RNA id: XR_005034984.1


Basic Information

Item Value
RNA id XR_005034984.1
length 3033
RNA type mRNA
GC content 0.41
exon number 3
gene id LOC118937672
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 39973042 ~ 39979531 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACATTTAAAACCTTGAAGTTGCCCAGGAGTTCAGGCTCGATAGTGTATCTGATAAACATTTAAAACCTTGAAGTTGCCCAGGAGTTCAGGCTCGATAGTGTATCTGATAAACATTTAAAACCTTGAATTTGCCCAGGAGTTCAGGCTCGATAGTGTATCTGATAAATGCTTAAAGAGTTTAATCAAGCTCCCGCACGGACAGTCTCTTTTTGTTCTGAGGAGCTCAGAAAATGAAATGAAGTGACAATACTTAGCCACACGCCTTAACTGATGTCTTTATCTCTTTCCTTCTGCTCTGGCAAAAGGTAGTAACTACAGAATTAGTTAGAAAGAAAGTGAAAACTGAGAAGTGTGCTTTCCCGGCTATTGTCATGGAAATATGCGTCCTAACCAAATGCTTGTGTATATCCATCCCATTAAGCACGTTTTAGTAGTGAGAGACAAATTGGTTTGACACTAGTAGAGACACACATCCTCTTCGCTAAGTGACAGACTCTGCAGCTTGATCGATGAAGGGAAATGGCCAATCCAATTAGATTTGGATTGGTTTAACATGAGCATTATTGAATTAAAAGTCTTTCAGCTTTCCCATTGATCCTGCCAGAGCTTAGGCTGAGtaggcactgtacatatctagGCCACGCCCTCTTTACAGGACAATACATGTGGATAAGAGCCCGGTGTAAATTGTAGTAATGGGTAAAAAAAGCTATACAGTTTACATATCGCAATAGTTTTGGGGGACAATATgggactcgtttcaggaaactaggcatatgtcgcaagcCACTACTTCACAGAAGAGGCAttagaatgttttattttttttatcaaaatgattTTTTTTGGGCAGAATGCCTTCTGGACCACGTGAAccttcatgtgccttaataagaaACTtgcatgccatctgtaaataggaATTAAAAAAAGAATAATCACAAGCCTAGATGtttttagccacagaaaaaggagggaaccttcccgctagacatgattggctgagataatgaatgggctggacaAGCGATGAGATGATTTTGGATTGATCGACCATGTAGCACATTCTGTCTATAACATAGCCTGCTCGCTATGTGTAGATACTCCTTTCtactgcatttttttttaaagatattatCGAGGTGTTTCTCCGGATTACatattcaaactaagggcaaaAATGGAATCCGTGACAGAGGGAAAAAGATCTGATGAATCTTATGGCATTgcacacggtcagtgtgaaccagagcGATTTGACACAACGGGCCAAGCAAGCTGTACAAATGAAACGGAAACGACACAGGACGTCCAATTTAATGAAATGGGTTGCAGTCTGCCGTGAACCGTTCATCTATGAATACGGGTAAGAGTccagctacattttcagatattatacatttcagGAATTTAGTCAGGAAgtcgttttcattgcaagttaaagccagctagctaacattagttggCTGActcactagctaacattacgtttaTGATCTGTGTATTAATATTATCTCAtgaagccatttgcattgctacttatagcctaatgttagatGGCTAACTTACTTTGAACCTAGTTCGTTAGCTTTAactagctatgacaatcggtttgtattgcttGTACTCTATGGGTTGGGGTTATGGGTCATTGTTTAGCTACCTACATGTTTAAACAAGACTCCACTTCGGCAGATGATTACATGACTAATCAAGTTAGTCAGGTGTGTTTGGCGGTGATTACGGCTatctattgtataataatgctaagatatttgtatctggaatttgtctttcagcatctgTAGAACACGCCAGACTCTCttccaccagtcatacaaggagaatggtctaatgcctcaTCAAAAAGAGAGCTGGTCCAAGCAAGCGCAGGTTACACCTGAAGCATGAGGACTTGCAGCGAGTTGTGAACAACAACTATGCCGAGGATAATGCAATAGTATTGCCACGATGCCACCCAGGACACAAACACTTTGGTGGAAAGCTGCTGCCATCCCATGTGACAGAAGCAGCAGTGTGGTGTCTCTACAAGGAATCGATGACAACACTTGaGGTACGTGTATTCGGGCTTTCTTCCTTCAGGAATCTGTGGAGAGATTGCTGGTGTggtgaaggacagcactgtgacGGGACAACATCCCACTGTTGGTTGGACTGGAGctttgatgctctggagcctggtgttgttgtcGCCAAAGGAGCAGCGACCCAgtcgggaccaggtttcagctgctgcgcaaTGCTGATGTCCTTTctcccatagatggtctgcctgtacaagcaccacctggacaCAACTAGACAAAGATATATTTTTGAGAAGATTAGGGAATTTTGCGACAAGGAGGCCATGGACATCAAATGTCCTGCACCAAAGtaaagggcaggacagaaacaggctctccaAATATAGATGCCCTTGTTCATGCGTGGTGCTGATGGACCAGTTCATCACTGGAGGCCGAGTTCCCATTCATCCGGACTCTCTCTAGTAGCAGCACATTCACATCACTCTCCCCctaacacacaaacacgcatacCATACGTTGCTGCTACATTTTGTTTTTATCAcgctgctcagccactttaccccttATTGTATGCATATAACTTCATTGTCTATCAAAAGTATCACTGATATCGTTATTGACATTGTtcgtgtacatactgtatattttgttCTTTCTCTTACTGGCACTTTGacacttttgtttatttattgtttatatTGACACTTtctatttttgatattgctactatgcaagtaaccatttcactgtatcATGTACACCTTCTGTACACTTAACAAGATGTGACTGGCATTTATAGCATTTCATTCACaggacccatcaatttagacattTGTCTGCGGTAAGCAtcatctaatatttataaaatatattttctggaCACCTTTTTTTTTATATTGCTACTTTACAAATATGCatgtaaccatttcactgtaccgtttacaccttctgtatgtgacaaataaatgttgattttgtttga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1218724 lncRNA downstream 28420 39944218 ~ 39944622 (-) True G1070100
TU1218538 lncRNA downstream 236218 39727777 ~ 39736824 (-) True ncam1a
TU1218573 lncRNA downstream 256503 39716287 ~ 39716539 (-) True G1069955
TU1218268 lncRNA downstream 385582 39586540 ~ 39587460 (-) True G1069693
TU1218262 lncRNA downstream 407569 39565248 ~ 39565473 (-) True G1069688
TU1218847 lncRNA upstream 75091 40054622 ~ 40055113 (-) True G1070221
TU1218910 lncRNA upstream 163000 40142531 ~ 40142744 (-) True G1070284
TU1218923 lncRNA upstream 172653 40152184 ~ 40152501 (-) True G1070297
TU1218930 lncRNA upstream 176267 40155798 ~ 40156116 (-) True G1070304
TU1218934 lncRNA upstream 178063 40157594 ~ 40157838 (-) True G1070308
XM_036937570.1 mRNA downstream 39509 39727774 ~ 39933533 (-) False ncam1a
XM_036937566.1 mRNA downstream 282710 39568361 ~ 39690332 (-) False LOC110537608
XM_036937568.1 mRNA downstream 282710 39573288 ~ 39690332 (-) True LOC110537608
XM_036937567.1 mRNA downstream 283714 39573288 ~ 39689328 (-) False LOC110537608
XM_036937564.1 mRNA downstream 427009 39518597 ~ 39546033 (-) False LOC110537607
XM_036937596.1 mRNA upstream 1113651 41093182 ~ 41098902 (-) False sc5d
XM_021623781.2 mRNA upstream 1113651 41093182 ~ 41101786 (-) False sc5d
XM_021623779.2 mRNA upstream 1113651 41093182 ~ 41101891 (-) False sc5d
XM_021623780.2 mRNA upstream 1113651 41093182 ~ 41101891 (-) True sc5d
XR_005035323.1 mRNA upstream 1115051 41094582 ~ 41094719 (-) True LOC118937914
TU1218083 other downstream 635068 39336104 ~ 39337974 (-) True fkbp6
TU1217986 other downstream 864080 39108300 ~ 39108962 (-) True G1069456
TU1217947 other downstream 900570 39041520 ~ 39072472 (-) True LOC110537579
TU1216260 other downstream 2266671 37672182 ~ 37706371 (-) True LOC110539142
TU1216105 other downstream 2305788 37614168 ~ 37667254 (-) True LOC110537546
TU1220392 other upstream 1059335 41038866 ~ 41039931 (-) True G1071725
TU1221758 other upstream 2066332 42045863 ~ 42062632 (-) True G1073009
TU1223569 other upstream 2724472 42704003 ~ 42713923 (-) True G1074731
TU1224206 other upstream 3584254 43563785 ~ 43564240 (-) True G1075335
TU1224273 other upstream 3681028 43660559 ~ 43660837 (-) True G1075399

Expression Profile