RNA id: XR_005034986.1


Basic Information

Item Value
RNA id XR_005034986.1
length 1540
RNA type mRNA
GC content 0.52
exon number 9
gene id LOC110537650
representative False

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 44160926 ~ 44169528 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAATCCCTCCTCCATGAAACCGAAAGAGACTCGCTCTCTGGTTGGCGGTACTTCCTTCCCTGGGTTATATGTTAAACGTGCTGTTGCCTTGTGCGAGCAGCTAGCTAGGTCAATACGGGAAAGGGGGGGAGTGTGGAAAAGTATTTGCAGCTGACTGAGGCCAACTGGGAAACGGTGTTCATTCACTAGCTGAACGGGGGAGGcgggtagctaacgttagcatagcTAGCTGCATCAATTTCAGATTTTAAGATGTCCCACTCGTCATCACGTGGCTCCTCGCGCAACACTGACTGCAAGGTCTATGTGGGTGACTTAGGCAACGGGGCTGCTAAGGGGGAGTTGGAGCGGGCGTTCAGCTACTATGGACCTCTGCGCAGCGTCTGGGTGGCCAGGAACCCTCCTGGCTTTGCCTTCGTCGAGTACGAAGATCCCAGAGATGCTGAGGATGCGACAAAGGGCATGGATGGCAAAGTGCTCTGTGGTTCTCGCATAAGAGTGGAGTTGTCAACTGGCATGTCTCGCAAGTCACGCTACGGCCGTCCCAGCCGTCGGCACTTCGACCCCAACGACCGCTGCTACCAATGTGGCGAGAGTGGCCATTATGCATATGACTGCTCTCGCTTTAGCAAGAGGGGAGGAGGCCGTCGCCGCAGCAGGTCCCGCTCACGATCTCGCTCAAGGTCCAGGGGAAGGCGTTACCGTTCACGCAGCCGAAGCAACGACCGTGACCGGCGTAATAGATCCCCATCATACTCAAAGCGCAGAAGCAGATCTGGGTCCCCCGCACGTTCCAAGTCCAGAAGTCCAGTGTGCAGATCCAGGACCCCAGTCCGTCGGTCCAGGACTCCAGTGCGCAGATCAGTAAGTCGCTCCCGTTCTCGCTCCCATTCCCGGTCAGTGTCCCACCCCAGGGCGCGGAGCGTCTCCAGATCTCGCTCCAGGTCCCGCTCGGCCACGACCAGGAAGAAGAGGTATTAAATTTGAGGATCTCCTCATACCCCTACACCAGGGTTTCCCAATCCCGGTCTTCGGGACCCCAAGCCGATCCAGGTCTCCCAGCCAGAGGAAAAGCCCCATACCCGATGCTGACTGACCATGGGGGTGAAACCGCTCCATGCCCTGCTGTTCCCCTATCCCCATTTGCCTCAGGGCTTGAAGCCATTTAACCCCTTTGTCCATGTATTTTGATTTCTTTCTCCTGTCATTTAGTTTATTTATCCCTTGGTGTTCATCCTCTGGCTTTGGCATTATTATTTCATCTGTATGTACAACAAATTCCCGAACTGTACATTTCAATGGCTCTTTTTACAGTGGTGATGTTTTTAGCTTTCTGTGCATTTTGAATTTGTTAGCCTTTGGCCAGTGTTAATGGCAATTTTTTTTCCTTTTCTGACATATTTGGCAATATATCAGCTCCAGTCGAGTGCATTGAAGTGTACTCATAGCTGTACTAAAAGCAGAATGATTTAGggttttatttcattttcaatgtaAATGGCGGTATCTTTTTAATAAAATGAATCTTTACACTAGTAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1224595 lncRNA downstream 3460 44157173 ~ 44157466 (-) True G1075693
TU1224303 lncRNA downstream 15978 44137965 ~ 44144948 (-) True G1075429
TU1224564 lncRNA downstream 96973 44063514 ~ 44063953 (-) True G1075664
TU1224493 lncRNA downstream 142061 43983900 ~ 44018865 (-) True G1075600
TU1224430 lncRNA downstream 293902 43866391 ~ 43867024 (-) True G1075539
TU1224613 lncRNA upstream 21163 44190677 ~ 44190878 (-) True G1075711
TU1224695 lncRNA upstream 134363 44303877 ~ 44304150 (-) True G1075790
TU1224709 lncRNA upstream 141881 44311395 ~ 44311923 (-) True G1075804
TU1224730 lncRNA upstream 157076 44326590 ~ 44326906 (-) True G1075825
TU1224856 lncRNA upstream 240259 44409773 ~ 44410004 (-) True G1075939
XM_021623853.2 mRNA downstream 25120 44126926 ~ 44135806 (-) False LOC110537649
XM_021623854.2 mRNA downstream 25120 44126926 ~ 44135806 (-) False LOC110537649
XM_021623849.2 mRNA downstream 25120 44126965 ~ 44135806 (-) False LOC110537649
XM_021623852.2 mRNA downstream 25120 44126965 ~ 44135806 (-) True LOC110537649
XM_036937625.1 mRNA downstream 25344 44126965 ~ 44135582 (-) False LOC110537649
XR_005034987.1 mRNA upstream 32667 44202181 ~ 44208228 (-) True LOC118937676
XM_021623858.2 mRNA upstream 76093 44245607 ~ 44295011 (-) False LOC110537653
XM_021623861.2 mRNA upstream 76093 44245607 ~ 44295011 (-) True LOC110537653
XM_021623862.2 mRNA upstream 163362 44332876 ~ 44373197 (-) True LOC110537654
XM_021623864.2 mRNA upstream 208429 44377943 ~ 44388854 (-) True LOC110537655
TU1224387 other downstream 386501 43774064 ~ 43774425 (-) True G1075509
TU1224273 other downstream 500089 43660559 ~ 43660837 (-) True G1075399
TU1224206 other downstream 596686 43563785 ~ 43564240 (-) True G1075335
TU1223569 other downstream 1447003 42704003 ~ 42713923 (-) True G1074731
TU1221758 other downstream 2098294 42045863 ~ 42062632 (-) True G1073009
TU1225419 other upstream 285134 44454648 ~ 44455270 (-) True G1076460
TU1225480 other upstream 377005 44546519 ~ 44600888 (-) False LOC110537661
TU1225479 other upstream 411244 44580758 ~ 44600888 (-) True LOC110537661
TU1225874 other upstream 964338 45133852 ~ 45153337 (-) True gria4b
TU1227478 other upstream 2033090 46202604 ~ 46206088 (-) True G1078323

Expression Profile