RNA id: XM_021623779.2


Basic Information

Item Value
RNA id XM_021623779.2
length 1917
RNA type mRNA
GC content 0.46
exon number 5
gene id sc5d
representative False

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 41093182 ~ 41101891 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCGTGACAAGGAAGTATCTTTCCATTGGATATGTGTGCAATTACGTCGTTGTTTCTTTAAACAGGGAGTTGCAGATTGGTTACCCGAATACCTATAGTTTGATGACATTGTTCGCCTTATCAAGTGGCTTGGTAAAGTGGACAACTGCGTCAGATTCAGACATGGATCTTGTGCTGAATGTCGCCGACCACTATGTCCTCACCCCCTACGTGTACCCGTCGTCGTGGCCTGAAGACGGGGCGCTGCGCCAGATCATCAGCCTGTTGGTAGTCACCAACCTGGGAGCCGCAGTCCTCTACCTGGGCCTGGGGTGGCTGAGCTACCACTTCATCTTTGACCACAACCTCATGAAACATCCACAGTTTCTAAAGATCATTGTTGGTCCTCAGAACCAGGTGCGGCGGGAGATCAAATACGCCATGACCTCGCTACCCATAATCAGTATACCCACTGTGGCGTTATTTTTCCTTGAGGTCAGAGGATACAGCAAGCTCTATGACGACGTCGAAGAGTCTCCCATGGGCTGGCCCTTTGTGCTTCTCAGCATGATTTCCTTCTTGTTATTCACGGACGGGTGCATTTATTGGATTCATCGGTTTCTTCACCACAAGAGTATTTACAAGCACTTCCACAAGCCACACCATGTGTGGAAGATCCCCACCCCGTTTGCCAGCCACGCCTTCCACCCGCTGGATGGCTTCCTGCAGGGTCTGCCCTACCACATCTaccccttcctcttccctctgcaCAAGGTGCTCTACCTGGCCCTCTACATCTTCGTCAATATCTGGACTGTGTCTATCCATGACGGCGACTACCGCGTGCCCGGACCACTGCAGGAAGTGGTCAACGGGGCGGCCCACCACACGGACCACCACCTCTTCTTCGACGTCAACTATGGCCAGTACTTCACCCTGTGGGACCGCATTGGCGGGTCTTACCGCAACCCCTCAGTACTCGAAGGGAAGGGCCCCCTCGACTGCATTCGTAGACTGACTGCCGAGGGGAAGATGAGCGCTAATGGGGCTAATGCCAATGGGCACACGAATGGGCATGCTAATGTAAGCGGTACAAAGAGTAAGGAGGAGTAGTTGGTACATGTGGTGTAGTGTCATGATGAATGAGTTCTTAGTTGATAAAGCTAAGCTAGGTGTCACTGATAAGGATTAGCTCACATACTGCTTCACACATGGATTGTTTTCATTCATTATCCCATTATAAATAATCAAGCTACAGTTGCTTATCTTTCTTAAACTGTCCCTTTATTAATTTTCCTCATTGTTTCAATGCTAGGGAAAGGGAGGAGGCAAGAATGTCTTGACATTTCACTGAAAAACACTGATATACTGAACATGTGGGTGATATAATTGTTTGGAACTTAATTTCAGTTTCTGCATTTGCCAAACAAATACTTAATGAGAATTTAGACAAAAGCACCAAGCTATTCTCATAGTCATAGGCTATAGAAACCTAGCAGGCCTCTCACCATTTCCTGGATTGTCATCATTGACTTGAGAAATAATTGCTTATTTTAATGAAGTTCATTGAGTGCATGCTGATTGATTGTGCCTGTTTGGAGGTGTTGTGTGTTGTATGGATTTTGTTTGATATCTGAGGGGAGGTGACAATGAAATAGGATGTCTAGTGCTGAGTAATGCAAGAAAATGAAAATGCATGACGTTCCTACAACCCCTATGTACTATAAGATATTAAGGTTGTAGTGGTTAATGGCAGGAACTGGGATTCTACACACCATGACTCGTCAGATTTGGTCATGCTCATATCCAGTAGTTAACCCtctgggacttttctccaacaagATAAAAGTAAAACGTCTATGACGAATGGAAGTGTGTTTACCGGAATGTTTTGCATTTTAAAGCAGACATATCTGGggaatgaaataaaataaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1220440 lncRNA downstream 3710 41089273 ~ 41089472 (-) True G1071772
TU1220438 lncRNA downstream 6154 41086519 ~ 41087028 (-) True G1071770
TU1220435 lncRNA downstream 9580 41083272 ~ 41083602 (-) True G1071767
TU1220389 lncRNA downstream 57043 41035918 ~ 41036139 (-) True G1071722
TU1220386 lncRNA downstream 61435 41031540 ~ 41031747 (-) True G1071719
TU1220449 lncRNA upstream 6147 41108038 ~ 41108329 (-) True G1071781
TU1220451 lncRNA upstream 7898 41109789 ~ 41110015 (-) True G1071783
TU1220453 lncRNA upstream 11837 41113728 ~ 41114069 (-) True G1071785
TU1220454 lncRNA upstream 13919 41115810 ~ 41116146 (-) True G1071786
TU1220455 lncRNA upstream 15006 41116897 ~ 41117186 (-) True G1071787
XM_036937580.1 mRNA downstream 1049693 39727774 ~ 40043489 (-) False ncam1a
XM_036937569.1 mRNA downstream 1049694 39727774 ~ 40043488 (-) False ncam1a
XM_036937573.1 mRNA downstream 1049694 39727774 ~ 40043488 (-) False ncam1a
XM_036937574.1 mRNA downstream 1049695 39727774 ~ 40043487 (-) False ncam1a
XM_021623787.2 mRNA upstream 28265 41130156 ~ 41183959 (-) False arhgap32b
XM_021623788.2 mRNA upstream 28265 41130156 ~ 41183959 (-) False arhgap32b
XM_021623789.2 mRNA upstream 28265 41130156 ~ 41183959 (-) False arhgap32b
XM_021623786.2 mRNA upstream 28265 41130156 ~ 41210164 (-) False arhgap32b
XM_021623782.2 mRNA upstream 28265 41130156 ~ 41364010 (-) False arhgap32b
TU1220392 other downstream 53251 41038866 ~ 41039931 (-) True G1071725
TU1218083 other downstream 1755208 39336104 ~ 39337974 (-) True fkbp6
TU1217986 other downstream 1984220 39108300 ~ 39108962 (-) True G1069456
TU1217947 other downstream 2020710 39041520 ~ 39072472 (-) True LOC110537579
TU1216260 other downstream 3386811 37672182 ~ 37706371 (-) True LOC110539142
TU1221758 other upstream 943972 42045863 ~ 42062632 (-) True G1073009
TU1223569 other upstream 1602112 42704003 ~ 42713923 (-) True G1074731
TU1224206 other upstream 2461894 43563785 ~ 43564240 (-) True G1075335
TU1224273 other upstream 2558668 43660559 ~ 43660837 (-) True G1075399
TU1224387 other upstream 2672173 43774064 ~ 43774425 (-) True G1075509

Expression Profile