RNA id: XM_021623900.2


Basic Information

Item Value
RNA id XM_021623900.2
length 2202
RNA type mRNA
GC content 0.46
exon number 6
gene id LOC110537675
representative False

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 45466504 ~ 45504876 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAGTGTGTGAGAAAGAAAAGTGAAGAGCGGGGATGTGGTGTTGGCGTGGATTGCGTCAATTTCCCGGATTGAGTTCGGACGCCATCTTTAAACCAGTGCTACCGGTAGTTAGATAGTGGGGACGCTGAGCTGCTGCTCCACCAGGAACCGCAGTCTGAGACAGACCCACGGTCGAGCCTCTCCTTCAGGCCGCACATCATCGACAGCCCGACCTCGAACACCATGGCAGATCGAGAACACTTAGTATACCAGGCCAAACTCGCCGAACAGGCCGAGCGATACGATGaaATGGTGGAGTCCATGAAGAATGTGGCCGGCATGGACGTGGAGCTGACGGTGGAAGAGCGGAACCTGCTGTCGGTGGCGTACAAAAACGTGATCGGAGCCAGAAGAGCATCCTGGAGGATAATCAGCAGCCTCGAACAGAAAGAAGAGAACAAAGGAGGCGAAGACAAACTAAAGATGATCAGGGAATACAGGCAAACGGTGGAGACTGAGCTAAAATCAATCTGTAAGGACATTCTGGATGTACTGGACAAGCACCTCATTCCAGCTGCAAACACGGGAGAATCAAAGGTTTTCTACTACAAAATgAAGGGAGACTACCACAGGTACCTGGCAGAGTTCGCCACGGGTAACGACAGGAAGGAGGCGGCGGAGAACAGTTTGGTAGCCTACAAAGCCGCGAGCGACATCGCCATGATCGAGCTCCCCCCGACTCACCCCATCCGCCTGGGACTGGCACTCAACTTCTCCGTATTTTATTATGAAATTCTCAATTCCCCTGACCGCGCATGCAGGTTGGCGAAGGCGGCATTTGACGATGCCATTGCAGAACTGGACACGCTGAGCGAGGAGAGCTACAAGGACTCCACGCTCATCATGCAGTTGCTACGCGACAACCTTACATTATGGACTTCAGACATGCAGGGAGACGGTGAAGAACAGAATAAAGAAGCACTGCAAGATGTGGAGGATGAGACCCAGCAGTGAGACTTTACGGccaattccctctctctctctctccctcctattaCCTCCCCTATCTGCCCCGCTAGCCCCAGGTCCTACTACGTGTCACAGTGAGAGCTCCCAAACTTGGCTTTTACTCCCGACGTCCACTCGCTCTATTTCTCCCCACCTCTTCTTTCTTTAATTCTTTCTTTATGTTCTATCACTCTCTGTCAGCTCATAGCCCCTCTGTGCTTCCTAGGGCTATCTCTTCTGGTTTTTATTTTCTTATAAAAAATCCTATTAAATTCACCTATTTCAGTGGAAATAATATACTTCCACGTTAAAACACaacagaaaatgtaaaaaactaaAGCTTCGAGCTGTTCCTGGTTGTTACCTTTTATTGATTTGTATAACTCCTGTTGCAAGCCTGTAAGGTTCACATCGTTCCCTTTACTTCctttttttgttaattttttagTTTACATTTTTGCCATGTCATCAGTTGCCAAGTGTGTTGCTTGGGGTCGTCAACGTTCACACAATTAACGAGTTGATTTTTAAAACACAAACGTTTGCTGTAACTCTTTTTCCATAACTGTGATGTCTTTGTGCTACTTTACGCTAATCGTCTAAGCTTTTGGTCGCAAATTAGGGATGGTTGTGAATTGGCGGTTTTTAAAAGGGACATTTTAATGCCCTCTTTATTTGTGATTCTTTCTCTCGCGCTATCTCTCGTTGCAAGACTCTGTTTTATCAATGTTGATAGCTGAACTTCCCATGACTTTCTCTTTGCGATCACCCCTCAAGTCCAGGGCATGGACCACGCATTTTTGTGCTCAAGAGGCTGTAGCGCTGCTTTTTTACTCATTGCTGACGTAAGGACACGATGGCTTGTAGCAgttggagggggaaaaaaactatctccctccctctgatGTTAGGTAAAGCAGGTTTGCATTGGCACTGTCAAAATAAAAACCTGCTTATGTCATCTTGTATCCCCATTCTGTTCCAGAatgttccctttctctctctctctttctttctttctttctttctttttttctctctttctctctgtcctgcccCCATATTTTCTCTCTTGTTCAGTATGTGTAACTTGAATCTGATTTGTACTACTGGATATTCTGACTGGAGCCACACGCACTGTCTGTATTCTTACAGAAACACAGCATGGAAATTAACATTAAACTTCAAATTAAAAAAAGGAACTTAAATTAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1227072 lncRNA downstream 4383 45461824 ~ 45462121 (-) True G1077959
TU1226123 lncRNA downstream 68174 45398006 ~ 45398330 (-) True G1077078
TU1226121 lncRNA downstream 68742 45397545 ~ 45397762 (-) True G1077076
TU1226118 lncRNA downstream 69621 45396665 ~ 45396883 (-) True G1077073
TU1226116 lncRNA downstream 71853 45394448 ~ 45394651 (-) True G1077071
TU1227073 lncRNA upstream 6189 45511065 ~ 45514278 (-) True G1077960
TU1227151 lncRNA upstream 89981 45594857 ~ 45595153 (-) True G1078036
TU1227141 lncRNA upstream 95304 45600180 ~ 45604384 (-) True G1078026
TU1227155 lncRNA upstream 97105 45601981 ~ 45608588 (-) False G1078039
TU1227160 lncRNA upstream 101310 45606186 ~ 45613373 (-) True G1078040
XM_036937642.1 mRNA downstream 169600 45136274 ~ 45296904 (-) False gria4b
XR_005034988.1 mRNA downstream 169600 45145521 ~ 45296904 (-) False gria4b
XM_036937641.1 mRNA downstream 169604 45133844 ~ 45296900 (-) False gria4b
XM_036937643.1 mRNA downstream 169604 45190415 ~ 45296900 (-) False gria4b
XM_036937640.1 mRNA downstream 169607 45133844 ~ 45296897 (-) False gria4b
XM_021623902.2 mRNA upstream 10485 45515361 ~ 45527757 (-) True LOC110537676
XM_021623903.2 mRNA upstream 53200 45558076 ~ 45573323 (-) False LOC110537678
XM_021623904.2 mRNA upstream 53200 45558076 ~ 45573323 (-) False LOC110537678
XM_021623905.2 mRNA upstream 53200 45558076 ~ 45573323 (-) True LOC110537678
XM_036937650.1 mRNA upstream 85885 45590761 ~ 45644071 (-) True LOC110537679
TU1225874 other downstream 313167 45133852 ~ 45153337 (-) True gria4b
TU1225480 other downstream 865616 44546519 ~ 44600888 (-) False LOC110537661
TU1225479 other downstream 865616 44580758 ~ 44600888 (-) True LOC110537661
TU1225419 other downstream 1011234 44454648 ~ 44455270 (-) True G1076460
TU1224387 other downstream 1692079 43774064 ~ 43774425 (-) True G1075509
TU1227478 other upstream 697728 46202604 ~ 46206088 (-) True G1078323
TU1227962 other upstream 1311567 46816443 ~ 46817065 (-) True G1078783
TU1229609 other upstream 2409675 47914551 ~ 47922446 (-) True LOC110537706
TU1230355 other upstream 2913545 48418421 ~ 48418884 (-) True G1081055
TU1230892 other upstream 3396532 48901408 ~ 48905274 (-) True G1081571

Expression Profile