RNA id: XM_036937566.1


Basic Information

Item Value
RNA id XM_036937566.1
length 7141
RNA type mRNA
GC content 0.45
exon number 7
gene id LOC110537608
representative False

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 39568361 ~ 39690332 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCATTGTGTTGATTTGCTAACCCGAAAGAACAGAGGAGTTAGTGCGTGTGAGAGCGGGCACTGTGAACTGCGTTACTATGCTGTAGCCCAATAACCACACATTCGGAATCAAAACGTGCAATTTAGATTGACTTTATCTTGTTTACAAAGATAAGTGAAGAAACTGCTGAGGAGGGAAAGCGAGCCTCATGAGTTGGCCTGGCGGATCTCAGCGACGTTATGGATTTGACTAAAATGGGTATGATCCACCTCCAGAACCCCAACCACCCCACGGTCCTGCTGCAGAAGGCCAACCAGATGCGTCTGGCAGGGACCCTCTGCGACGTGGTCATCATGGTGGACAGCCAGGAGTTCCATGCTCACAGAACCGTGTTGGCCTGCACCAGCAAGATGTTTGAGATTCTGTTTCACCGTAACAGCCAGCATTACACCCTGGACTTCCTTTCACCAAAGACCTTCCAGCAGATCCTGGAGTACGCCTACACTGCCACACTCCAGGCCAAAGTGGAAGACCTGGACGACCTGCTGTACGCAGCAGAGATCCTAGAAATCGAATACCTGGAGGAGCAATGTCTCAAGATCCTGGAGACCATCCAGTCCTCGGATGATAATGACACGGAGGCCAATATGAACGATGGCGGCACGGAGGAAGAAGACGAGCGCAAGGGCCGGCAAGGAGGGAAGAACGCTAAGAAGCATTCCATGGAGGGGAGCTTCCTTTCAGCCACCCAGCAAGCCTCTGCCCTGGACCAGAGCCCCTCCGTCTCCACATCCTTTGGGCTCTCCACCATGAGCCCAACCAAAGCTGCCGTGGACAGCCTGATGAGCATTggccagtccctcctgcagcagggCTTCGGGGGAGAGCACCTGACTCACGGCAACTCCCACCGCCAACTGATGACCGAGATCAAGACGGAGATGATGCAAGTGGATGAAGGCGGAGGCCACGAGAGCCCGAGAACCATGGAGTCCAGCGCCTCCAGCAATGGTGAGAGGAGCGGCGAGTTGGACAAGAACCGTGACGGCCCAGGGACCCCGACCAGGAGCAGCGTGATCACAAGTGCCCGCGAGCTGCACTACGTCCGGGAGGATGGCATGGGCGACCCCCAAGCAGATGGTGGCCAAATGGGTCTCGAAGCCATGGCTGGCATGACAGGCATGACTGAGAAACAGCTGACCTCCCTGTACTCTCTGCCTCCCAATCATAAAAACGAAGTTATGCGATCCATGCCGGCCTCCATGGCCTCTTCTCTCCACATGTCCCCTGCCCTGGCCATGTCCATGGACTTCAGTGCCTACGGGGGACTTCTGCCCCAGAGCTTCATCCAGAGGGAGTTCTTCAACAAGCTGGGGGAGCTGGCCGCTGGCATGAAGCCAGATGGCAGAAACCAGCACGAACGCTGCAACGTGTGTGGCGCAGAGCTACCAGACAACGAAGCTGTAGAGCAACACCGGAAGCTGCACAGCGGTATGAAGACCTATGGATGTGAGCTGTGTGGGAAACGCTTCCTGGACAGCCTACGCCTTAGGATGCACTTGCTGTCTCACTCAGCTGGTGAGAAGGCCATTGTCTGTGACCAGTGTGGGGCCCAGTTCCAGAAGGAGGATGCTCTGGAGGCTCACAGACAGATCCACACATgcTTGGACATGGCCATCTTCTGTCTGCTGTGCGGGAAGCGTTTCCAGACACAGCCGGCACTGCAGCAGCACATGGAGGTCCACGCCGGCGTGCGCAGCTACATCTGCAGCGAGTGCAATCGCACCTTCCCCAGCCACACCGCTCTCAAACGCCACCTGCGCTCGCACACAGCAGGTGACCATCCATATGAGTGCGAGTTCTGCGGGAGCTGCTTCCGTGACGAGAGCACTCTGAAGGGCCACAAGCGCATCCACACCGGGGAAAAGCCCTACGAATGTAACGGCTGTGGGAAGAAGTTCAGCCTCAAGCACCAGCTGGAGACCCACTACCGTGTGCACACAGGTGAGAAGCCGTTTGAGTGCAAGCTGTGCCACCAGCGATCTAGGGACTACTCGGCCATGATCAAACACCTGCGCACCCACAACGGAGCGTCGCCCTACCAATGCACCATCTGCCTTGAGTACTGCCCCAGCCTCTCGGCCATGCAGAAGCACATGAAGGGCCACAAGCCCGAAGATGTCCCCCCAGACTGGAGGATAGAGAAGACCTACCTGTACCTCTGCTATGTCTGAGACCTCCAGACGACAGCCCGGGGGAAGGAAgacaggcagaggaggaggatggggctgAGGAAGGAAGGGGCTGAGGAAggaaggggaggatgaggagaaggaggaggaggacgaggccTGTGGCGAAGAAGTCAAGCGAGATAATCCATGAGATGGAAGCACAGGCGGTTTTTGAATGCGAAGAGAGCGAATGAGCAGAGGGCAAAGGTGGACACAGTGAGGAAAAGGGCTGGGCTAGGCGCAGGAAAACTGAGGTTCTGACCGAGAGGACATTTCCCCTTAAAATTCATGTCGTTCAGTACATctatctatgttttgtttggaGTTGTCAAATTGCCTAACACAGAACCCGTCGGTATGTCGATGGAGTTGTCCTTAAGTCTACCCACAGACTTAAGAGATGTCACCCAAGCCACACTTGTAACTGAACTGATTCTCAAAGGCTATCTGAACCCACACCTCCCCATCATTTTGACCACTGGCTCTCCCTAAATGTAGTTTTGACATGGAATGGAATTGTATCCTACTGTAACTTGGGTGGGTCATTGCTCTCGTTCCATGACACAGTACTACAGATCCCCTCCTGATTTGATTGGATTAAACTGGACACCAAGTCATGTTCTGCTTGAGGAACATGTTGCAGTTGGCCACTACCCAAGCCATTGTTTACCAGAGTGCTCCAAAATGGAGTCTTCAGACCTGGTGGAGAGCACTGGGGGAGAGCACACAGAGCACTTAGGACCCTATAGTGGAGTAGTGCCATTCAGATAGCCCCCGAGAATCAGAGCCTACGGGCCAGACCATGTGGCACATTTCAGCCAGCCCTATGGAAAAATAGCACCATTTATTGTACTGCATTAGCCGAAGCGAAGTTGAATTTGATTGGGGCACAACACCTTCGTACCCACGCAGAGGGTTGTCTTTTGTACAGCAAGGGAGATGAACAGAGGATGATATTCCCATATCGGTCAGGTTTCACCGGGAACCTCTTGAGAGTCAAACCATGACTGTCAATTTTTTCATCTCTGTATCTTTGGCTCCGCATCATAGTTTATCATAGCTTCATTGCACAGGTAAAGACACATTACGACGACAGTCTCTGTTTGATGTTTATATCAGATCTATTTTTGAGGGGTTTGCTCGCTGCGAAGCCGCTGTTCTTTTATCTCTTAAACCATAAATCTCTATACAGCATTAACTGGAGATGTTAATTTTTTCCCCGTTATAGATACTGGACTGATATTAATATACGTTTAACCAGATTATCATCAATTACACTAAGATTTAGTACATGGACTGACTCATAACATTTAACGATTTTCTCACattaataatctcataatctctATATGCCATTGTGATGGAGACCAAAATGACAAAGGCTGCTGTGGATTGCTCCAAGGGGTGGTCGTAATGCCTTCATAATGCAATTATAAGGAGATATGGCACCTGTTACAACAGGACATATATACTGTTATGTCGCGTGAAACCATAAATGTGACACCAGGTGGAAAATTGTGTTTCATGCGCAATTGTAACAGTGCTATATCAGTTGTCATAAGTGTCAAATATGTTGTCATAAGTTGTCGTAACCTGTTACGACAAGCATTATATCTGTTCATATGGCAGCATAATGAAGACATTATGAGCACCACTGTCAGTTCAGTGTTACCATGGTAATCACATATCTGAATGATTAGCgggagaggggggtgggtggCTTCACTGATTGGAAGAGACATGGCCTGCCCAGCCCAGGGGGCGACCAGTAAGAAGACAGAATAAATCAACTCTTTATATATGGTTTTGTTCCTTCGCTTTGTCTGTGTTTCCTATTATGTCTTGATTTAGCTCAGCACATTGTACTTGAATTACCTCGTTTTTTTGTGACCTCATGTGCTTGTGTTTTTATTTCTtgtattgttttttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtccgaaaGCTGCGTTGTTGCGCGAGGGAGATGTGACAAAGCAATGTGTACGCGAAAATTAAGTGCCACGGTGAAAAGAGATTTTTATTGTTGTGTATTTTTGTGCATTATTGTTACCAAACTTGGTATTTTTTTATGAACCTTGCTTGTTGAAAAGCTGGTGGGATCGGTCATTGTTTAAAAGCTACCTCTAAGTTGTTTTGTTTGAATTTTTGCAAAAGCACATTTGTTTTCTGTGTGTTTTGCATTATTGCATCATTGCAACTTCATCTCATGCTTTCAAGTGTTGATTTATTGTCTTTTCACATCTGTAAGTGACATTTATATAAAGGGTAAGAGATGGTAGATATTGTTagaaaaaaattaaaattaaacaaGTGTTTATTCTTCTCTTACAGTCTGCGTCCGTCCTCCCCTTACAGTAACCTTAAGAGCAGAGAAGAGATTTTAAGGCCTTAAGTATGGGGTAAGAGGGATGAACGCAGTAGAAGAAGAAATAGTACTTATAAGAGTTTAAAAAAGCATTAAACTTGAAAATATGTGAATAGAATTGTAGTTTTGTAATGTGAAAAAAAGAAGGTCATGTACACAGCGATGTAGTGTGCCCTGGACAATTGGGACTGCAAGTGGTAATCAAAGAAGAAAGGAAGGTTAGGAAAAAAAGAGATCCTCTTGGTCGACAATTTCTCTCAAAGGAGTGTATTCCTGAACAAGAGCCAACAGAGGCAGTTTGATATATAAAAATGGTGATATTTTTGTATTCGGTGTCAGTCCCTTCCCATTTGTCGAGTTTCAGCAGGGCAAATATTTgtatttcttcttttttttacctcgttttttttcctctggttttgAATCTTTTGCCTTGCTCCTCTTTGGTAATGTTGgacgtatgtatgtgtgtgtgtgtgtgtgaacatgttgTATGTAGTAAGTGTTGCTTTCTGGATGTCAATGCATTGTAGGTGAAGGACTAAATCTgccaaaaaaaataaaagagaTCATTCAAAATGGATGGCTGGGAGGCTGCCGTCGATCAATTAGTACACGTCATTCACAGTTTTATTGTCAACATTTAGTTTTTGTACTTGAAGTGACAAAAAAAGGATGACATGGTCATAGTGGCCCATGGTTGTCTCGTCACTGATTCTCCAACACTGTGAGCTGAGGGCTTTCCCTCGTCCAATTTTCACCAGAATAATAACTTCAGTCACCATTCAGTGTGGCAGGCCAGAGAGCCCGAAACGATCACATCACACTTCAATGACTAGAGGTATTCAATCACATGCTCTTATTGTTGTCTGAATGTTTTAtactttttggtgtgtgtgtgtgtgtgtgtgtgtgcataaatgAAAGTGCGTGTGCGTGTATTAATGAAAAATGCACTAATcagatacaaaataaaaaacaatgctCTATGCTACTTTTCTCTCGACATGTTGAAAGAAAACACATTGGTATTGATATAGTTCTTCCCTCAATGTTACTCTGTTTCTGTAATATCTTTGTGCCTAAAATGGAAATTGTTCAACAAAAATGTCCATCTATATCTGCTTAGTTTCTGTACTTTCAGAAGATAATAAATGGTGTCTCCAGCACTCTAGGGATGTCATGACGATTTGAGATGACCTGATTTTCTGATTTAGAATCAAAAAGGAGCTGTCATCTAGGACTGCTTTAGCCTAAAATTGGTAGTGGGCAAAACCACCTTTTGATGTTTAGTTTTTTGTTCTTCGTCTGTAATTGACACCCAAAAGCAATGTAATTCATTTACGCACAAACAGCAAGGAAGAAAAATGTCAATTTAAAGATGATAGAACAGTCCCGGGCCATGGAAATAGTATGCATTTTTTGTTTTCAATCTGTTCTGAAGGACATTTGCCTGTTCATTTTGGAAATCAAAGTCAAAGTTTGTTTTTCATTTGATAATATTTTGTTGTCAGCAACAGGTTTGCTGAGCAGTTAATGTCCTTCCAACCACTTTGGCAGCTTGTCAAAACCATAGTGTTGCCCCAGCTTAACATTAGGACTTTTCTGTTAAGTACTTGTTTCCAAAttgcattaaaaaaatatattttttaaagctgtACGAAATCATGGCATCCCTGGAGTAGGCACTCTGTGTTTCAGTGTGGTGTTCTAGAACGAGTAGCCATTTTATGCAGTGTTGCCATGCATGTGCCATTTGAGGTCTAAACTAAACTGTTTGAGTAACAAAGCACCAAGACATTGTCTTTTTTATATTGGCACTGAGGACCAATTGCCCTGTCGGACCAAGCATTACAAAGCTTTTTATGTAACaaagctttctctctctttctctggcttgTCTGTGATTTTGTTTCTTTCTTCCTTGTTGTGACAGCACAAGTGCCAGTCGAGTTGCTCTGTATTAAGAAAATAGTGTTTTTATGATTTGAATTGTTATAGTTTTCGTCTACCTCAGCACCTAATCTTAGCCTAATCTTAGAAGGTGcccaattattattttatttttctcttttttttgttgtcatttgTATAAAAATGATTTTGTTTTGCATTAGAGCTTTGCCAAGGTCCTCTGTCTTTTCCAGCGACGTGCTGTGTCTGTGATCCTGCTTCCCATGTGCGAGTTGTGCCACGGATCCCAGCATCTGTCTGTTGATTTAGAGTGGTTTTTCTTTCAGTTTAGGATCAGACACATCTCTTTGTAACATTTCAGTGTTCTCTGAtggagtgtaaaaaaaaaaaaaataaataaaagagatTAAATGCTGCAGGTTTTCTTCTCCATGTTGTCACTAAGTACATTTTGTGCCTTCGATAGTGAAAGATAATATTTTTTACATCCTAACAGTAGATTGTTTTGTAGTgaacattttttgtatttttatttatgaGTCTCATATGGAAAATAACAATGTTCAGTTGTATACCTTCAATCTGCagttagaaaataaataaaaaatcgaCTTgagt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1218262 lncRNA downstream 2888 39565248 ~ 39565473 (-) True G1069688
TU1218261 lncRNA downstream 3152 39565001 ~ 39565209 (-) True G1069687
TU1218259 lncRNA downstream 4095 39564043 ~ 39564266 (-) True G1069685
TU1218253 lncRNA downstream 8179 39559963 ~ 39560182 (-) True G1069679
TU1218226 lncRNA downstream 50809 39517323 ~ 39517552 (-) True G1069652
TU1218573 lncRNA upstream 25955 39716287 ~ 39716539 (-) True G1069955
TU1218538 lncRNA upstream 37445 39727777 ~ 39736824 (-) True ncam1a
TU1218724 lncRNA upstream 253886 39944218 ~ 39944622 (-) True G1070100
TU1218847 lncRNA upstream 364290 40054622 ~ 40055113 (-) True G1070221
TU1218910 lncRNA upstream 452199 40142531 ~ 40142744 (-) True G1070284
XM_021623761.2 mRNA downstream 22328 39518597 ~ 39546033 (-) False LOC110537607
XM_021623763.2 mRNA downstream 22328 39518597 ~ 39546033 (-) False LOC110537607
XM_036937559.1 mRNA downstream 22328 39518597 ~ 39546033 (-) False LOC110537607
XM_036937560.1 mRNA downstream 22328 39518597 ~ 39546033 (-) False LOC110537607
XM_036937561.1 mRNA downstream 22328 39518597 ~ 39546033 (-) False LOC110537607
XM_036937570.1 mRNA upstream 37442 39727774 ~ 39933533 (-) False ncam1a
XM_036937583.1 mRNA upstream 37442 39727774 ~ 40043402 (-) False ncam1a
XM_036937582.1 mRNA upstream 37442 39727774 ~ 40043407 (-) False ncam1a
XM_036937581.1 mRNA upstream 37442 39727774 ~ 40043473 (-) False ncam1a
XM_036937579.1 mRNA upstream 37442 39727774 ~ 40043482 (-) False ncam1a
TU1218083 other downstream 230387 39336104 ~ 39337974 (-) True fkbp6
TU1217986 other downstream 459399 39108300 ~ 39108962 (-) True G1069456
TU1217947 other downstream 495889 39041520 ~ 39072472 (-) True LOC110537579
TU1216260 other downstream 1861990 37672182 ~ 37706371 (-) True LOC110539142
TU1216105 other downstream 1901107 37614168 ~ 37667254 (-) True LOC110537546
TU1220392 other upstream 1348534 41038866 ~ 41039931 (-) True G1071725
TU1221758 other upstream 2355531 42045863 ~ 42062632 (-) True G1073009
TU1223569 other upstream 3013671 42704003 ~ 42713923 (-) True G1074731
TU1224206 other upstream 3873453 43563785 ~ 43564240 (-) True G1075335
TU1224273 other upstream 3970227 43660559 ~ 43660837 (-) True G1075399

Expression Profile