RNA id: XM_021623763.2


Basic Information

Item Value
RNA id XM_021623763.2
length 4107
RNA type mRNA
GC content 0.54
exon number 25
gene id LOC110537607
representative False

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 39518597 ~ 39546033 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGCGTCCGTTTTTTGGACAGGCGAAAACGCTCTTCTCAGCTCTGCTTGGGTGTGGCTGTTTGAGAGATGAACTTTTTTTCAAATCCGAAGTGTAGGCGTCTGGGGGAAATAAACAAGACATTCGGCCTTTTCTGCCATGAGAGTTGAACAACAGAGTGAACATGGGGAAAACAACGAATTCGGTCAGCCAGGGGGACATCAGCCATGCTGTTGGACTGCTGACCACACAGCCTCCAGAGGAGGGCCAGGGGACTGAGGAGACCGCAGACACAGAAGCCAACAGGGAGACCCAGAAAAGGGCTCCACCTAAAGATGACCTTCAGACAGCCATCGAGCTCAGCTTGCAAAAATCCCAGGCAGAGGAGATAGAGCTCAACAGAGCACAGGAGGACAGGGCTGCACGAGTGAAGAGGAAGAGCTGCGAGGCCCAGGGAGAGAGCTGCAGCCCTGCAGACTGGATCCGCCAGGATGGGTGGCCTGTGGGCATCCACAACATGGGCAACACCTGCTGGTTCAGTGCCGTTATACAGTCCCTTTTCCACCTGCCCGTGTTCCGCAGATTGGTACTCAACTACTGCCTGTCTGAGCGAATCCTGGAGAAGTGTAAGAGCCACTCGGACAAGAGGAACATAGCCTTCTTGCAGGAGCTGCGCTGTCTCTTTGCTCTCATGGTGGGCTCCACTCGCAGGTTTGTGGACCCGTCTGCTGCCGTCGAGCTTTTGAGAGAGGCTTTCAGATCCAGTGAGGCCCAACAGGATGTGAGTGAGTGCACCCACAAACTCCTTGACTGGCTTGAAGATGCCTTTCAGCTGGCTGCCAATGGAAACAGCCTAGAAGATAAAAAAGAAAATCCAATGGTTCAGCTTTTCTATGGGACGTTTGTGGCAGAGAGAACACATGAGGGCAAGACCTTATCCAACATCGAGCAGTTTGGCCAGTACCCCTTACAAGTCAACGGTTTCAACAACTTGGAGGAATGTCTGGAAGGTGCCATGGTAGAGGGGGAGATTGAAGCCCTCCATCCGGATCAAACCATTTCATCTGGCAGCAAGAGATGGTTCTCAAAGTTACCACCAGTGTTGACCTTTGAACTGTCCAGGTTTGAGTTCAACCAGTCGTTAGGACGCCCAGAGAAGATTCACAAGAAACTGGAGTTCCCACAAATCATTTATATGGACAGATACCTTCACAAGAACAATGAGCAGACCcacaacaggagaggagaggtgaagcgACTGAAGGAGCATCTTACGGTCCTGCAGCAGAAACTGGAATGCTACAGAAGCTATGGCTCCGGACCGACAAACTATCCCCTGGCAGACATGTTACAGTACATGTTGGAGTTCGCCTGCACTAAGCCCACCAGTGTGTCCCCTGCTGAAGACCCGAGGCTGGCTGCCTCTTCCCCCACTCCCCCCAGCAGCAACCCCCAGCACACAGACGCCAACCCTGACGATACCAGTCAGTGTCATGAGCCAGGAGACGCAGGCCCGTCCGACAGCTCCACCTGTCAGCAGAAGCACTCCTCGAGCCAGAGGATGCCCGTCTACAAGCCCTTCACCCAGTGCAGACCCCCCATGGACGCCCCACCTCATCCCGCCCCCCACAGTGTGACGGAGGAGGAGCTGCGATTCGTCAAGACCTGCCTGCAGCGCTGGAGGACAGAGATGGAGAACAACATGGACGAGCTAAAGGCCAGCATCGACAGGGTCAGCCAAGCGCTGGAGGGCGTGTACTCGGATAACCGTCTGTGTCAGGTTCCGTACAGGCTTCACGCTGTCCTCGTCCACGAGGGCCAAGCCTTGGCTGGCCACTACTGGGCCTATATCTACGACCACAGCAACCAGTGCTGGATGAAGTACAACGACGTCATCGTCAGCGAGTCCTCCTGGGAGGAGCTGGTCAGGGACTCGTACGGAGGCATGACCAACGCCAGCGCCTATTGTCTCATGTATATCGACAACAGGCTGCCTCACCTAATTGCAGAAGACACAGATGACGAGACGGGCCAGGTCATGCAGGGCATGGACTCTCTGCCACCCATCCTCGGGCGCTACGTGCGCGAGGACAACCACTGGTTCCAGCAAGAGCTCAGGGAGTGGGAAGAGCAGTTATACCAGCCGCCACAGGAGGAGCCGGCCGCTCCCACAGCAGCCTCCACCTCCACTCGTGTTCCCAGTAAAAAAAAAGACGAGGCAGCAGAACCAGTCCCCCAACCTGGACCTGCCCAGGAACCCACTGGGGAGCAGGGACAGGAACCAGAGGCAGAGTTGGCTGTTAAACCGGCAGTGGAATCTGAAAAGCCTGTCCCAACAAGCCAGCCCCAGTCCCCAGTACCTGTGTCCCCAGTACCTGTGTCCCTGGAGAACGCTGGCAGCAGCCCAGAGGAGAGCGACCACCAGACTGTCACGCCAGAGCCCTGCCAACATACCAGCGAGGACAAGGAGGGGCAGCAACACAGTCAACTCCCCCCACCACAGTCTCCCAGCCCTGCAGCAGAGATGAATGGCCAGGCCCAGACTGCAGCTGTGACCCATGACCCCTCCACAGAGTTCACCACTGAGACCGACAGCGAGACTGGAGTCAGAGAGGCAGGGGCGGAAGCTGCGGCAGCGCCCGACACCCAGGCAGACAGCGAGGATGGTCAGGACGCCCTGCCGGCACCTTGTCGCCAGCAGCAGCAACCAGAGAACGTGGTGTTGGAGGTGGAGATCCCCAACGTGGGCAGGATCCTGGTGCAGGCTGACAATGACGGCTACAATGAAGAGATGATGCTCACTCCAGCTATGCAGGGAATCATTATGGCCATAGCCAAAGCCAGACAGGCATTCGACAATGAAGGCCCTGAGGCTGGCCTCATCAAGGCGTTCCAGGAGGAGTACTCCCGTCTGTTTGagttgtcccaggaggagaccaCTGCCCAGCAGGACCCACGCCTGCACCACGCCCTGGTCTACTTCTTCCAGAACAAGGCGCCCAATCGCGTCATCGAGAGGACCCTGCTGGATGGCTTCACCGACCGCAACCTCAGCTTCGACGACATGTCCATCAGTATCATGAGAGAGGCGCGCGCCAAACTACGCCTCATCAAGCCAGAGGATATGGATATGGAGGAATATATGCAATGGCATGACGACTACAGCCTGTTCCGGACAGTGTTTGTCTACCTGCTGACGGGCTTGGAACAGTACCAGCATGGAAAGGTGAGAGAGGCGCTGAATTACCTCAACCACGCCTACAAAGACAACACCATGCTactgagaagaggggagaagagaggggtggagCAGTCACTTATTGCACTTTACAGGAGGAGATGTCTCAAAGAATTGAATGACAATGCGGCCACCCTGTTCCGGAGCAGCGAGGTGAGCGGCGCAGAGGAGGGCGTGATCATCATGAACGAGGCGGTTATCCCCTGCATGCACCTGATGAGCCGGCCGGACATGATCAGCCAGGAGGACCTGGACACCATGGAGGCTATCCGCAGCCACTGGTGCTCCTACCTGGAAGTGGACCTGGATgACTCCCTACAGTTAAAGCTGGGTGAGTTTCTGCCCAGGGTTCTGGATTGCTCAACAGAGAGGGTGTTCTTAAAAGATCCACCAACGGTGCTCTCCAAAGTGCCCCACGACTTGTGCAGCCGCCTGGCCGCCATCATGGAGTCTATCACCAACACCTCTGTGGTCGCTGTCAAGTAAGACCAAGGGGCCACAGAACATTAAGTAGATTCTGAGTGACTTGAGGCAGAGTTTATATGGTCATATGATACTCGCAGACAcatcaagaggagagagagaaatgtctttattatacATTAATAAGGTATTATTGCTTTGAACCTATTTACGTATGTTTTAAGAAAGTGAAAACACAAGAAATAAGAGTTTGTTATTGTTTGTTAGATATTTTACATGTACCATGATACATTAGGATTGCAGTGAACAACAGGCTCTTGAAGATTTAGGTGTTTAGAAATTCAGCTTCCTTTGTCTTGTTTTGTATTTTCCTGTTTATATATGTAAGCCTTTCCTTCCACTCCTGTTTTCCACTTCTTGAAAACTGTGTTGACGCTCAATAAACTTTCTGTTCTTCTTTTCTCCTTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1218226 lncRNA downstream 1045 39517323 ~ 39517552 (-) True G1069652
TU1218224 lncRNA downstream 2725 39515662 ~ 39515872 (-) True G1069650
TU1218207 lncRNA downstream 13921 39504125 ~ 39504676 (-) True G1069635
TU1218181 lncRNA downstream 99253 39419107 ~ 39419344 (-) True G1069610
TU1218177 lncRNA downstream 102564 39415716 ~ 39416033 (-) True G1069606
TU1218253 lncRNA upstream 13930 39559963 ~ 39560182 (-) True G1069679
TU1218259 lncRNA upstream 18010 39564043 ~ 39564266 (-) True G1069685
TU1218261 lncRNA upstream 18968 39565001 ~ 39565209 (-) True G1069687
TU1218262 lncRNA upstream 19215 39565248 ~ 39565473 (-) True G1069688
TU1218268 lncRNA upstream 40507 39586540 ~ 39587460 (-) True G1069693
XM_021623760.2 mRNA downstream 10455 39505923 ~ 39508142 (-) True LOC110537606
XM_036937558.1 mRNA downstream 15785 39494196 ~ 39502812 (-) True zw10
XM_036937556.1 mRNA downstream 24576 39425122 ~ 39494021 (-) False ddx10
XM_036937557.1 mRNA downstream 24576 39425122 ~ 39494021 (-) True ddx10
XM_021623754.2 mRNA downstream 108828 39406573 ~ 39409769 (-) True si:dkey-183i3.9
XM_036937566.1 mRNA upstream 22328 39568361 ~ 39690332 (-) False LOC110537608
XM_036937567.1 mRNA upstream 27255 39573288 ~ 39689328 (-) False LOC110537608
XM_036937568.1 mRNA upstream 27255 39573288 ~ 39690332 (-) True LOC110537608
XM_036937570.1 mRNA upstream 181741 39727774 ~ 39933533 (-) False ncam1a
XM_036937583.1 mRNA upstream 181741 39727774 ~ 40043402 (-) False ncam1a
TU1218083 other downstream 180623 39336104 ~ 39337974 (-) True fkbp6
TU1217986 other downstream 409635 39108300 ~ 39108962 (-) True G1069456
TU1217947 other downstream 446125 39041520 ~ 39072472 (-) True LOC110537579
TU1216260 other downstream 1812226 37672182 ~ 37706371 (-) True LOC110539142
TU1216105 other downstream 1851343 37614168 ~ 37667254 (-) True LOC110537546
TU1220392 other upstream 1492833 41038866 ~ 41039931 (-) True G1071725
TU1221758 other upstream 2499830 42045863 ~ 42062632 (-) True G1073009
TU1223569 other upstream 3157970 42704003 ~ 42713923 (-) True G1074731
TU1224206 other upstream 4017752 43563785 ~ 43564240 (-) True G1075335
TU1224273 other upstream 4114526 43660559 ~ 43660837 (-) True G1075399

Expression Profile