RNA id: XM_021623852.2


Basic Information

Item Value
RNA id XM_021623852.2
length 2066
RNA type mRNA
GC content 0.53
exon number 14
gene id LOC110537649
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 44126926 ~ 44135806 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AATATCGTGTAGTGTACTCCCGGTGACAaaacactccagtacagtaggtggcggcacaCACTTATAATGTTTGCCATAATATTctagaagaagaagacaacatgGCTGCTGCAGCAGGTCGCTATTACAACGAGGGTGGCAGAGCAACGAAAAGACAGAAAACCGAAGACGGGATGACGACGGAGGGCTATGATGACCCCCATAAAACACTCCCTTCCCCAGTGGTCCACATCAGGGGCCTTGTCGATGGCATCATGGAGGCagatctagtggaagccctgcAGGAGTTTGGGACCATAAGTTATGTGGTCATGATGCCCAAGAAGCGCCAGGCCCTGGTGGAGTACGAGGACATGAATGGATCCTGCAATGCTGTGACCTATGCAGCCGAGAACCAGGTCTACATTGCCGGGCACCCCGCCTTCATCAACTACTCCACCAGCCAGAAGATCTCCCGGCCCGGAGACCCAGACGACTCGCGCAGCGTCAATAACGTGCTGCTGCTCACCATCATGAACCCTATCTACCCCATCACCTCGGATGTGCTGTACACAGTCTGTAACAACTGTGGGCCCGTCCAAAGGATTGTCATCTTCAGGAAGAATGGCGTTCAGGCCATGGTGGAATTTGATGCTGTACAAAGTGCCCAGAGGGCGAAAGCCTCTCTAAATGGGGCAGACATCTACTCTGGCTGCTGCACACTGAAGATTGAGTATGCCAAGCCAACCCGCCTCAACGTGTTCAAAAATGACCAGGACACCTGGGACTACACAAACCCCAACCCGAGTGGCCACGATGCTGACGCTGAAGGCAATTGGAACAATTCACAAGATCCCAATGCCAACCCCAACAAGCGTGCGAGGCCGCCAGCTCTACTAGGAGACCACCCTCCAGAGTATGGCGGGCCGACTGGTGCTTATCACGGCTACCATGATGAAAGTGGCTACGGGCCCCCTCCTCCTCACTATGAGGGCGGGCGCCGCATGGGGCCTCCGATGGGAGGGCGTGGCCGCGGACGTGGTGGAAGCTACGGGGGACCTGGGTACGGACATGGCCCACCTCCCCCCGGTGACTACACCGCCCACGCTGACTCCCCTGTTGTCATGGTGTACGGCCTGGAGCCCGCGAAGATCAATGCCGACAAGGTCTTCAACGTCTTCTGTCTCTACGGCAATGTGGAGCGGGTGAAGTTCATGAAGAGTAAGCCGGGGGCAGCCATGGTGGAGATGGGCGACTGCTACGCTGTGGACCGTGCCATCAGCCACCTCAACAACAACTTCCTGTTTGGACAGAAGCTCAACGTCTGTGTGTCCAAGCAGCAGGCCATCATGCCTGGTCAGTCCTATGAACTGGAGGACGGCTCCAGCAGCTTTAAGGACTTCCACGGCTCCCGCAACAACCGCTTCACCTCCCCGGAGCAGGCGGCAAAGAACCGCATCCAGCATCCCAGCAATGTCTTGCACTTCTTCAACGGGCAGCCCGACATCTCCGTGGAGGTCTTCAATGGGGTCTGTGAGGAACTTGGTGTGAAGAACCCATCCAGCATCAAACTCTTCACTGGAAAGAGTGAGAGGAGCTCATCCGGGCTGCTGGAGTGGGAGTCTATAAACGATTCCATGGAGGCTCTGGCCATGATGAACCACTACCAGATGAAGAACCCCAGTAAGTACTCCGACTGCGATAACAACACCACCGCTAATGATACCAACGGTGGTCCGTACCCTTACACACTGAAGCTGTGTTTCTCAACTGCGCAGCATGCCAACTAGAAAGAACTCTGACCCCCCCCCACAAATCTGTAATGCTCTGTGTCCATGCATAGTGTATTTTGCATTCACATCTTCACTACAAGTCCCCTGTATGAATCAGAAACAAAATGTATGAGACCGACAAGTGTTTTCCTTTAACTTAAGTGCTAATATTGCGGACAGGATTTTGTACCAGTGAGTGTATTGTTTGAtgtagaattattatttttttgactTATTGTTGAATTTGATTTGTTCTGTACATTAGACCTTGGAAAAAAGAACCGCTCCTATTCTGAAATAAAAATTCCATGTTAA

Function

GO: NA

KEGG:

id description
K13159 HNRNPL; heterogeneous nuclear ribonucleoprotein L

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1224564 lncRNA downstream 63012 44063514 ~ 44063953 (-) True G1075664
TU1224493 lncRNA downstream 108100 43983900 ~ 44018865 (-) True G1075600
TU1224430 lncRNA downstream 259941 43866391 ~ 43867024 (-) True G1075539
TU1224429 lncRNA downstream 261895 43864869 ~ 43865070 (-) True G1075538
TU1224427 lncRNA downstream 287792 43838971 ~ 43839173 (-) True G1075536
TU1224303 lncRNA upstream 2159 44137965 ~ 44144948 (-) True G1075429
TU1224595 lncRNA upstream 21367 44157173 ~ 44157466 (-) True G1075693
TU1224613 lncRNA upstream 54871 44190677 ~ 44190878 (-) True G1075711
TU1224695 lncRNA upstream 168071 44303877 ~ 44304150 (-) True G1075790
TU1224709 lncRNA upstream 175589 44311395 ~ 44311923 (-) True G1075804
XM_021623847.2 mRNA downstream 17049 44106634 ~ 44109916 (-) True LOC110537647
XM_021623835.2 mRNA downstream 181111 43920894 ~ 43945854 (-) False LOC110537642
XR_005034986.1 mRNA upstream 25120 44160926 ~ 44169514 (-) False LOC110537650
XM_021623856.2 mRNA upstream 25121 44160927 ~ 44169511 (-) False LOC110537650
XM_021623855.2 mRNA upstream 25121 44160927 ~ 44169528 (-) True LOC110537650
XR_005034987.1 mRNA upstream 66375 44202181 ~ 44208228 (-) True LOC118937676
XM_021623858.2 mRNA upstream 109801 44245607 ~ 44295011 (-) False LOC110537653
TU1224387 other downstream 352540 43774064 ~ 43774425 (-) True G1075509
TU1224273 other downstream 466128 43660559 ~ 43660837 (-) True G1075399
TU1224206 other downstream 562725 43563785 ~ 43564240 (-) True G1075335
TU1223569 other downstream 1413042 42704003 ~ 42713923 (-) True G1074731
TU1221758 other downstream 2064333 42045863 ~ 42062632 (-) True G1073009
TU1225419 other upstream 318842 44454648 ~ 44455270 (-) True G1076460
TU1225480 other upstream 410713 44546519 ~ 44600888 (-) False LOC110537661
TU1225479 other upstream 444952 44580758 ~ 44600888 (-) True LOC110537661
TU1225874 other upstream 998046 45133852 ~ 45153337 (-) True gria4b
TU1227478 other upstream 2066798 46202604 ~ 46206088 (-) True G1078323

Expression Profile