RNA id: XM_036937570.1


Basic Information

Item Value
RNA id XM_036937570.1
length 6427
RNA type mRNA
GC content 0.48
exon number 24
gene id ncam1a
representative False

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 39727774 ~ 40043489 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGTCCTCACTGTTCTCCTGCACAATAATGCACCTCCGCTGGCCTTTCAGCTACTCCGAACCTCTTGCCTCCCTGCAGGTGGAGATCACCCCGATGCAAGGAGAGATCAGTATGGGGGAGTCAAAATTCTTCCTCTGTGAAGTTGTCGGAGATGTAAAGGACATTGATTGGTATGCCCCGAATGGCGAGAAGCTCCTACCGAACCGACAGGACATCCTCGTGAACCGCAACGACGAGTCCTCGTCCACTCTCACGATCTATAACGCCAACGTGGACAATGCCGGCATCTACAAGTGTGTTGCCAAAAATGGAGACAAGGAGTCTCAGGGCACCGTCAACGTTAAAATCTTCCAAAAGATAACCTTCAAGAACGCCCCTTCCCCACAGGAGTTCAATGAAGGAGATGACGCTGACATCATCTGTGACGTCGTCAGCTCGCCTCCTGCTGACATCATCTGGAAGCACAAAGGCTCAAAGATCCAGGTTGCAAAAGACGTTCGATTTAAGATCCTGACCAACAACCACCTCCAGATCCGAGGCATCAAGAAAACAGATGAAGGGGCGTACACCTGTGAGGCTCGTGTAATGACCAGGGGAGAGATTGACCTAAAGATCATCAAGGTCATCGTCAACGtgCTCCCTAGCATCCGCACCAGGCAGTCAGAGATGAATGCCACGGCGGACGTCAACCAGTCTGTGATGCTGGCCTGTGACGCTGACGGCTTCCCTGAACCCACAGTCACCTGGGCCCGTAACAACATTGTCCTTGAGTCGGACGATAAGTACGGCCTGAACAACGACGGCTCAGAGCTGATAATAAAAGATGTCAAGAAAGTGGATGAAGGAGATTACACATGCATCGCCCGGAACAAGGccggggagaaagaggaggaagttaGCTTGAATGTGTTCGTGCAACCTAAGATCACCTACCTGGTCAACCAGACTGCATCAGAGCTGGAGGAGCAGATCACCCTGACCTGCGAGGCCTCAGGAGACCCCACCCCCACCATCACCTGGAGCTTTGGCCGCAGGATCTTCACagagggagagcagGCTTCTTGGACTCGGCCTGAGACGTACGAGAGTCTTGATGGGAATGTTGTGGTGCGTAGTCACGCACGGGTTTCCTCTCTCACCTTGAAGTATGTCCAGTTCACCGATGCCGGCCACTACCTCTGCACTGCCCGCAACTCCATCGGTCAAGACCAGCAGACCATGTACCTGGAAGTCCGCTATGCTCCCAAGATCCAGGGCTCGGTGACGGTCTACACCTGGGAAGGGAACGCAGCCAACATCAGCTGTGAGGTGCTGGCTCATCCGGGAGCCTCAGTGGTGTGGTTCAGAGATGGCCAGCAGCTGTCTAGCACTAACACCACCAACGTCAAGATCTACAACACACCAGCTGTCAGCTACCTCGAGGTCACCCCAGATTCCCAGAATGACTTTGGAAGCTACAACTGCACAGCTACCAACATGATCGGAGCAGAGTCCAAGGAGTTCCTCCTGATCCCAGCAGATGTGCCGTCGGCACCCGCCATCGAGCGAGTGGAGCCCTTCTCCAGCACTGCCGTTGTGGAGTTTGAGGAGCCCGATGCCAGCGGCGGCGTTGCCATCCTCAAGTACCGGGCAGAGTGGCGCATGCAGGGTGAAGACTGGACCGGCAGGGAGTACGATGCAGAGGAGGGCCTGAGCATGATCACCATCGTTGGCCTGAAGCCCGAGACCTTCTATGAGGTCAAGATGTCCGCCATCAACGGCAAGGGCGAGGGCGAGAGCAGCCCTCCCCAGAACTTCAAGACTGAGCCAGTCCGCTATGCTTTCACAAGTGGCATACCATTTCATTACTCTAACGTGGACTCAGTTTCGTCAGTGACACCAACCTTCATTCCTTCAACAAGTGCAGCCCTTAAAGGGGAGCCCAGTCCCCCTAAACTGGAGGGCAAGCTGCAGACCATGGGCAACGCCCTCAAGGTCAACTGGATCAAGCAGGACGATGGAGGCTCGCCCATCAAACACTACCTGATAAGATACAGGGCTAAGCATGTTCCGGACTGGAAGCCGGAGATCCGCTTGCCCAACGGCAGTGAGTACGTGGTGCTGAACAGCCTAGACTGGAACACGGAGTATGAGGTATACGTGGTGGCCGAGAACCAGCAGGGCAAGTCGCAGCCCGGCACCCTCTTCTTCAGGACTGCAGCAGAGCCCACCGCCATCCCAGaCACTATGCATAGCGGCTCAGGCCTAGGCACAGGGGCCATCGTGGGGATCCTCATTGTGGTCTTTGTGCTGCTGCTGGTGGGCGTCGACGTCACCTGCTACTTCCTCAACAAGTGCGGCCTCGTCATGTGCATTGCCGTCAACTTCTGCGGCAAGTCCGGACCCGGAGCCAAGAGCAAGGACCTCGAGGAGGGCAAGGCGGCGTTCACGAAGGATGAGTCCAAGGGGCCCATTGTGGAGGTGAGGACGGAGGAAGAGCGCACTCCTAACCATGAAGGAGGGGGGCCTACAGAGCCTAACGAGACCACCCCTCTGACTGAGCCTGAGCCCGCTGCTGACACTACCGCCACGGTGGTGGACTTGCTCCCTTCTGTCGCCACTAACTCTGAACCTGTCACTGAGAGCTTTAGCACAACCCAGAACAGCCCAACTAGCGAGAGCACCACTCTCACTTCCAGCACAGCTGGCCCAACCCCTGTCCCGGCTGAGTCCAAAACTGCCCCCAAAACCTCCCCTAAAAGCAAACCTGCCCCCGTCCCCCAGTCCAGCACGGCCAAACCTAGCACCCCCGCCTCCCAGCGTGCCACCCAATCCGACGTAGCTCCCCTCGTTGACCTAAGCGAGGCTCCTAAAGCCACACCCTCGTCTGACCCCAAGCCCCCGACCCCCACAGCCCCATCCTCGAAGCCAGTCAAGGtcccctccaacccctcctctGCCACAGCCGATGCCGCACCACAGAGCCAGCCCGAGTCTGTCCAAAGCCCCTCTGCCACCAGCAGTCAGAATAAGGACTTACAGATAGACGGCCTGGCCAAGGATGTGTTTGATGCCCCAGGCAAAGGCTCCAAGGCCCCGGCAGACTCCACTGCTGCACCCGCCCAGGACGAcGGTAAAATCATGACCGGCGATAAAAGTAAAGCCCCGGAGACAGCGACAGAGGTGAAGAAAGCCCTGTCTGAGGTTAAGACAGTCCCCAACGAAGCTGCAAAGACAAATGGCAACGAGAGCAAAGCATGATCCCGACAGCGAGAAGGGAGGGGGTCGGGTGCACCACGGTCACGGACCTCCAGAGGGAAAGAAAACGTCACACACCACTCCGTCAAACAACAAAAAGCTCAATAAAAGGGTGTTTTTCTTCAGTGTCTTCTATGAGTTCTCAGAGCAAAAGATGAGTTTCTTAGACATGTAGAGCGGGAATAAGACCTAATGCACCTGCTTTAGTGTTTCTTTATCTGTCATTCCTTTTGTCATTTTCTCTGTGTTCACGTGAAGGAAAATCCTTACCTCTAGTTCACTCTCCTTGACCTCCTTTTATATGTAACAGCAACGTTACCAGTCTTTTAAATGGGACAGAAGCTAAGTATCATTGGCACAGATAACCATGGGAGTTGTAGCTTTACTTCAGAACAATGCCTTTACGATGTGCACACACCTGACCCACACACTATCTCCAGTTATGTTATTTTTTGTTATACAGTAATGCCATCGTTATTTCCACTGCTAATGGATTTTTGGGTACTTTTTTCATGTTTTTGTTGTGTGTTTAAATAATGTGCAGAAGTAACTTGCATGTTATTGTATCTTTATTTTTCATGTATAATTTGAGAACTAGAGAGAGCATATTTTTTCTTATGTGGTTgtcttttgttttatttttgttctTGAATGTTTACATTGTGTTTACTCTGTCCCACGATTGTGTAGACACAACAGAAACAAAAgaagacacagcagagagacaatGTTTATTCCACAGTTATAGAGGTCGGAGTTGGCGGTTAGCGTTACGCAATTTAGCGTCTCTAAGATTAAATGTTTTGGTTAATTTGTTTTGGCAAATATATGAACACACTTTCtctaacacacaaatacacacacctcTATATCTTCTTAATGAATGATCCTATTAGATGAGCTGTGGACCTGTTCCACTCcaggggtttcagggctcagCTTTAACCCCGGAAATGTTGCAGGTCCCAAGGGGTCACAGGAAGAGACGGGCATACAGAGTAGCATGGCTTATGGGAGAATGATGTAATCAAAGGCCGGATATGAGTGGTAGCAGCTGAATGTATGAACAGAAGTCCTTAAAATAGCCTAGAAACAGTCTTATTTATTCCCCCATTTGATGGCTTTGTCCCATAACTTCAGAATACTGTGCCTGTTGCGAACAGCACTTCCAATTTAGTGATTGATTGAGCTTCATCTCAAAATGCAAGGgaataaaaatgtatgttttgtgtttttcagcATATTTTATGCATATAAACAAATGTAATGGCCGGATTTATACATTTCTTATTTAAGCCATAGTACTCCGGTGTGGATTTGTTCAAATCAAAAAATATTAAATCTGACCTTTTTGTACAGCGTTTCTCATACTTTAGACTGCAAGCTTGTGCACTGTGAATGCGTGAATATCCTAGTGTGAATACGTGTTCTTTGTCATAGAATTCAAATATGCATAGTTTGGTTGTGAAAGGTATAGCTAATAGTACAGACAACAAAAAAGTTCCATGAAAAACCATGAAAGCAATGAGCAGACGAAAACAAGAAAACAAAATAAGAAGACGGTGCCTTCTGAAACGTCAAAATGGCAGCACGCGTTCCATCCTGCTCAGTGTCTGCCTGTTCTAGGAGGTGACAGCATAAGGTTTCGTGTCCTAGTTCTGTCCATTGCCATTCCTTCACTACACAGTCCAAGGAAAACACACAGGAAGAGTACTGACAATGTAACTGGTTTGTAAACTGTGAAATGACTAAACCGCTGCGTCATTGTGTTAGTGCATAAACTcagctcggggggggggggtgaaaatgGAGGTGGTCAGTTGTGTCCACATCGTTTTCACAAGGCTCCTCATTCACTGGTTCTCCATGTGACTAAtgcaaaataaaatgttatcCCCAAACAAACAAGGAAAAACAACATCCATTCCAATGATTAACTCATGATCACTACACCAAAAGTTCTTTCACACAAACACAACTTTGGACATGATCAAATATTTCCAATCCCAATTGGCTCAAATGACTTGCAGTCACGGTTTGTCTTCAAAACCGAACATCAttaatgaagaaaaaaatatttttttcttgacCTGAAACAAGCATGCAATGTACTCTTATCTTGGATTTCATTGGTGTGGCAGCACTGAAAAGTTCCTGAGAAAGGAATTGACCAAGGCTTTATCTGTTGTACATTGATCTTTTGAAGTGTTCTGTAAACTGTCTGTTCCGAACTTTTTTGTTTTCTTCAAAATAGACATCAAGTGCTTTTACTCCACAAGGCTCTGTAATGTAAAGAGGTGTGTTCAAATGACACAGTTTCTGATTAAATGTGTATAAACCATTCCTAACCATGTAATAAAAAAAAGATATGGGTTTCTCTTGACCCCAAAAAAGCTGGACTGCTGTGGCTTTTGACCTGTATGTTCAAATGCTATGATAATGTGGGACCAATTCCTATGTACGTTTACATTGACGTTTTCATTAGTGTTCTGTGCCATGAAACTTATTTCAGGAAAGAAGTCGGGGGAACAAAAAACGATTTTCAAAAACTTTAGAAGGGAAAAacgctctttctctctgacttcCTGAAAGTAACCACTCACCTGACACCGTTGGCTTGGTGAAAGTGAGGTGTCACCGTATTGCTTCCACCTCACCAATCATGCCAGTTTATTTCAAGGAATACAGGAAGTACGGAAGCGTTTTTTCAAGTATTTGAATGGAGTCTAGGGCCATGTTCAGTACGAAAACATTGTGGAATGTTGCAGATAGAATTGCCATGATTAGAGATTACGTGATTGCTTAGTCTATATAAAGATAGGTATTTTTGTTCTACAtcatacatttctatctgaacgttggCCAATGTTGTGACCTGCTGAACATTGCCCAGGCAATCCAATAAGGTTTGGAGTCTCTTACTCCGATAGCCAAACAACAGTTGGTAATGTGACATTTTCAGTCAGATAAGGGCGTTTTCCCCACCAAGATGTTTCCCATTCTCATTCTTACCCACCATTCCCTGCTTTTGGGGCCTTCTCTCTTGTATACAGATTTTTACTAAGTGAAACATTGGTACCACCTCTCTTTCCACTGTCACTGGTGTAAATACTGAGTACTAACCGACAAAAAAACAGTTTGACTTTGCATTCTGTCAGAAATTGTGTTCAATAAAGTTAAAGGAAAAATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1218573 lncRNA downstream 11235 39716287 ~ 39716539 (-) True G1069955
TU1218268 lncRNA downstream 140314 39586540 ~ 39587460 (-) True G1069693
TU1218262 lncRNA downstream 162301 39565248 ~ 39565473 (-) True G1069688
TU1218261 lncRNA downstream 162565 39565001 ~ 39565209 (-) True G1069687
TU1218259 lncRNA downstream 163508 39564043 ~ 39564266 (-) True G1069685
TU1218724 lncRNA upstream 10685 39944218 ~ 39944622 (-) True G1070100
TU1218847 lncRNA upstream 121089 40054622 ~ 40055113 (-) True G1070221
TU1218910 lncRNA upstream 208998 40142531 ~ 40142744 (-) True G1070284
TU1218923 lncRNA upstream 218651 40152184 ~ 40152501 (-) True G1070297
TU1218930 lncRNA upstream 222265 40155798 ~ 40156116 (-) True G1070304
XM_036937566.1 mRNA downstream 37442 39568361 ~ 39690332 (-) False LOC110537608
XM_036937568.1 mRNA downstream 37442 39573288 ~ 39690332 (-) True LOC110537608
XM_036937567.1 mRNA downstream 38446 39573288 ~ 39689328 (-) False LOC110537608
XM_036937560.1 mRNA downstream 181741 39518597 ~ 39546033 (-) False LOC110537607
XR_005034984.1 mRNA upstream 39509 39973042 ~ 39979531 (-) True LOC118937672
XM_036937596.1 mRNA upstream 1159649 41093182 ~ 41098902 (-) False sc5d
XM_021623781.2 mRNA upstream 1159649 41093182 ~ 41101786 (-) False sc5d
XM_021623779.2 mRNA upstream 1159649 41093182 ~ 41101891 (-) False sc5d
XM_021623780.2 mRNA upstream 1159649 41093182 ~ 41101891 (-) True sc5d
TU1218083 other downstream 389800 39336104 ~ 39337974 (-) True fkbp6
TU1217986 other downstream 618812 39108300 ~ 39108962 (-) True G1069456
TU1217947 other downstream 655302 39041520 ~ 39072472 (-) True LOC110537579
TU1216260 other downstream 2021403 37672182 ~ 37706371 (-) True LOC110539142
TU1216105 other downstream 2060520 37614168 ~ 37667254 (-) True LOC110537546
TU1220392 other upstream 1105333 41038866 ~ 41039931 (-) True G1071725
TU1221758 other upstream 2112330 42045863 ~ 42062632 (-) True G1073009
TU1223569 other upstream 2770470 42704003 ~ 42713923 (-) True G1074731
TU1224206 other upstream 3630252 43563785 ~ 43564240 (-) True G1075335
TU1224273 other upstream 3727026 43660559 ~ 43660837 (-) True G1075399

Expression Profile