RNA id: XR_005035297.1


Basic Information

Item Value
RNA id XR_005035297.1
length 1362
RNA type mRNA
GC content 0.37
exon number 3
gene id LOC118937886
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 45022824 ~ 45026146 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGCGGTAGCACAATTTCATGCGTCTGAAAGTACAACATTCATGCTTTCTAACCGATTGGTGTACATTTTTAAACTTAATTCTTCCGCATGTCCTTTTTGCGTGAACAGGTGAATAAAACAGGACTTCTTAATTTCACACATTGTGAGCATTTTTACACTAGATTTTTTTCACCTGTTGTGTTTGCATTTCCAAGTGTAGGAAACGCGTGTCTTCTGTGAAGTTACTTTTCAAAGTAGGAATTTCCCTGTTGAAGGACAATTATATGGTTGATTTTCTCTTTTCCAAAAGCCATAAAGCTTTTCGTAAAGCCTTTAAATTtagaaaaatataactgttttaatatacagtatatataaatatagaagCCTACTGATTGATTCCTTCAAGCAAGCTTATGATCAAAAAACATCGATGGAGGAGCTCCTTCGCTAACGTTACCTATCTCAATCGGCTTCAACGTGGAGACTGTGACTTGCAAGAACCTGAAGTTCCAGGTGTGGGATCTTGATGGACAGACGAGTTTCAGGGAAATGCACGAATAGTCACCATGCAGTATGTCTGAAGTTGGGAAGCAGCCTCAACTGGGAAACACAAATGGGCTGTTCACACAAGCCAACACTTTTCGAGTGAAACTGTGGTATCCAGTCACGACCATATTCTGTAATAGTCAGATTCAGTAATAGTCTGTCATGAATTGCTTTGTCTTGAAATCCATTTTCCTTACCTTATCCTGACAAGGATTTTTTGGAACCTTtagatagaaatgtattgtgtggAACAAACAAGCCTCACTGACTGTAGAATAACAAATCATGTCAGCCTTATTTATAACATTTCTATTGGCAACATTTGCCTACTGAAAGTGCCCCTGGAAATCGAGGGGTAcaatcaggggtgtattcattacacaaAATCTATTGCAAAACGTTTAGTCTGTCACAAAACGTTTTGTAACAGAAACCGTTTACTGCCGATGCTGTTCAGTTCCATTTTGTTCTTAACTCCCTTTCCTCTACTATTACTTTTCCTAGCTTCCTTTCCTCGTTTCCTTTCCTATTGTTTGTGTTTCCTTTCCTGGATTGGGATTGGGATATTTTAAATTGCTAttacttttttttacatttgtgaaTGATGTATGCAAGGTGGCTGACTGTACATAAAAAAGCAATTTTATGTCAGTTCTAAATTTAAATTACACTTCAATTGTTGTGGCAATGAGGGCTTCAAATAGTGATCAAATAAAATAAgtgtattggtcgcatacacagttTTGTACGTCAAAGAGCATTTGGAATTTTACACCAGTGACAAAGTGTACACACTACTTTTTTCCCCAATATAGTGATTTCTttttaataaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1225798 lncRNA downstream 4982 44972016 ~ 45017842 (-) True LOC110537669
TU1225743 lncRNA downstream 127096 44894614 ~ 44895728 (-) True LOC110537668
TU1225749 lncRNA downstream 136455 44883860 ~ 44886369 (-) False LOC110537668
TU1225711 lncRNA downstream 140577 44879438 ~ 44882247 (-) True G1076713
TU1225670 lncRNA downstream 202432 44815472 ~ 44820392 (-) True G1076674
TU1225851 lncRNA upstream 59615 45085761 ~ 45086637 (-) False G1076821
TU1225852 lncRNA upstream 59615 45085761 ~ 45114971 (-) True G1076821
TU1225861 lncRNA upstream 80327 45106473 ~ 45108160 (-) False G1076828
TU1225864 lncRNA upstream 80327 45106473 ~ 45108160 (-) True G1076828
TU1225858 lncRNA upstream 83241 45109387 ~ 45110929 (-) True G1076827
XM_021623883.2 mRNA downstream 1685 44971998 ~ 45021139 (-) False LOC110537669
XM_036937636.1 mRNA downstream 57223 44883793 ~ 44965601 (-) False LOC110537668
XM_021626111.2 mRNA downstream 412514 44607162 ~ 44610310 (-) False plekhb1
XM_021626112.2 mRNA downstream 412514 44607162 ~ 44610310 (-) True plekhb1
XM_021623872.2 mRNA downstream 421675 44595534 ~ 44601149 (-) False LOC110537661
XM_021623886.2 mRNA upstream 3943 45030089 ~ 45072799 (-) False LOC110537671
XM_021623887.2 mRNA upstream 3943 45030089 ~ 45072799 (-) False LOC110537671
XM_021623888.2 mRNA upstream 3943 45030089 ~ 45072799 (-) False LOC110537671
XM_021623889.2 mRNA upstream 3943 45030089 ~ 45072799 (-) False LOC110537671
XM_021623890.2 mRNA upstream 3943 45030089 ~ 45072799 (-) False LOC110537671
TU1225480 other downstream 421936 44546519 ~ 44600888 (-) False LOC110537661
TU1225479 other downstream 421936 44580758 ~ 44600888 (-) True LOC110537661
TU1225419 other downstream 567554 44454648 ~ 44455270 (-) True G1076460
TU1224387 other downstream 1248399 43774064 ~ 43774425 (-) True G1075509
TU1224273 other downstream 1361987 43660559 ~ 43660837 (-) True G1075399
TU1225874 other upstream 107706 45133852 ~ 45153337 (-) True gria4b
TU1227478 other upstream 1176458 46202604 ~ 46206088 (-) True G1078323
TU1227962 other upstream 1790297 46816443 ~ 46817065 (-) True G1078783
TU1229609 other upstream 2888405 47914551 ~ 47922446 (-) True LOC110537706
TU1230355 other upstream 3392275 48418421 ~ 48418884 (-) True G1081055

Expression Profile