RNA id: XM_021623760.2


Basic Information

Item Value
RNA id XM_021623760.2
length 1893
RNA type mRNA
GC content 0.52
exon number 3
gene id LOC110537606
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 39505923 ~ 39508142 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACTTCCTGAGCCCTCGGCAGCTCAGCTGCCACACAGAGCACAGGAATCTACAGTAGTCTCTGTGATGGTTTCCACCATGATGTGCAGCAGGGTGACATTACACGAGCCCCATAATGGAGACTACAGGAGTCCTATGAGAATTGTCCCTCGCAGGAACTCTATTCCCCCAACAAAGGCTCTCACAGCCAAACATCTCCTGGCATACCCTAGACCACCCCCAGAGTCAACGCGCTTTACCCCATATCCAAAGAAGgtTGCAGCAAAAACCAACATGGCCGTGATGATGCTCCACTCCAGAAGAGCCTCTCTCTTCACCAGCACAAATAACAACTTCCCAGCTCTCCCACCCCAGCTAGTCCCCTCTGCATCCCCCCAGTCACATCCCAAGAGCCCAGCCCCCCATAGGGTTGTTGCAGGATTGATCAGCCGGGAGGTAGACACCGGCCAGTACATCATTCCCACTGAGGAGCCAGAGGAGCCTGTCACTGCTCATCATGCTCACCGCAGACGCCACCTCAAGCGCTTCAGCTCCAGGTGGTACTCAGGCGCTCCTTCTGGTGGCCCCTTTGATAGCACCCATAGCCCCAACCAAGGCACAAGTGGTGAGAACAAGCCCCACAAGCCGCGCTGCAAACTTCTAGGTGAAGGGAGGCCAAATTACGGTACCGCCAACAAGCAGCGTCAACGCTACGTCACCAAAGACGGGAAGTGCCAGGTGAACCTGGGCCCCATCGAGGACAAGAGCCGTTTCCTCTCGGACATCTTCACCACTTTGGTGGACCTGAAGTACCGCTGGTTCCTCTTTGTCTTTACCATGTGCTACATTGTTACGTGGGTGGCCTTCGCAGAGATCTACTTCCTAGACGCCTGGCTGAGGGATGACGTGGCCCACGTCCATGACCCGCAATGGCAGCCGTGCTTCGAGAACGTGGACAGTTTCATCTCCGCCCTGCTTCTGTCGGTGGAGAGCCAGAGGACCATTGGCTACGGCTCCAGATTGGTGACGGCCAACTGCATGGAGGGAGTGGTTCTCCTCATGGCCCAGTCTATCATTGGCTCAATCATTGACGCCCTCATGGTCGGCTGTATGTTCGTCAAAATCTCCAGGCCTCAGAAAAGGGCCCAGACTCTGATCTTCAGCAAACACTGTGTCATATCGGAGCGTGACGAGAAACTCTGCCTTCTCTTCCGCATTGGAGACCTGAGGGCGAGTCACATGGTGGACGCCAAGATTCGAGCCAAGCTTATTAAGTCCAGACAGACCAAGGAAGGGGAGTTCATACCACTGGAGCAGTCAGAGATCAACCTGGGCTACGATACCGGAGGAGACAGGCTTCTGTTGGTTGAGCCTCAGACCATCACCCATGTCATCAATGAAAGCAGTCCCTTCTGGGAAATAGGGGCTGAGCGTCTGACAAGGGAGAGATTTGAGATCATCATCATTCTGGAGGGAATCGTGGAGGCATCAGGTATGACATGCCAAGCCAGAACTTCCTATACTGAGGAGGAGATTCTGTGGGGCCACAGATTTGAATCCTGCATGTCTCTGGAGAAAGGGTCTTACCGGGTGGACAATGGTGCATTTGATAAAACCTTCCCAGTACATACCCTCACCCTTAGTGCTAAAGAGAAGAGTGATGAAAAAGAAGACGAGGTCCTCTTTTAGATCAGTACTATACACACTGAGCAAACAGCCCTTGTATTAATGGAATTTCAAGGCCAATACTTGTGAATGACTAGGTTTCTCTCCTTAAAATTAACTTTCCTGTTGTCTCTAATATTGTGGACAAACATTCTCCAAGAATTACACATTGACATGctaatctacagtgcattcggaaagtattcagaccccttgactttttccacattttgttacataacagccttatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1218207 lncRNA downstream 1247 39504125 ~ 39504676 (-) True G1069635
TU1218181 lncRNA downstream 86579 39419107 ~ 39419344 (-) True G1069610
TU1218177 lncRNA downstream 89890 39415716 ~ 39416033 (-) True G1069606
TU1218171 lncRNA downstream 109589 39395581 ~ 39396334 (-) True G1069600
TU1218102 lncRNA downstream 210064 39295625 ~ 39295859 (-) True G1069544
TU1218224 lncRNA upstream 7520 39515662 ~ 39515872 (-) True G1069650
TU1218226 lncRNA upstream 9181 39517323 ~ 39517552 (-) True G1069652
TU1218253 lncRNA upstream 51821 39559963 ~ 39560182 (-) True G1069679
TU1218259 lncRNA upstream 55901 39564043 ~ 39564266 (-) True G1069685
TU1218261 lncRNA upstream 56859 39565001 ~ 39565209 (-) True G1069687
XM_036937558.1 mRNA downstream 3111 39494196 ~ 39502812 (-) True zw10
XM_036937556.1 mRNA downstream 11902 39425122 ~ 39494021 (-) False ddx10
XM_036937557.1 mRNA downstream 11902 39425122 ~ 39494021 (-) True ddx10
XM_021623754.2 mRNA downstream 96154 39406573 ~ 39409769 (-) True si:dkey-183i3.9
XM_036937555.1 mRNA downstream 100660 39398996 ~ 39405263 (-) True si:dkey-183i3.5
XM_021623761.2 mRNA upstream 10455 39518597 ~ 39546033 (-) False LOC110537607
XM_021623763.2 mRNA upstream 10455 39518597 ~ 39546033 (-) False LOC110537607
XM_036937559.1 mRNA upstream 10455 39518597 ~ 39546033 (-) False LOC110537607
XM_036937560.1 mRNA upstream 10455 39518597 ~ 39546033 (-) False LOC110537607
XM_036937561.1 mRNA upstream 10455 39518597 ~ 39546033 (-) False LOC110537607
TU1218083 other downstream 167949 39336104 ~ 39337974 (-) True fkbp6
TU1217986 other downstream 396961 39108300 ~ 39108962 (-) True G1069456
TU1217947 other downstream 433451 39041520 ~ 39072472 (-) True LOC110537579
TU1216260 other downstream 1799552 37672182 ~ 37706371 (-) True LOC110539142
TU1216105 other downstream 1838669 37614168 ~ 37667254 (-) True LOC110537546
TU1220392 other upstream 1530724 41038866 ~ 41039931 (-) True G1071725
TU1221758 other upstream 2537721 42045863 ~ 42062632 (-) True G1073009
TU1223569 other upstream 3195861 42704003 ~ 42713923 (-) True G1074731
TU1224206 other upstream 4055643 43563785 ~ 43564240 (-) True G1075335
TU1224273 other upstream 4152417 43660559 ~ 43660837 (-) True G1075399

Expression Profile