RNA id: XM_036937609.1


Basic Information

Item Value
RNA id XM_036937609.1
length 2339
RNA type mRNA
GC content 0.46
exon number 9
gene id LOC110538899
representative False

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 42957437 ~ 43517782 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCCAAGTGCTGAAGGGATGGTGGAGATCACTAAAACTATATTGTATAGAGTCAATCACAAGAGATAATCAATcatgtgtgttgttgtttgtgctcTCTTCTTCGGATTTGGCACCAGTGGTGTGTTTAAGTTTTATCACGTCATCTCAACCGAAATACCTGTTTTAGGTTTGCTCTGCGTGCTGTCCACGACCGCAACCGTTAATTTTCCATGAACGTGAAATTGCGCAATGTCATCATCAATACAAGTATTTGGACCATTCGGAAAGGAAAAGTAAACATTTCCATGCGAACTGCGGAACAGAATGGAACAGGCTGACAATATATTTTGGAGTGCGCAGTAAGGATAGCTACCCTCTTGCATAGATTATGCTGTACCTGGAAAACATATTTGGATTAACAGATGAACAGTAGGCTATTAACTAACCCGCGCTCGCTCCACAGGACCGCTATACGCATTTGCCTTTTAAAACAACGGAAGCATTGTCTCGACAAGCAGTGGGATTTATAAACCGAAGATGGGTATTTGTGGATACTTTACCGTGTCTTGGAAGTGCCTGGTGGTTCTGTCTTTCAGACTGCTGTTTCTTGTCCCCGCAGGTTTGCCTGTCCACAGTCAAGGGGAATCCCAAACCGATAGTAAAGTGATGGACAATATTACCGTCAGGCAAGGCGAAAACGTCTTTCTCAGGTGCGCACAAGGGGACATTGTCACACACACGGCCTGGCTCAACCGGTCGAGTATACTGTACGCCGGCGAGGATAAGTGGTCTGTGGATCCCAGGGTGAGCCTGGTTACACTCAATCAGGAGGAGTTCACCATCAAGATTGAGGATGTGGACATGACAGATGAAGGCCCATACATCTGCGCGGTGCAGACGAGCAGCAGACCGAGGACGACGTCAGTGCACATCCTCGTCCAAGTGCCCCCCACAATCATCAACTTGTCGAAGGACCTCGTGGTCAACGAAGGCTCGAACGTCACTCTGATGTGCCAAGCCAGTGGCAAACCAGAACCCTCGCTCACCTGGaaacttctctctccctcagTTGACTTGGTATCGGAGGACGAATACCTGGACATCCCcagtatctccagacagagagcGGGGACATACGAATGCACCGCCATCAACGACATCGCCACAGACGTCCAGACCGTTGAGATCACAGTCAACTATGCCCCCAGTGTGTCAGAGGGCAGAGACGTTGGCGTGACCCTTGGCCAGAGAGGGGTGCTGGAGTGTGAAGTGGATGCGGTGCCCAAGGCGGACTTTGAGTGGTATCGAGACGACAGAAGGATCTTCAACGGTTTAGATGGCATGGAGATCGAGGACGCCGGGCAGCTCTCCAAGCTGACCTTCTTAAACATCTCAGAGGCAGACTACGGCAACTACACGTGCATCGCCATCAACAAACTCGGCAGCTCCAACGCAAGCTTTGTCTTGTATGAGGTTATTGAGCCTACTAGCTCAACACTAGTGCAAGAGGGGTCAACCAATGTGTTATTGTTGAGTTCATCTGTGTTAGAAAAGACACCCTCTGAAACCTTTGCATTACCGGCAGGACCCGGAGCAGTGCAGGATGGGAACAGCGGCTCGATGgggacacacgtacacacctacacctgTCTACTTCTGGTCATCCTCCTTCCGTTTCTGCTCAAGTTTTGATGCAGTGGGCTTTCTGGCATCCGAGGGCAAGGTTGCATGTTTTGTGTGTTTTCTTTCACCTGGAACCACAAACTTGATGCACAGAGTGCATGGGCTACCCTACTACATCATGTCGAACCGCTAAAAAGTATTATGTAACATATACTTTTTAAAATTCATTTTAGTTGAGTTTTAAGGACATAACAAGTTGCTTTTTTTTGTTTAGTTTCGCCTCCCATTATGATATGATTCTTAAATGTTTATTCACGTGGGTCTCAAAAATAGGCCTGTCCGATGTGGTTTGTCTGTTATTTACATTTAATTTATCTCAATTTCCCCCGACTGACAGTCATCTTAGCCCCGAGAGTCTTAGCCCTAAGAGTTAAGTGTATGAGGTGAACTAAACAAACACCTCAAACACAGGCAAGGACCAGAAGGACTGAAATCCCTCTAGGGCCTAAAAGCCTGTAATCATGTTTGTTTCTGCTGTAATTATTTTGGATTCTGATACATTGACAAACCACAACCGGTTAAGAAGAAATGGAATTTTGACAAATGTTCTTCTTCCTCTCATCATTGTAAATTGTGATATTTTCAGTTGTTTGTGCTAtgctattttttgtttgtttttaacacATATTGAAAAGGGGTAAATAAAACATAAAAGTTGTATACATTTGTGCAAAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1223766 lncRNA downstream 22524 42927955 ~ 42934913 (-) False G1074918
TU1223765 lncRNA downstream 22524 42928211 ~ 42934913 (-) True G1074918
TU1223755 lncRNA downstream 39368 42913077 ~ 42918069 (-) True G1074908
TU1223362 lncRNA downstream 525887 42418795 ~ 42431550 (-) True G1074536
TU1222023 lncRNA downstream 550042 42407149 ~ 42407395 (-) True G1073256
TU1224124 lncRNA upstream 282757 43451348 ~ 43452333 (-) True G1075256
TU1224286 lncRNA upstream 505504 43674095 ~ 43674408 (-) True G1075412
TU1224354 lncRNA upstream 551710 43720301 ~ 43720848 (-) True G1075479
TU1224375 lncRNA upstream 589838 43758429 ~ 43758850 (-) True LOC110537637
TU1224384 lncRNA upstream 601590 43770181 ~ 43770510 (-) True G1075506
XM_021623810.2 mRNA downstream 691650 42258650 ~ 42265787 (-) True tmem218
XM_021623808.2 mRNA downstream 703658 42225171 ~ 42253779 (-) True LOC110537624
XM_036937606.1 mRNA downstream 706192 42225171 ~ 42251245 (-) False LOC110537624
XM_021623800.2 mRNA downstream 1066074 41884739 ~ 41891363 (-) False LOC110537621
XR_005035296.1 mRNA upstream 377442 43546033 ~ 43575350 (-) True LOC118937884
XM_036937618.1 mRNA upstream 480505 43649096 ~ 43686262 (-) True LOC118937674
NM_001124232.1 mRNA upstream 556877 43725468 ~ 43731026 (-) True hspa8
XR_005035311.1 mRNA upstream 557848 43726439 ~ 43726532 (-) True LOC118937902
XR_005035312.1 mRNA upstream 558698 43727289 ~ 43727382 (-) True LOC118937903
TU1223569 other downstream 243514 42704003 ~ 42713923 (-) True G1074731
TU1221758 other downstream 894805 42045863 ~ 42062632 (-) True G1073009
TU1220392 other downstream 1917506 41038866 ~ 41039931 (-) True G1071725
TU1218083 other downstream 3619463 39336104 ~ 39337974 (-) True fkbp6
TU1217986 other downstream 3848475 39108300 ~ 39108962 (-) True G1069456
TU1224206 other upstream 395194 43563785 ~ 43564240 (-) True G1075335
TU1224273 other upstream 491968 43660559 ~ 43660837 (-) True G1075399
TU1224387 other upstream 605473 43774064 ~ 43774425 (-) True G1075509
TU1225419 other upstream 1286057 44454648 ~ 44455270 (-) True G1076460
TU1225480 other upstream 1377928 44546519 ~ 44600888 (-) False LOC110537661

Expression Profile