RNA id: XM_036937550.1


Basic Information

Item Value
RNA id XM_036937550.1
length 5298
RNA type mRNA
GC content 0.42
exon number 7
gene id zgc:171740
representative False

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 39343615 ~ 39358852 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GATACATTGTTACAGTTCAGTTGGCAGGAGCATGTGGACATCCTGTTGTAGCTGGTCCTGTTTGGAACCTACCGCCACAGTGGAAGAAAACGGCAGCTCATGGCGCCAGGCCTACACAAACTCGGGCAACAGCCAATCCCAGATCTCTCCCGAACTTTTGTGCAAGGCCTGCGGAGGCCATTTTGACACCATCGCTATAAAGCATGTCTGTGTGGACTGCAAGAAGAACTTCTGTGGCCGCTGCTCGGTGCAGCTGGAGCCGCCACGCCCGCGCCTCTGCCACACATGTCAGCGATTTCACGGAACCCTCTTCGACCGCGCCCAGTTGATGAGACTCAAGGTGCGGGAGCTGCGTGACTACCTCCACCTGCACGAGGTGCCCACCCAGACATGCCGGGAAAAGGAGGAGCTGGTTGAGCTGGTCTTGGGCCAGCAGACCCCCAGCACCAGCAGTGAGACTGTGTCCTCCCAGCCCGGGGCTCACAACAATGTCCCCTCCCCAGACACGCCGTCCCCTCCCCAGACACAGGGCCCTACCAGCCCCGACACATTGAGCCCAGAGCAGCCAGAACAATCAGCCCCTGAGGCAGAATCAGAGCAGATCTCTgatgaggaagaagaagaggaggaggatgaggatgaagagTCATCGGACAGCGAGGAGACCCTGATGCCCGGCCGCAGAGCCTCTCTGTCTGACCTGAGCCGCGTGGAGGATATCGAGGGCCTGAGCGTGCGCCAGCTCAAGGAGATCTTGGCCCGCAACTTTGTCAACTACAAAGGCTGCTGCGAGAAGTGGGAGCTGATGGAGAGGGTCACCCGCCTCTACAACGACCAGAAGGACCTCCAGAACCTAGTTTCAAATACAAAAAATGAAGAAGACCCTGCAGCTCCCAAGAGCCAGGAGGAGAACCTCTGTCGGATCTGCATGGACTCTCCCATTGACTGTGTGCTGCTGGAGTGTGGCCACATGGTCACCTGCAGCAAGTGTGGCAAGCGCATGAGCGAGTGCCCCATCTGCAGACAGTACGTGGTACGGGCGGTGCACGTCTTCAGGTCCTGATGCATGGCCACAACGAGGGACACAGTGGATACCAAGGACAACATGGCATTGCTGCCACCACTGCTCAGAGATGGCATATTTTACAAGAATACACTCCTCTGTAATGCACACTCTCACTCATTCAATCAGTCTTCCTCTTGCTGGCATTCCAGAGAAATAACctgcctccacttttctgggttCTCTGTTTTTCTACTCCACCTGAACCTATTGTTTCTACACTTTCAGCATTTTACAAGACCTCAATATTTCAGTACTATAACTTTGTTGTTCAAAAGAGTTAGGTATCATGTATTCACATTGGTGCCAGTCAGACACCAAACTATATTGGCACTTTGCATGGGAGGGCAGCAGTACCTTTTCAAATTCTGAGGTTATTGGGTAGAGATCATGTTTATTTCAACCCCACACACAGGCAAGGTTATATTGCATTTTTCTGTCTTTGCATTTGTGTGCACGGGGAAACAACTGCGTTCCATAGCTGAGAAACACAGGGCCTTACTAGAGAGGGCATCGACTAACAAGCAATGAATAtaaaaaaaacgtatttgttCTAGCAATGAATGAAATGCTGAATCTTGGTAAAAGAGGGAACATGTTAGGCTACTCTGTTATGCATATCAATAGCAAAACAGAGTGGCCAGAATGGTGCTATTTGACTAGTGATTAACAACACTCGTGTAACAAAACAGAATGGCCAAAATGGTGCTATTTGACCAATGGAAGCAACACTCAGGGCCCCATTTTGACAGTGCAAGTAAGCGGTGTGTGTCGAGACCAAAATATCCAAAACCGTTTATTTCAAACCTTATCGCCCCAAGCAAGGCTTGGATATGAACGTGCTAATATTTGATGCATGCAATGCAGTAGTTGTGAAATTGGTGCATTAAGTGCAGCACGGAGTACTTGAAGTGGTAAGGTCTGTTTTGCGCCCTCCAATTGTCACACTTAAAGTTCAGTACCTGCAAACCAGCTGTTCTGTTAATTGGTTTTGTGGTCCAGAGAGCTATCTTTAGGTTGCAGTGCACTTGCTAAGCATAGAACCCAGGCCTTATCTGTCTTATTGGCGATCCTTCAGACACATCTGTGTGGTGGTTGAACATAGCATCTTAGGAGTGGAAACAGCCCTTTAAACACAAGAGTCTGCTTGTAGCTCACTGAAAGTACTTGAGGAGGGTCAAGGAGGGGATAATGCTTGGCTTCATTCGCCCTTTTATGGTCAAATTACCCTTTTAACTTGCAGATATTGTATCAAAACTGGAACAGAACACGCATTGACTTGACGGTAATAGTTAATAGTTCTTTAAATGAGCCACAATGGGGATTTTTTTCTGAAATGTAAACCCTACACAGTAGATATGCAGTTTCTTTTTTATTCTCTGCGGGTCATAAATTGTTTGAAGTTGGTTCCATGACCTTACCCCAAATGAGTTTTGGGGTAAAGAGAACTGACCTCGTTAGCAGAATGTCTCCATTCCAAggctctcaccacctctctcttatCAGCAAGTGCCCCATAACAGAGTGCTCATTAACTTAGCGTACGTTGTGCACTGAATACACTCATTTCCTAATGACGAGTTGATTAAATGTATCTACTAGTTAAAAACAAATCAGTTTTCTGCAAATTTACTTTGTTTGTGGGGGTGTTTTTAAAAGCTAGAATTgataattgaaacaataacaaagagcCACCCCGCCTCTTTCAGtataaagctgagggatggaCATGGAGAAATAgaaccactctcagattcatagacagagctaaggactgaccatccatgatatcaaagttatagttttaaccatgttttaaggctatacagtgtttgtttagatTTACATTGTTTATACAAATtgaagtaaaacaagcttatattttggattCTCATGGGGTATGACaagttaaactaagctcatgaggtatTTATACGTTAtaatcttcaagaatcaatgggtatatatcattcattaaatggatgtagcaactaaggattctagctttaaggaGGATCTTGGTTAATTCTATTCCAACTCTAGGCAATTTGGTAAATGGATTGAGATTGAATTTATATGAAATTAGAGGCAATTTTATTACAGTGCATTTCTCAAATTGCCTGGAATTGAAATGGTTTGGCAGCCCTCGCAACTTTTTATGGAACATGTTTTAAAATTATAGAGAAACATAATGGTTTGCATTTAAATGGACTTTCTACTGTATATCTTGTTTTATAGCTAATGAATGTACCATAAAACGGATCATGAGGAAAATGCACTTATACTAATTAATGTGTCTGTTTTAGGGAATGCGTATCCACTGGGATAGACTCCGTTTATCCCAGATACTTGGTCTGCCTGAACTGAATGTAACTGGTTTAAGTTGTTTACAATAACAAAACCATTTCTTACTGTGACTGCCAAATTGCCAATATCGCAAATAGATTTTACACTAGTCCGTTTGATATGTCTTTTGTCAATAACTATGCTAATATCATGCAAGAACAATATGAATCATCTCATGTAGTTTGTGGAGAGCAGGTGAAACAAGATATGTCAGTGTCGTGAGACTAGCTCTGGATCTTTTCACAAACATCTCGTCACCCATCTTGTTTTTATCCTGGACATCAGTTTATACAAGCCAGGCCGTCAGTCAAGTCAGTTCTCTCTGAGGAGTGTTTTCTGTGCATGTGAAAACGTGTGTATACATTTAGCGAAACCCAACCCAAGATCTAAACATTCCAAACAGTAGAATGTACCTTAACAGAACACTCTTCAACCAAGAAAGCTAATATTTTCCACATATACTATAGCCCATGAACATGTGTAATGCTCCTTGAGTACCTGATTTAAAGGCAAGGTCTGATAGAGGTTCAGTGTAGATGTGTTCTCTATCAAATCATTTccgggtaacaattaagtacctgactgattgttttcatttaaaattgtctaaaataaataaaaatagcttcttagcaaagagcaatttctcaagcaataattttgctaggactctGGGAGAGGtatgagtggggaggggaaaattgAAAATGTtattattggcagaggtttggaacttaACTAATTTACCCCATGGTGATgacaccatggaaggccaaaactcccaCCAAAACAGGTTAAAACTTCAGGCGTTTTTTTCagacagctcttacactaaaagggttaTAATTTTcacacagtattattccaacctcattgtGGAAATGCGTATATATAAAACAAAGGAATATCATGTTTttaactgcactgggcctttaataacAGTATATGAACTGTGTAGCAGATGACTAATTAGAATATTTAAAGAAATGTCTTCTAAATATTGCCTTCTCCCTGATGGTATTTCAATGGCCTTAAAAGGCACAAGATAAAACCTTAATGTCATGCGTGTGTGGGATGTTGGTGTCCCTAGTCTGCAACGAGAGTCCTGTAGTTCTTATTGCTGTCTGAGGACCTAGATATTAATATCAATTTGTTATTGGTGACTTTAAAATGGAGGTGTTTTGGTATTTTGAAGACTAATCAATCTACTATTGTGAAATGTTGGACGTGTTTAGAAAAATCAGACAATCTATCATATCTGTGATTCTTTAACAGTGAGTTATAATTTTGGCAAATGCCTTGCTATGGAGAGTTGTGCTAAAGGTGATTAACAACACCTCCACTAGTTATTAGATAAGAACACGGAAATTAGTCTGCACTATCCCACCCCAGGGGGGAAAAGGGTCATTATTAGCATATGAAGTTCAACTTTAATGGAAatatttgcatgtgtttttttgggggggggaaagGAAGACTGCTCTGACAAAAGGCAGTTTGAAAACACTTGGAATGACTCATAACTGTATGTGTGGAGAAGTATTTGTGTTTCGTATACTCTGATGATTTAACTTTGTTCAACAACTGTGAAATTGTATATAATAATCCCATGCGACAGTATCATTTAAAATATTATTGAGCGTGTTGTACATTTGTCAAATTACTAGCATGGACTATTGCCTTTGTTGTAGTTTAAATATGTATTCAGTAGTATTGGCTAAATGAGCTAAATGCTGGATCAGTTCTTAACTACAATGGAAGCTAATAGGATTTATAAATCAGAAAAACCtatatttttgaaaatgtattaaacatattgATGTTCTTGTGCATATATTTTGTTGGACATTTTTTATATTGATAAAGATATAATAAAGTACCCCAACAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1218102 lncRNA downstream 47756 39295625 ~ 39295859 (-) True G1069544
TU1218101 lncRNA downstream 49709 39293444 ~ 39293906 (-) True G1069543
TU1218098 lncRNA downstream 55436 39287953 ~ 39288179 (-) True G1069540
TU1218091 lncRNA downstream 57363 39281658 ~ 39286252 (-) True G1069533
TU1218001 lncRNA downstream 107052 39236092 ~ 39236563 (-) True G1069469
TU1218171 lncRNA upstream 38055 39395581 ~ 39396334 (-) True G1069600
TU1218177 lncRNA upstream 58190 39415716 ~ 39416033 (-) True G1069606
TU1218181 lncRNA upstream 61581 39419107 ~ 39419344 (-) True G1069610
TU1218207 lncRNA upstream 146599 39504125 ~ 39504676 (-) True G1069635
TU1218224 lncRNA upstream 158136 39515662 ~ 39515872 (-) True G1069650
XR_005034981.1 mRNA downstream 609 39336054 ~ 39343006 (-) False fkbp6
XM_021623751.2 mRNA downstream 611 39336054 ~ 39343004 (-) False fkbp6
XM_021623752.2 mRNA downstream 619 39336054 ~ 39342996 (-) False fkbp6
XM_021623746.2 mRNA downstream 31492 39309216 ~ 39312123 (-) True LOC110537598
XR_005034977.1 mRNA downstream 97984 39240657 ~ 39245631 (-) True LOC110537596
XM_021623753.2 mRNA upstream 13668 39371194 ~ 39377049 (-) False si:dkey-183i3.6
XM_036937551.1 mRNA upstream 13668 39371194 ~ 39377049 (-) False si:dkey-183i3.6
XM_036937552.1 mRNA upstream 13668 39371194 ~ 39377049 (-) True si:dkey-183i3.6
XM_036937555.1 mRNA upstream 41470 39398996 ~ 39405263 (-) True si:dkey-183i3.5
XM_021623754.2 mRNA upstream 49047 39406573 ~ 39409769 (-) True si:dkey-183i3.9
TU1218083 other downstream 5641 39336104 ~ 39337974 (-) True fkbp6
TU1217986 other downstream 234653 39108300 ~ 39108962 (-) True G1069456
TU1217947 other downstream 271143 39041520 ~ 39072472 (-) True LOC110537579
TU1216260 other downstream 1637244 37672182 ~ 37706371 (-) True LOC110539142
TU1216105 other downstream 1676361 37614168 ~ 37667254 (-) True LOC110537546
TU1220392 other upstream 1681340 41038866 ~ 41039931 (-) True G1071725
TU1221758 other upstream 2688337 42045863 ~ 42062632 (-) True G1073009
TU1223569 other upstream 3346477 42704003 ~ 42713923 (-) True G1074731
TU1224206 other upstream 4206259 43563785 ~ 43564240 (-) True G1075335
TU1224273 other upstream 4303033 43660559 ~ 43660837 (-) True G1075399

Expression Profile