RNA id: TCONS_00040342


Basic Information

Item Value
RNA id TCONS_00040342
length 2138
RNA type mRNA
GC content 0.37
exon number 8
gene id XLOC_020326
representative True

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 17192767 ~ 17202113 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGTGGGACGGGGAAAAGATGGCGGCCGCCATGGTGCAAATGTCGTGTTTGTACCGCGGGATGTTGGCGGTCAGAAACCACGGAATCCGCCCGCTGATCCCCGGACTTGTGCCGTCTCACTTCAGGGCCTTCTCGATGAAGAAAGAGCCCGAGCTGGAGGAAAATCCATATTACAGCAAATACGAGGAGAAGATCAGGAAACTGCGGAGCTCAAAACCTCAAGAATATGAATCCCGGCTGGAGAAGCGAACTGAGTTGAAGACGGAGCCACTCGGGCGCTCCAGACAAGCAGAGTTTGTCAAATACATGGAGAAAGAGTTGGACAAACGTGGTAAAGATGGTGATGGAGGATTCACTAAAGACAAAACATTAGGCTCTATCCTCAACCTTGAAATGGTTCAGGAGAAATCTGGAGCTGAAATTACAGAGCTTTGGATGCAGTACTTCTCTAAGAAAGACACGATCAGCGCTGTCATACCAAGTTCAACATTTGACGTTATTTTTGGTCGCGCAAAATCATGTCCAACGTTTCTGTACGCTCTACCCCAGAATGAGGGTTATGAGTTTTTTGTGGGCCAGTGGGCTGGTAATGAGCTGCACTTCACATCTTTAATCAACGTTCAGACTATGGGAGAAAATGCGCCCAGCCAGCTTATTTTGTACCACTACACAGACCTGCAGAAGGACAAAGATATTGTTTTGATGACGGCTGAGATGGACAGCAAATTTGTGGTAAGTTGGATTAATTTACACAatataaataagcaaaaacaaaGCAATGGATTCAATGTTATTGTAAACCTCTTTCAGACGGTCCACCAGGCGCAGTGTTTGGCCAATCAGGTGCAGCTGTTTTATGGATCGCAGAGGCTTGAGACTTTCCGATTGGTCGAGACCTTTAACCACAAACCGGAGGAGTTTAAACACATGGCTGTGATCGCAGAACTAGAACAGAGTGGAATTGGACCAGCGGTCACTACGAAGTAATCATCAAAAGAcattaattataaattttttcTTATGTGGAACATCACCATTGCACAGAAACACAGTCTGGTGTGAGTCTCTGCTgccgcatataaaaacaatacaatatgtgTTTCAGTAGATATGCGTTATACGGACTCGTAGCATTCGCGCAACATGATTATCTGCTACTGTGTATGCAGATTCTGTGTATTATTACTCATTTGACTCCTGATGAAtatcactatttaaaaaaaattgaaaaacctTAAAAATGACATTGCAATACATTGTTGCCTGCAGTTCTACAAATGGCCACTGGTGTCGCTATTAACAAGTGTCTGAATTCTAAATGTAGTTCtgctaaaaacaatataataaataaaaaatgtaattgaaataattacaaattttattaaagaaataatgCACAGAAATGTGCTaactgtattaattttatttattgtgtgtattGTATTCGTTTGCATACTATTTTACGTTTTAATAGGACAAGCCCTATTATACTGGTTAAATGGTATTATTAATCTTTCTGCGTTTAGATTTTTCTGCATTGCTTAAACCAAGAATATTACACTTTACAACTATTTAATTTTTGGCAAATTAGTgcctaatttgttttattttattttttaaagattcatttttggcattttttgcctTTATTGTGACAGGACAGTAGTTAGACTGGGTGTGAGGTTCAGAGAGAGGAGATTCGAACTCAGGACATCTGAAGTGCAGCTGCCCTAAAGGCTATTTCAATGGCTAATTTGTAATACATACACTTTAATTTGTATGTTTACATACATTTTCGCACTGATGGTTAGGCTGAGGGGTTGGGTCTTTCATTTTTAagtttaactaattatttaaaaataaaaataaaaatatttcatttaaatggcTCCCATTCAAGTTTTTGGGTTGGGTGAAGGGCATCATCACTTTATAAGATCTAtcataagtattttacatttaggcTAATTTAGCCAAAACGTACAATACTAACTATAACAACTATTTATGCAAATTTAATTTATAgctgaattattaattattagttgAATATCATATAATAAAGCTATTTGACAAACAATATGCGTAGTGTCAGGAAAGGTTTgactttgtgctttatttttatttgttacgAATAT

Function

GO:

id name namespace
GO:0065003 protein-containing complex assembly biological_process
GO:0033615 mitochondrial proton-transporting ATP synthase complex assembly biological_process
GO:0005739 mitochondrion cellular_component
GO:0003674 molecular_function molecular_function

KEGG:

id description
ko03029 Mitochondrial biogenesis

ZFIN:

id description
ZDB-GENE-030219-10 Predicted to be involved in mitochondrial proton-transporting ATP synthase complex assembly. Predicted to act upstream of or within protein-containing complex assembly. Predicted to be active in mitochondrion. Is expressed in immature eye and optic tectum. Orthologous to human ATPAF1 (ATP synthase mitochondrial F1 complex assembly factor 1).

Ensembl:

ensembl_id ENSDART00000183006

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00042107 lncRNA upstream 381410 16810284 ~ 16811361 (+) True XLOC_020324
TCONS_00042106 lncRNA upstream 1255503 15788139 ~ 15937268 (+) True XLOC_020308
TCONS_00040314 lncRNA upstream 1381649 15787981 ~ 15811122 (+) False XLOC_020308
TCONS_00042105 lncRNA upstream 1832587 15358159 ~ 15360184 (+) True XLOC_020300
TCONS_00041893 lncRNA upstream 2091345 15099470 ~ 15101426 (+) True XLOC_020293
TCONS_00040363 lncRNA downstream 301395 17503508 ~ 17506038 (+) True XLOC_020334
TCONS_00040366 lncRNA downstream 328911 17531024 ~ 17534007 (+) False XLOC_020336
TCONS_00040370 lncRNA downstream 337050 17539163 ~ 17541057 (+) True XLOC_020336
TCONS_00040373 lncRNA downstream 405640 17607753 ~ 17611582 (+) True XLOC_020337
TCONS_00040376 lncRNA downstream 582529 17784642 ~ 17803402 (+) True XLOC_020338
TCONS_00040338 mRNA upstream 1246 17118225 ~ 17191525 (+) False XLOC_020325
TCONS_00040340 mRNA upstream 1371 17120473 ~ 17191400 (+) False XLOC_020325
TCONS_00040339 mRNA upstream 1371 17120473 ~ 17191400 (+) True XLOC_020325
TCONS_00040337 mRNA upstream 417254 16759015 ~ 16775517 (+) True XLOC_020323
TCONS_00040336 mRNA upstream 417258 16759010 ~ 16775513 (+) False XLOC_020323
TCONS_00040343 mRNA downstream 1639 17203752 ~ 17208849 (+) False XLOC_020327
TCONS_00040344 mRNA downstream 3495 17205608 ~ 17213264 (+) True XLOC_020327
TCONS_00040346 mRNA downstream 12276 17214389 ~ 17236576 (+) False XLOC_020328
TCONS_00040345 mRNA downstream 12276 17214389 ~ 17236576 (+) False XLOC_020328
TCONS_00040347 mRNA downstream 12290 17214403 ~ 17236027 (+) False XLOC_020328
TCONS_00040335 other upstream 553346 16639310 ~ 16639425 (+) True XLOC_020322
TCONS_00040326 other upstream 889443 16302317 ~ 16303328 (+) True XLOC_020314
TCONS_00040324 other upstream 915146 16277498 ~ 16277625 (+) True XLOC_020313
TCONS_00040312 other upstream 1457928 15732967 ~ 15734843 (+) True XLOC_020306
TCONS_00040293 other upstream 2698400 14489758 ~ 14494371 (+) True XLOC_020288
TCONS_00040360 other downstream 241232 17443345 ~ 17450266 (+) True XLOC_020332
TCONS_00040371 other downstream 404475 17606588 ~ 17607337 (+) False XLOC_020337
TCONS_00040377 other downstream 622346 17824459 ~ 17824573 (+) True XLOC_020339
TCONS_00040381 other downstream 964486 18166599 ~ 18175378 (+) False XLOC_020342
TCONS_00040385 other downstream 1045179 18247292 ~ 18280440 (+) False XLOC_020344

Expression Profile

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