38718529 ~ 38752823 (-) False ttc3
XM_036937528.1 mRNA downstream 97522 38718529 ~ 38752795 (-) False ttc3
XM_021623707.2 mRNA downstream 172444 38634546 ~ 38677873 (-) True LOC110537568
XM_021623724.2 mRNA upstream 114945 38992796 ~ 38996885 (-) True LOC110537575
XM_021623727.2 mRNA upstream 119531 38997382 ~ 39006119 (-) True LOC110537578
XM_036939506.1 mRNA upstream 137676 39015527 ~ 39027908 (-) False LOC110537576
XM_036937538.1 mRNA upstream 163421 39041272 ~ 39072520 (-) False LOC110537579
XM_021623729.2 mRNA upstream 195397 39073248 ~ 39077590 (-) True LOC110537580
TU1216260 other downstream 1143946 37672182 ~ 37706371 (-) True LOC110539142
TU1216105 other downstream 1183063 37614168 ~ 37667254 (-) True LOC110537546
TU1216102 other downstream 1243302 37603165 ~ 37607015 (-) False LOC110537546
TU1216103 other downstream 1243302 37603165 ~ 37607015 (-) False LOC110537546
TU1216092 other downstream 1343173 37505880 ~ 37507144 (-) True LOC110537540
TU1217947 other upstream 163669 39041520 ~ 39072472 (-) True LOC110537579
TU1217986 other upstream 230449 39108300 ~ 39108962 (-) True G1069456
TU1218083 other upstream 458253 39336104 ~ 39337974 (-) True fkbp6
TU1220392 other upstream 2161015 41038866 ~ 41039931 (-) True G1071725
TU1221758 other upstream 3168012 42045863 ~ 42062632 (-) True G1073009

Expression Profile