RNA id: XM_021623902.2


Basic Information

Item Value
RNA id XM_021623902.2
length 2514
RNA type mRNA
GC content 0.50
exon number 3
gene id LOC110537676
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 45515361 ~ 45527757 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTACATCCGGTGGATGAGGTCAATCTTTCCCCAAAGATCCGCCATTTCAGCCTCTGAGTTTTATATTGCAAATTACTTAAGAGATTTATTTTAAAACGCCTTGACAAATAAATTATAGATTTCTGGTTGCCACAATTAATTCTTAATTAAGGGGTTAACTGTATTGTTTCGTGGGACTCTGTGAAATGTACATAGATGTAACGGTTTAAAGCGGTATCGATGCCATGATTTTTTCCCGGAGCGTGTTCCTTAGTGAACCAAAGTTTTTGTATGAGATGAATCCCGATTGCGAATAGGGAGAGGCAAGGGGAAGGCCTTGGATCCTCGGAGTGGATTTGGAGCCATGGCCGGGAATTTTGATGCCGAGGACCGTGCTAGCTGGTACTGGGGAAGGTTGAGCCGACAGGAGGCGGTTTCTCTCTTGCAGGGTCAGAGACATGGCGTGTTCCTAGTCAGGGACTCGATTACCAGTCCTGGGGACTACGTGCTATCCGTCTCAGAAAACTCAAAAGTCTCACATTATATAATTAACAGCATCAGTAACAACCGGCAATCTGGATCAGGTCTGGCCCCCCCACGGTTCCGCATCGGGGATCAGGAGTTTGACGCCCTACCCGCCCTGCTGGAGTTCTACAAGATCCACTACCTGGACACCACCACTCTGATCGAGCCCATCAGCAAGGCCAAGCATGCAGGCTTCGTGAGCTGTGCCGCCGCTGCATCAGGCGGCGCCCTACAGGAGGCAGAGTTTGTTCGCGCCCTCTTCGACTTCCCTGGCAACGACGAGGAGGACCTGCCCTTCCGCAAGGGCGACGTGCTGCGCGTGCTGGAGAAGCCTGAGGAGCAGTGGTGGAACGCGGCCAACCAAGAGGGCCGTGTCGGCATGATTCCCGTGCCCTACGTGGAGAAGTACCGGCCTGCCTCGCCCAACTCCGTGGTTGCTCCGGCGGCAGGGAGGCCTGGCGGGGCAGGAGGAGTAGGCGGAGTACCGGCAGGTGTTGGAGCCAGCACTACCGACGGAGCAGCTCCCCAGCTGCCCCCGCCTCTGGGGGAGCCGGGCCAGTATGCCCAGCCTGTGGGCAATACACCCCTGCCCAACCTGCAGAATGGGCCTGTCTACGCCCGTGCCATTCAGAAGAGAGTGCCCAACGCCTACGACAAGACGGCGCTCGCCTTGGAGgTCGGAGACATGGTAAAAGTGACCAAGATCAACGTGAACGGCCAGTGGGAGGGCGAGTGCAAGGGCAAGCATGGCCACTTTCCCTTCACGCACGTCCGGCTTCTGGACCACCAACACCCTGAGGATGAGAGCTGAGAGACACACTTAGTCTCACTCCTCACTTCACAAAATCCCTCTGTGATTGTTTCTCACAAATGATAGAAAGAGCACACAGGATATACGGACTACAGTGGTCAGGAGTTGCAACTCAGCAGCTGTTGTTGCCAATGGGGCTGGAGTACACTCCCCTcccttcacatacacacacagaatagAGTTTACACTTCCACCCCAGTATTGAAGTCCTGATACACGACACACAGCAGCGTTTATGACCCCTCTCCCATGTTATCCACGAAATCctcctctacacacacatacacacgtacgcacgcacacaatTCAGATACTTGTGTATATGTGGCTTCTCTCACAGACTCATGGATCACCCTTTTGTAGTAACGGACTGTGAACTTGGCAGTGAGAAGAGTAGCCATCCTGACTCCTAATTTTGACTCCCTCTTGTGGAGACAGATGCTCACTGCGACTGAAACCGACCATTGCTGCACTTCACAGACAGCAGGAGTTACCACAGCACACTCCACTACTCACCACAGGGGCTCTAACCCAGCCCCTCTCTGCTACAAACCCCACACTACAAACCCCCAAGTCCTCTTTTTGTACTGAAATGAAAAATATTATGATAGAATTATGACAGGTACAGCAACTGCCAAaagaaaggaaacacttgagtaaatgatggATACAAAGTattttgaaagcaggtgctttcaCACAGGTGCGGTTCCTCAGCAATTcctaagcaattaacatcccaacatgcttagggtcatgtatgaaAATGCTGGGCAGGCATTGTTTTGGCTaacatggctatgcccccataggatgacaatgcccccatccacagggcattaATGGTCACttaatggtttgatgagcatgaaaacgatgtaaaccatatgatgtggccatctgtcaccagatctcaacccaattgtaCACTTATGcgagattctggagtggcgctTGAGAccaccaacaaaacaccaaatgatagAATTTCTCAtggaatggtgtcacatccctccaatagagttccatcCAGAAACGTGTATAATCTATGGCAAGGCACATTGCTGTTCTGGCTCATGGTGGcacaacgccctattaagacactattGGCGTTTCCTTTTTTTgggcagatatatatatataatatagtaccagtcaaaagtttggacacaccaactcattcaagagtttctttattt

Function

GO:

id name namespace
GO:0007520 myoblast fusion biological_process

KEGG:

id description
K04438 CRK, CRKII; C-crk adapter molecule crk

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1227073 lncRNA downstream 1083 45511065 ~ 45514278 (-) True G1077960
TU1227028 lncRNA downstream 23660 45489837 ~ 45491701 (-) True LOC110537675
TU1227079 lncRNA downstream 45159 45469627 ~ 45470202 (-) True G1077966
TU1227072 lncRNA downstream 53240 45461824 ~ 45462121 (-) True G1077959
TU1226123 lncRNA downstream 117031 45398006 ~ 45398330 (-) True G1077078
TU1227151 lncRNA upstream 67100 45594857 ~ 45595153 (-) True G1078036
TU1227141 lncRNA upstream 72423 45600180 ~ 45604384 (-) True G1078026
TU1227155 lncRNA upstream 74224 45601981 ~ 45608588 (-) False G1078039
TU1227160 lncRNA upstream 78429 45606186 ~ 45613373 (-) True G1078040
TU1227158 lncRNA upstream 82195 45609952 ~ 45612597 (-) True G1078039
XM_021623900.2 mRNA downstream 10485 45466504 ~ 45504876 (-) False LOC110537675
XM_036937645.1 mRNA downstream 10522 45466504 ~ 45504839 (-) False LOC110537675
XM_036937644.1 mRNA downstream 10524 45466504 ~ 45504837 (-) False LOC110537675
XM_036937642.1 mRNA downstream 218457 45136274 ~ 45296904 (-) False gria4b
XR_005034988.1 mRNA downstream 218457 45145521 ~ 45296904 (-) False gria4b
XM_021623903.2 mRNA upstream 30319 45558076 ~ 45573323 (-) False LOC110537678
XM_021623904.2 mRNA upstream 30319 45558076 ~ 45573323 (-) False LOC110537678
XM_021623905.2 mRNA upstream 30319 45558076 ~ 45573323 (-) True LOC110537678
XM_036937650.1 mRNA upstream 63004 45590761 ~ 45644071 (-) True LOC110537679
XM_021623910.2 mRNA upstream 149621 45677378 ~ 45690460 (-) False LOC110537682
TU1225874 other downstream 362024 45133852 ~ 45153337 (-) True gria4b
TU1225480 other downstream 914473 44546519 ~ 44600888 (-) False LOC110537661
TU1225479 other downstream 914473 44580758 ~ 44600888 (-) True LOC110537661
TU1225419 other downstream 1060091 44454648 ~ 44455270 (-) True G1076460
TU1224387 other downstream 1740936 43774064 ~ 43774425 (-) True G1075509
TU1227478 other upstream 674847 46202604 ~ 46206088 (-) True G1078323
TU1227962 other upstream 1288686 46816443 ~ 46817065 (-) True G1078783
TU1229609 other upstream 2386794 47914551 ~ 47922446 (-) True LOC110537706
TU1230355 other upstream 2890664 48418421 ~ 48418884 (-) True G1081055
TU1230892 other upstream 3373651 48901408 ~ 48905274 (-) True G1081571

Expression Profile