RNA id: XM_021623883.2


Basic Information

Item Value
RNA id XM_021623883.2
length 8171
RNA type mRNA
GC content 0.46
exon number 13
gene id LOC110537669
representative False

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 44971998 ~ 45021139 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAGACATGTTCCGGGTAAAACGATTTGAACCTTTTGGCTTTCCATAGGGGAGAGCGAGATTGCAAGCGGTTCGGAGGGGGGTGCGTTGCTCAGGCAGGACCGAGGAGGAATCACAGCAGCCCCGGCTGGGACTGCCATACCTGACCCGCTGGATTCCCggaggaacagagagaacacGTCGCCCAAGGGAGAGGAGCTCTGTTCAGGCTGTAGGATGTTCTCGTCAGTGAAGGCCTTCGAGGGGCAGCAATACTCCACCCTGAAGAGGCAATGCCTTGCCAGTGGCCTTCTGTTTGAAGACCCACACTTCCCCGCCTTGGACGACACCCTCTTCTACCAGGGCAACAGGATTGGACGCGTGCACTGGAAAAGACCCCAGGAGCTCTCTGAGGACCCTCACCTGTTTGTGGATGGGATCAGTGCGCACGACTTGCACCAGGGCCAGCTGGGAAACTGCTGGTTTGTGGCAGCGTGCTCCAGCCTGGCCTCCAGAGAGTCCCTGTGGTCTAAAgtCATCCCAGACTGGAAAGAGCAGGAGTGGGACACGGAGACACCCGAGTCGTACGCCGGGATCTTCCACTTCCGCTTCTGGCGCTTCGGAGAGTGGGTGGATGTGGTGATCGACGACCGGCTTCCCACGGTGGACAACCAGCTGGTCTACTGCCACTCGGATGACAGCAACGAGTTCTGGAGCGCACTGGTGGAGAAGGCCTATGCCAAAGTGTACGGCTGCTACGAGGCCCTGGATGGCGGGAACACGGCGGATGCCCTGGTGGACTTCACAGGGGGTGTGTCGGAGCCCATGGACCTGCTGGAGGGCCAGATGGCCACTGACGAGTTGGCCCGCAACCAGCTGTTTGAGAGGGTGCTGAAGGTCCACAACCGGGACGGCCTCATCAGCTGCTCCATCCGGGCGACCACAGTGGAGGACATGGAGGCACGGCTAGACTGTGGCCTGGTCAAGGGCCACGCATACGCAGTGACGGACGTGAAGAAGGTGCGTCTGGGCCAGGGCCTGCTGGCATTCTTCAAGTCAGAGAAGCTCAATATGATCCGCATGAGGAACCcctggggagagaaggagtggagcggGCCCTGGAGCGACAGCTCAGAGGAGTGGAAGAAGGTgagcaagagtgagagagagaagctgggCGTCACCGTGCAGGATGACGGAGAATTCTGGATGACGTTTGATGACTTCTGCCAGTACTTCACGGACCTGATCCTGTGCCGCCTCATCAACACCTCTTATCTGAGCATCCACAAAACATGGGAGGAGGAAGTGATGAGGGGCTCCTGGGTCCCCCGCCAAGACCCTCTGAGGAACCGCTCTGGGGGATGCATCAACCACAAGGCCACCTTCCTCCAGAACCCACAGTATGTGTTTGATGTGAATAAGGTAGAGGATGAGGTGTTGATCGCCCTGCAGCAGAAGGAGAGAAGAGCCACCACCAAAGAGGGCAAAGGAGATAACCTGGCCATAGGCTTCGACATTCACCGGGTGGAGCTGAACAGAAAGTACCGCATGCACACGGCCCAGCAGAAGGTGGCGGGCTCCATCTACATCAACTCGCGCTGCGTCTTCCTCAGGAAGGAGCTCAAGGAGGGTCGCTACGTCATCATCCCCACGACTTTTGACCCCGGGCAGCAGGGCGACTTCCTGTTGCGGGTCTTCACCGACGTGCCTTCAGACTGCAAAGAGTTGAACCTAGATGAGCCCCCACAGACGTGTTGGACGGGCATGTGTGGTTACCCCCAGCTGGTCACCCAGGTCCACGTTCTGAGTGCTGAGGGACTCCAGGGCCAGGACTCTAATGGAGcctTGGACCCGTACGTCATCATCacctgtgagggagagagagtgcgcTCGCCGGTGCACAAGGACACGCGGAGCCCCAACTTCGATGTCAAAGGCCTGTTCTACCGCAAGAAGCCCAAGGAAGGCATCCACATTGAGATCTACAATAAGAACGTAATTGTGGATACCTTCCTGGGTCAGGTGACCCTGTCCAGTGACCCAAACGACCGGCAGGAGCAGCACACACTCCACCTGCGCGACAAGGGCAACCGCCAAGACAACGACCTCCCGGGCACGGTCACCGTGCGCCTCATCACCTGCATCACACTCATCAACATATGACGTCACAACCACCGCCGTCGCCGCTCTCGCCATGAGATGTCGAAGGAGCTTGACCTTTGTCATCTTGACGACCTTTCGCCCCCCCTAAACCGAGCATGTCAGTTAAACGGTTAATCCCCCCCCACCCCTGCTCCACCCTACCCAACACCCCCTTCAACATATACACacagctttctttctttctttctgactctttctctcactctcactgttacacacacacacacacacacacacacacacacacacacacacacaggccatgtCTGAGTTCCAAATAGTAGGCTGATTGGGTATGCGAAAATATAAAGTTTTATAGTATGTGAAATATTGAACATTTGGTttgctttaaatgccaggatgtcatactcatttaATCTTtccatctagtagaattcactgcacaCCATTGAGGAAGAGAAGTGTATTTTCAGACCCACGTAGGTGTGACAGCAGCCGATAAACCGCTGATAATCAGCTACCAAAATGAAAGAATGGTGGGAAACAAAGCAATTGTGCGTTAGATGTCTCATTCTCAGTATGGGTGAGCctggtatgttttttttttttaagcttaCTGCCTACATATACTAAACagtacattctaaatagtatGAAGTATGACTAGTACACAGTATGTATATCGttttagtaagtagtaggcaagacTACTCTCTCTACATGCCTtcaactctctctcacacacacacacacacacacttttaacaTGCTCCTGCACCCCTCATGCATCTGCCAGCGTCTCTAAGGGCTATACATCGCCTTAAGGCTGAGTGGGTCCCTTTAGGAGCCTGTGACCAGCCATATGTCGGGTGGGAGGGGGGTCATTGTATTGGGTGGTACACTGGGTGTAGCCTtgcctcctcccccctccatcacatctttcccctcttcccactcccatcccctcagaATACGCTACCCTTCGCTTCTACAGGCTGCCATGGACAAAATAGAGTTTAGCACGGCAAAAAGATTCTGCCTGCATTGCACACGCCCCATTCCCCGTTTAcacacaaatgttttatttaatttacctttatttaactaggcatcaCACTCTTAGCTTAGCAACCGGCGCTTTTGATATGCTCCAGTGGAGTGCCATGTTCAAGTGCTTTACGGGACCAAAGACGGACcaggccctccctccctctctcttttgccGAAGGCAGTTGCCACCGTGCCACGTCAGTCGGTCATCTCTATGGCAACGCCACTGCCTGACGCTTCCTAAGTCATGGGACTCCTGTCAATTGACCTGAATCGCGTGAACTGAGAGACACAGCAGCtgttgtccctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgcattcgtACGTGTTATGCCTGCGCCTTTGAACATCATGCACCTCGCCTGGCTCTGACAGGCTCACGGACACggctggatggagggatgagcagaagaagagagagaagaggcaggAAATCCATCAGTCGACTCCTGCCAAAAACAGCGTGCCATAGCCTTGTTCCTGGCTCTGACTCTGTTGTGACTCGATACCGCTATTCCCGACCGGAACACAGTTTGGATTAGCATCATTTTAAACTATTTGAAATGGTAGTGTGGAAAGAGTGGGTTTTTGTCTGGCCAAGACAGAGACTATCACATCATTCAGAAGCATCACTGGTACAGTCCCCAAAACCGTTAGCATCTCTGTTCACGTAGATGATGTCGCGCTTTCTCTTTTGACCTGCTTTCCACAGGCTGTTTATCTCCCTCTGACAGTGGCAAGCGGCGGAGAAAGAAGATATACAAGGAGATTCAAGCCCCAAACGCTACGTTGTCAAGTATCTTTTCAAAAGTGCAATATGATTGCAGAGACTTTTCTAGGGCAGGATCTGACGTGGGATCCCACGTACGTTAAGAATCATTCCAGAGACACTTGATTTTTTTTGAATGTAATGCGGAGAGCTTTCGACCGACcgatctctcgctttctctctatcGAACCATCAATCCCTTTTACTTGTTTATGTGCTTGTTTCAACGCCTTTTCTTTTTTTGCATTACTCGGAACAACAACGGCATTTAttgcatttgatttatttattgcaTTATCACAGTTTATATATTTATTGAATTAATGTGTCTCGCATAGATCATTTTTAATGATATGTTCATGGCCTTGTATTGTTCTTCCAGTGTTACTATTTTATATTTTCTTTCCATCTTCAGTGTGGGGAAACAAATGGTTGTGTTTAAGAATCAGCATGTTTACACTATTGCACCTCATATCAATGTCATATCAAGATGTTTAAAAGGGTCACTTTTTAAGGTACTGATCAGTGACATCCACCATTCATAACCATATGTTTTTACTATTTACTGTCATTCGTGGCTTCAAATGACGAAAATGCCATTCAAGTGCTGTGTGACGTATGTATTTCCTTCTATGTTGTTCAGTTGCAGACTAAGACAGAGAGACTAAACTGGTTGCTAAAAAAAACCTCTGAAAGGGATAGTTCATGCTAAATCTATTTTTGTGTCGATTTACTCTTACCTTGAGTTGTGTCTGAAGGCCCATAGCGACAGAATCTGCCAGTAGTTAGCATAATTAGAATCGTCCAAATTCATTCATGTAAACAGCGGTGCCGATATTGGCAGAGCTGCTTTGCAAGCTGAAACTTCAAACTGTCTTGTTATAAGGCAATATGTTATACAAGTAACATATAGTAACAAAAactgaaacaaaaaatagaaacaaAAATTGGACAAACAAtttagtaaactgaaataaaataattcagaaaaacatttttaaaactacatgaccaaaagtatgtggatacccgcTCGTTGAACCTCTCATTccaaatcatggacattaatatggagttggtgcccctttgctgctataacatcctccactcttctgggaagactttccactagatgttggaactttgctgggggggacttgcttccattcagccataagaggTTGGGCACTAATGTCGGGCGATCAGGCCTGGCCCgcagtcagggctctgtgcaggctagtcaagtttttccacaccgatctcgacaaaccctttctgtatggacctcgctttgtgcacgcgggtattgtcatgctggaacaggaaagaggcttcctcaaactgttgccacaaaattgtaagcacagaatcgtctagactgtcattgcatgctgtagcgttaagatttcactggaactaaggggcctagccagaccattattcctcctccaccaaagtttacagttggcactatgcattcgggcaggtagcgttctactGGCATCCGTCAAGCCTGTAGCTAACAGGGAAGAAATCCGAGCGTGAATGTGAATATAGGCCTGCCACACATGCATAATGCTACTTTCTGTCCCTAACACACATTTAAACTGAAATGAAATAATATACAATTATATAGAAATTATTTTATCCAACTCAaagtaaatttaaaaaaaatagtacaTTTGTCTGAAGACGAGCTGAAACTAAACTGAATTTGAAATAAAAATCTATAAACGAAAACAAAATCACAACTATAATAACCTAGATGTTTTGTCTCTATGAAGGAAACGTTCAAGTTACTCATAATGGCTGTAATTTAGTCAGGATCATTTTGAGATGATAATGAAGTGATAATgcctgagaagccggtgtttgggggatatattggcacgggtgttgttaggcctaTTCATACGATTCAGTTTCACAATCTTGTTGTGACCCCCACAGACAAACAATGTCTTCAGTTAGGTAGTTTGCCTTATCGTCCTTATCGTTAGCTATTGCTAGTGGCAGTATTACAGCGTCTGTTCTGACCATATCTGAACCAATAATAGTCACCAGGACCAAGGGGTTGTATCACATTGTGGTAGACCATCGCTCGTCTTTTTAACTCCAGACAAATATGTGCCACAGCGGTGTCAAAATGGACGGGAGGAAAATACCATTGTACTGCAGTGTACTGTTGGTTCAGGTTCTGCAGTAGATTAGCTTTGTTTGCCACTCTTGTGGACATACAATAACTAGTTAAACATTGTGGGTATTGTCAAGCTTTTCTCGTTCCGATatgcttttttttgtgtgtctttgCCAAACACGCGTGCTGGTTGAGATCTTATTGCGTTAACATTGCACGTTCTTGTCATTTGCCAGAAGCATCACTTACTCAAGGTACGATTGGTTTACCCTTGGTGAGCGGAGTGTCGATTCGGTGATCTGATTTTTCTGGCTCTGTATACATTTTTCTGATGGTCCATGGCAAATGTTTTAAGGACACAAAACGCATAAGAATGTTCAGAACTTTGGCCAGTTTTATATCAAACCAACAACACCAATGCATGAAGCAAATGACTTCAAATCAGCTTGCACAGTTTGATTTTCAAAGatattatattttttattcaaAGTGTTGTAAACAGTGTTACTACTTTCATAAATTGAAGGCTTCTGTTGCATACTTGCATGTATTTTACAGATTCTGAACATTTGAATTCAGCATCCCaaacagtatgtactgtatatgaaaaGGGGCAGCAGCCAAAGTGTTTGTCCACTACATCAGGACTCCTATTGTGGCAAATGTAGATATATGGTGACGAACAAGGAAGTAGCACAAGGTCCCCCGTGGGCCGCAAACCCCAGTCGCCTGATCTTGACACAAACACCCTTATTGGAGATCCCAATAAGGATATCCCCACTGGAAGAGATTGTTAGGCACCTATCAAGGATAGGATCGTTACACTCTTAAGTTCATCATTACCCCCTCTGTTTACAGGACTTACCTTCGAAAGCCACGATCACTATCCCACTTCTGACGTCCAGTGTGATAAATGTGGAAGTTGTGCTAAGTCTGTAGTGGGCTGTGAACACCAGTTGCCTAGCCTAAAGATGAACACCCTATCCACAATTACAATAGGGCTATCCCAGTTGGGAGGGATTGTACTGTGCTTATCAAGTCCAGGGTCAATACAATATATTCTTTACATTTCAGACGCAAGAGCATATAATAGTTGAGAGACATTTTTAAGCAATGGTCCGCAAGAATACTTGTCAGATACTTATCCAGTTAAATTTGAAAGCAAAACAAATTGTTAGAGATGGACAACATAAAAAATGTGAGGAATACCGAAAATAATTGATTGCAgagagtgtttgtgttgtgtttacGATTTATTTGGATTATGTGTTTTATTAAAGCCTGTGTAATGGCCAAACAGTACTTTCTATGTTTCAGTTGAATACAGACATCACCATGGTGCAATGATTTACCTATGTTAGCTCAGTTAGCCTCGGAGCTACCTGGCGTTTGTTAGCCTGCATACCGCTGCATGTGAACTTTAAAGGACATTGGTCATGAAACGTCATACATGTTTATGCTAGGTGTTACGTCATCTTTACGATAGCATTATGTAGATTATATGACATTGCTCACTCAAATTTGCCAAGTCATGAGACACCTTCTGTGGTGGCCATGTTTCCAAAATGGAGTCTGATACGTTCGACGAAGGAGCTTGTGATTCTCTTGTACTTTTCTGCGGATGTTTATTAACTCGAGGCTGGAATATACTGCATGGTGACACTTATAGAAGATACTAAGGTCTTTATAACGAGTAGCCTATCTTTTATCAATATTTTATACTCTTGTTAATTTTATATATCCAATTAACCTTGTGTTCTCTACGCTTAACACTGATATGTTTACTGATCGCTAGATATCAGAAGGCTGTATCTTATGTACTGTATGCTTATCTGAGTGTTCTTAGGTTGTCTTTTTTTGTTACCGTGCATGTTTGTTTGATTTCATTATCGGTTACACTGTGGTTATTTTATAGTTATGATCTGGAaatcatttattttcattttgtattttatGTCAACTTGTGGCATGACTTTCAAATAAAACATTAAACctgatttttattttcaattgTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1225743 lncRNA downstream 76270 44894614 ~ 44895728 (-) True LOC110537668
TU1225749 lncRNA downstream 85629 44883860 ~ 44886369 (-) False LOC110537668
TU1225711 lncRNA downstream 89751 44879438 ~ 44882247 (-) True G1076713
TU1225670 lncRNA downstream 151606 44815472 ~ 44820392 (-) True G1076674
TU1225638 lncRNA downstream 204550 44760842 ~ 44767448 (-) True G1076648
TU1225851 lncRNA upstream 64622 45085761 ~ 45086637 (-) False G1076821
TU1225852 lncRNA upstream 64622 45085761 ~ 45114971 (-) True G1076821
TU1225861 lncRNA upstream 85334 45106473 ~ 45108160 (-) False G1076828
TU1225864 lncRNA upstream 85334 45106473 ~ 45108160 (-) True G1076828
TU1225858 lncRNA upstream 88248 45109387 ~ 45110929 (-) True G1076827
XM_036937636.1 mRNA downstream 6397 44883793 ~ 44965601 (-) False LOC110537668
XM_021626111.2 mRNA downstream 361688 44607162 ~ 44610310 (-) False plekhb1
XM_021626112.2 mRNA downstream 361688 44607162 ~ 44610310 (-) True plekhb1
XM_021623872.2 mRNA downstream 370849 44595534 ~ 44601149 (-) False LOC110537661
LOC118937885 mRNA downstream 402858 44564224 ~ 44569140 (-) True LOC118937885
XR_005035297.1 mRNA upstream 1685 45022824 ~ 45026146 (-) True LOC118937886
XM_021623886.2 mRNA upstream 8950 45030089 ~ 45072799 (-) False LOC110537671
XM_021623887.2 mRNA upstream 8950 45030089 ~ 45072799 (-) False LOC110537671
XM_021623888.2 mRNA upstream 8950 45030089 ~ 45072799 (-) False LOC110537671
XM_021623889.2 mRNA upstream 8950 45030089 ~ 45072799 (-) False LOC110537671
TU1225480 other downstream 371110 44546519 ~ 44600888 (-) False LOC110537661
TU1225479 other downstream 371110 44580758 ~ 44600888 (-) True LOC110537661
TU1225419 other downstream 516728 44454648 ~ 44455270 (-) True G1076460
TU1224387 other downstream 1197573 43774064 ~ 43774425 (-) True G1075509
TU1224273 other downstream 1311161 43660559 ~ 43660837 (-) True G1075399
TU1225874 other upstream 112713 45133852 ~ 45153337 (-) True gria4b
TU1227478 other upstream 1181465 46202604 ~ 46206088 (-) True G1078323
TU1227962 other upstream 1795304 46816443 ~ 46817065 (-) True G1078783
TU1229609 other upstream 2893412 47914551 ~ 47922446 (-) True LOC110537706
TU1230355 other upstream 3397282 48418421 ~ 48418884 (-) True G1081055

Expression Profile