RNA id: XM_021623753.2


Basic Information

Item Value
RNA id XM_021623753.2
length 1643
RNA type mRNA
GC content 0.41
exon number 12
gene id si:dkey-183i3.6
representative False

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 39371194 ~ 39377049 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGAGTTCAGTTAGAAACAGGAAGCTCTTTCTGCTCTCCCCCTTCACAGTTCTGTTACGGGTAACCTGTCTGTAAGTGGAGCAGTCAGTGAGATGGTGGTGGCCTGAAGGGGCTTTACTAAAGGCATGATAGCCATCTTCAGCCTACAAGGAGCTGTCTTGGCCATTGTGTCTGCGGCATCTCTCAGTGTCTTCTCTGCTTTCTGTCTGTGGTGCAGGAGGAAAACCAAAATAATACATGAAGAGAATCAAATTTATGACCCTCAAATATTCCAACGCGAAGGAAGCAGATTTGCAGTAATGCGATCTAAAACAGTCACACGACCCAACCAGATTATAAGAGAGCTGCCTCCAACACCAGCGGAACAAACACCACAAGTTGTGAATGAGGAGCAAGCGAAGTATCAAAATGTTGCAACAGCTCAGATGGGAAGCGTTGAACCAACATATGTAGATCCAATCCCAGTGTTAGTGTACCAGAATGTTAATGAGGGTGCTAATGCAGACACTAGAGAATCAGAAACGGATGGTGATCAATATGAGAATGTTTTTCCATCTATTGATACAATCAGCTGGGGCTCTGATGGCTCAGATTACGAGAACTCTGAATTCCTGGAGCAAATGAAGATGGGGTTAGAACCGTTAGAGGATGATGAACCGGATTACGTGAACGACACTGACTGATATGGAATCTACATGCTCTACGAGTGGATATCTATGGAAATTgacttttctctctttgttgagCTGCTTGAATAAATATTAAGTTATGATACGTATGTCAATGTGCTATACCAGAGCAATGCCATTTTAGGGTTAATGCCCAAAGTTGTACTACTTCATCAGGAATTCCCTTGAGTCAAAAAAATGTGAGGAACCATGTgcagcagggatgggcaactggcagcCCATGGATCAATTTCCAAAACTCAGTCAGGGTCTCAGTTTACTGTTGAGagagaatagtagaatacacaaggtgcacttttgaaatgtgcagttgtgcatcagcagttatGTCagccactcaattagcccatgccAGCAAAATtattttagattggtaaattagactagtggccagctatctaaacttgtaatcATGTTCAAATTATGGGGCCACCATTGATCATCAAAGATCATATTAACTGCTGTTTGTCTCTACCCTATGGTACAATGTGTATAATTACAGAAAATCCACTTAACTGCTGCTACTTTCCCCCCTGTTCGAACTGCatgtatggatgtgggtatgcagaCCCGCAAACCACTGTGGCCCCTCATGAGGAGTTCTGATTTGTGGCACCCACCCCATCaatgttgcccatccctgatgttCAGTATGTTTGATTGTTTGAGTGTTACTGTGTAACTGTCACCATCTAGTGGTACAAAATGAATACGAGTCAGCTCCAAatgtaaaagaaaaagaaaaaagattGTCAATGTGTATTAATAAATAAATCCTTACTACAAAACCTTTAAATGTACAACCTCTTTATAGACCAATGTGTTCTGTCAAGTCataaaaaaacattgatttattACAGAAGTGATATTCAATAGTATTTACATTAACATGCTTGTataaaatacaaaatgtatttAACCCAAAAATGTTACAACATTAAACAACTCCCCAGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1218102 lncRNA downstream 75335 39295625 ~ 39295859 (-) True G1069544
TU1218101 lncRNA downstream 77288 39293444 ~ 39293906 (-) True G1069543
TU1218098 lncRNA downstream 83015 39287953 ~ 39288179 (-) True G1069540
TU1218091 lncRNA downstream 84942 39281658 ~ 39286252 (-) True G1069533
TU1218001 lncRNA downstream 134631 39236092 ~ 39236563 (-) True G1069469
TU1218171 lncRNA upstream 18532 39395581 ~ 39396334 (-) True G1069600
TU1218177 lncRNA upstream 38667 39415716 ~ 39416033 (-) True G1069606
TU1218181 lncRNA upstream 42058 39419107 ~ 39419344 (-) True G1069610
TU1218207 lncRNA upstream 127076 39504125 ~ 39504676 (-) True G1069635
TU1218224 lncRNA upstream 138613 39515662 ~ 39515872 (-) True G1069650
XM_021623749.2 mRNA downstream 12342 39343672 ~ 39358852 (-) True zgc:171740
XM_021623747.2 mRNA downstream 13421 39343615 ~ 39357773 (-) False zgc:171740
XM_036937550.1 mRNA downstream 13668 39343615 ~ 39357526 (-) False zgc:171740
XM_021623750.2 mRNA downstream 15257 39343615 ~ 39355937 (-) False zgc:171740
XR_005034981.1 mRNA downstream 28188 39336054 ~ 39343006 (-) False fkbp6
XM_036937555.1 mRNA upstream 21947 39398996 ~ 39405263 (-) True si:dkey-183i3.5
XM_021623754.2 mRNA upstream 29524 39406573 ~ 39409769 (-) True si:dkey-183i3.9
XM_036937556.1 mRNA upstream 48073 39425122 ~ 39494021 (-) False ddx10
XM_036937557.1 mRNA upstream 48073 39425122 ~ 39494021 (-) True ddx10
XM_036937558.1 mRNA upstream 117147 39494196 ~ 39502812 (-) True zw10
TU1218083 other downstream 33220 39336104 ~ 39337974 (-) True fkbp6
TU1217986 other downstream 262232 39108300 ~ 39108962 (-) True G1069456
TU1217947 other downstream 298722 39041520 ~ 39072472 (-) True LOC110537579
TU1216260 other downstream 1664823 37672182 ~ 37706371 (-) True LOC110539142
TU1216105 other downstream 1703940 37614168 ~ 37667254 (-) True LOC110537546
TU1220392 other upstream 1661817 41038866 ~ 41039931 (-) True G1071725
TU1221758 other upstream 2668814 42045863 ~ 42062632 (-) True G1073009
TU1223569 other upstream 3326954 42704003 ~ 42713923 (-) True G1074731
TU1224206 other upstream 4186736 43563785 ~ 43564240 (-) True G1075335
TU1224273 other upstream 4283510 43660559 ~ 43660837 (-) True G1075399

Expression Profile