RNA id: TCONS_00005854


Basic Information

Item Value
RNA id TCONS_00005854
length 1663
lncRNA type read_through
GC content 0.41
exon number 6
gene id XLOC_002031
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 17459657 ~ 17497772 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTAACATACAAACCATTCCGACTTTAGTGAAAACTGCCACAcatgtttgttttactttggtGAAATCTGGACTAAATGCTTCGTTTCCAATAAcgcttttttaaaataagttttagcAAATTAAGCTTGAAGATCATGATGACGTAGCCTATGTAAAAGAAACACTTGCACGTGTGCTGCGGCTACTGCACACTAATTTAAGTAATCTGGGCAACCTGCTGATCATTTAATGCAGGCTATTTAATCGATATCTAAGCATTATTGTCCATACTCATTAAGGGTATTTTATTGTGGAAAACAGGCCAGAGATGATCAACACAACGGAAATCAAGAACAGCGCGAGATCTGACTGAACCAAAACAATCAGCAGAGTGGAAACATATCCGAGCGGAACTATGGAACAGCAACACACAGCAATGGAAACGTGTGAAGTTCCTTCACAAGCTCAGGAACCACAAGGAACGTCTTCCAGCCCTGTCGCTTCTTGGACTTCAGGATGTCCCCAAAAATGTGATCGCCCACATAGAGGATGTCTTTGCCCTTCACATCCAGCAAGTCACAGACTAGATCAGAAGATCCTGAGGAATGAGTTAAACAGTGATAAAGTAAACACAGTGGCTTCATGTAataggaggatgatgatgatgatgaagaagggGATGTCGGGTTTTACCTCCAGAATACACCGTCCCATGCTGGAGGTCTCCGGTGTACGTGCCGATACGCAACTTCCCAGTGTCCTGCAGGAGAAAGGGCAAGAGAACACACTTCACTCCTCGCTGACGGCAGAAACTCACTGTGTCCACTTGGCGTAAAACTGTCCCTCCAGCGAAGAACAAGGGCTTCCTCGTATCCACAACCACCAGGTCAAACCTCACACAGCATTTTGTACTTTGCTGGATTCTTCTGTTGTCAGAGGAAAGGGCATTTGCAAGCAAACTCTGCCTCAATACACCATTGACTGGCACCACAATGAATCTTCACTCACCCTCTCAGGCACGTGgaaccacacaaaaacaccagAGAAGAAGCAAAACACGAAAAACACAAGGAAGCAGAAATAATCCAAATGCTCCTGTAAAATTGAGAAACAGATTAGAATGAACTGACAGTGTATACAAGTGTCAAAGATATCATTTTGTATTCATAATTATAGGATGTATACTGACATCTAGCGGCACGGATGTAGGCAAAAGTACATTTACAATTACTGTGAAAAGAAAATGCCTGGTTCACATCAAGCCATAATTAATTTACTCCACAAGCAAAATTGTTGGATAACAAGATGAGTAACCAAATAAGGTGACCCCCTTcaaatttaacagtttttttagaAGACTAGTAATATGAGTAGGATAGCATGCATGTATATCattgaaaattatatttttatactgtgtataacataacaaaatattaaacaataacaagtgtggatgtttcccagagatgggttgtgggtggaggggcatccgctgcgtagaaacatgctggataagttggcgtttcatttcgctgtggcgaccccggattaataaagggactcagcccacaagaatataaatgaatgaatttgctattattatatttgttggtTTATTGTAGCCCTTGATCTCCATTTTTTAAgagtgttttttaataaaactaaaatgtccAGTTTGAC

Function

GO:

id name namespace
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0005634 nucleus cellular_component
GO:0044020 histone methyltransferase activity (H4-R3 specific) molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005853 lncRNA upstream 10618 17442234 ~ 17449039 (+) True XLOC_002028
TCONS_00005852 lncRNA upstream 21173 17438158 ~ 17438484 (+) True XLOC_002027
TCONS_00005699 lncRNA upstream 37634 17420675 ~ 17422023 (+) True XLOC_002026
TCONS_00005851 lncRNA upstream 194296 17263598 ~ 17265361 (+) True XLOC_002025
TCONS_00005850 lncRNA upstream 197402 17261485 ~ 17262255 (+) True XLOC_002024
TCONS_00005861 lncRNA downstream 96012 17583381 ~ 17587877 (+) True XLOC_002032
TCONS_00003942 lncRNA downstream 182304 17669673 ~ 17674093 (+) True XLOC_002033
TCONS_00003948 lncRNA downstream 228580 17715949 ~ 17721131 (+) True XLOC_002036
TCONS_00005862 lncRNA downstream 519754 18007123 ~ 18024486 (+) False XLOC_002042
TCONS_00005700 lncRNA downstream 519786 18007155 ~ 18071506 (+) True XLOC_002042
TCONS_00003937 mRNA upstream 25779 17235370 ~ 17433878 (+) False XLOC_002023
TCONS_00003938 mRNA upstream 27049 17371356 ~ 17432608 (+) True XLOC_002023
TCONS_00003932 mRNA upstream 358838 17088261 ~ 17100819 (+) False XLOC_002018
TCONS_00003931 mRNA upstream 397111 17026870 ~ 17062546 (+) False XLOC_002016
TCONS_00003930 mRNA upstream 397111 17026870 ~ 17062546 (+) True XLOC_002016
TCONS_00003941 mRNA downstream 104904 17592273 ~ 17674345 (+) False XLOC_002033
TCONS_00003943 mRNA downstream 193705 17681074 ~ 17691171 (+) True XLOC_002034
TCONS_00003945 mRNA downstream 225653 17713022 ~ 17726406 (+) False XLOC_002036
TCONS_00003946 mRNA downstream 227497 17714866 ~ 17728165 (+) False XLOC_002036
TCONS_00003949 mRNA downstream 260511 17747880 ~ 17759878 (+) True XLOC_002037
TCONS_00003940 other upstream 5085 17454490 ~ 17454572 (+) True XLOC_002030
TCONS_00003939 other upstream 6154 17453363 ~ 17453503 (+) True XLOC_002029
TCONS_00003936 other upstream 332209 17127316 ~ 17127448 (+) True XLOC_002022
TCONS_00003935 other upstream 334191 17125340 ~ 17125466 (+) True XLOC_002021
TCONS_00003934 other upstream 336157 17123368 ~ 17123500 (+) True XLOC_002020
TCONS_00003944 other downstream 207896 17695265 ~ 17695340 (+) True XLOC_002035
TCONS_00003947 other downstream 228537 17715906 ~ 17721131 (+) False XLOC_002036
TCONS_00003954 other downstream 402720 17890089 ~ 17890203 (+) True XLOC_002040
TCONS_00003957 other downstream 753429 18240798 ~ 18251068 (+) True XLOC_002043
TCONS_00003963 other downstream 1404678 18892047 ~ 18896604 (+) True XLOC_002046

Expression Profile

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