RNA id: TCONS_00040362


Basic Information

Item Value
RNA id TCONS_00040362
length 788
RNA type mRNA
GC content 0.50
exon number 6
gene id XLOC_020334
representative False

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 17499905 ~ 17506843 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AATCGGACATCGCTAAATTCAGGAGAGATCCGTTGCTAAATAACAACATTTCAGTGCGGTTAACCAACCATGGGGACCCGTGACGACGAATacgattatttatttaaagGTTTCatctaaagaaaatgaatggtgaCCATGTTGCGGAGGACACATGGTTCTCATTGGAGACTCTGGGGTGGGGAAGAGTAACCTGTTGTCCCGTTTCACTCGGAACGAGTTTAACCTGGAGAGCAAGAGCACCATTGGTGTGGAGTTCGCAACCCGCAGCATCCAAGTGGACGGGAAGACCATTAAAGCTCAGATCTGGGATACAGCAGGACAGGAACGCTACAGAGCAATAACATCAGCGTACTACCGGGGTGCAGTTGGAGCTCTTCTGGTCTACGACATCGCAAAACATCTGACTTACGAGAATGTGGAGCGCTGGCTGAAGGAGCTGCGGGATCATGCGGATAACAACATCGTCATCATGCTGGTGGGCAACAAGAGCGACCTGAGGCACCTGAGGGCCGTGCCCACTGATGAGGCCAGAGCTTTTGCAGAGAAGAACAATCTCTCCTTCATTGAAACATCGGCGTTGGACTCCACAAATGTGGAGGAGGCATTTAAAAACATACTAACAGAAATCTATCGGATTGTGTCACAGAAACAGATGGTCGACAGGCCCGGGCACGATGAGTCTCCTGGCAATAACGTAGTGGACATCAGCGTGCCGCCCACTACTGACGGGTTAAAGGGCAACAAATTTCAGTGCTGTCAGAACCTGTGACCCAACACCCCCTCCC

Function

GO:

id name namespace
GO:0006887 exocytosis biological_process
GO:0045054 constitutive secretory pathway biological_process
GO:0045055 regulated exocytosis biological_process
GO:0005768 endosome cellular_component
GO:0055037 recycling endosome cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-2860 Predicted to enable GTP binding activity and GTPase activity. Predicted to be involved in constitutive secretory pathway and regulated exocytosis. Predicted to be active in recycling endosome. Is expressed in several structures, including caudal vein plexus; gut; nervous system; pectoral fin bud; and pronephric duct. Orthologous to human RAB11B (RAB11B, member RAS oncogene family).

Ensembl:

ensembl_id ENSDART00000133793

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00042107 lncRNA upstream 688556 16810284 ~ 16811361 (+) True XLOC_020324
TCONS_00042106 lncRNA upstream 1562649 15788139 ~ 15937268 (+) True XLOC_020308
TCONS_00040314 lncRNA upstream 1688795 15787981 ~ 15811122 (+) False XLOC_020308
TCONS_00042105 lncRNA upstream 2139733 15358159 ~ 15360184 (+) True XLOC_020300
TCONS_00041893 lncRNA upstream 2398491 15099470 ~ 15101426 (+) True XLOC_020293
TCONS_00040366 lncRNA downstream 25231 17531024 ~ 17534007 (+) False XLOC_020336
TCONS_00040370 lncRNA downstream 33370 17539163 ~ 17541057 (+) True XLOC_020336
TCONS_00040373 lncRNA downstream 101960 17607753 ~ 17611582 (+) True XLOC_020337
TCONS_00040376 lncRNA downstream 278849 17784642 ~ 17803402 (+) True XLOC_020338
TCONS_00042108 lncRNA downstream 737965 18243758 ~ 18304288 (+) False XLOC_020344
TCONS_00040358 mRNA upstream 45460 17399124 ~ 17454457 (+) False XLOC_020332
TCONS_00040359 mRNA upstream 45460 17433968 ~ 17454457 (+) False XLOC_020332
TCONS_00040356 mRNA upstream 47213 17312111 ~ 17452704 (+) False XLOC_020332
TCONS_00040357 mRNA upstream 139459 17359346 ~ 17360458 (+) True XLOC_020333
TCONS_00040355 mRNA upstream 199300 17286841 ~ 17300617 (+) True XLOC_020331
TCONS_00040364 mRNA downstream 3629 17509422 ~ 17521293 (+) True XLOC_020335
TCONS_00040365 mRNA downstream 25227 17531020 ~ 17541277 (+) False XLOC_020336
TCONS_00040367 mRNA downstream 25421 17531214 ~ 17543979 (+) False XLOC_020336
TCONS_00040368 mRNA downstream 25421 17531214 ~ 17544141 (+) False XLOC_020336
TCONS_00040369 mRNA downstream 31196 17536989 ~ 17539112 (+) False XLOC_020336
TCONS_00040360 other upstream 49651 17443345 ~ 17450266 (+) True XLOC_020332
TCONS_00040335 other upstream 860492 16639310 ~ 16639425 (+) True XLOC_020322
TCONS_00040326 other upstream 1196589 16302317 ~ 16303328 (+) True XLOC_020314
TCONS_00040324 other upstream 1222292 16277498 ~ 16277625 (+) True XLOC_020313
TCONS_00040312 other upstream 1765074 15732967 ~ 15734843 (+) True XLOC_020306
TCONS_00040371 other downstream 100795 17606588 ~ 17607337 (+) False XLOC_020337
TCONS_00040377 other downstream 318666 17824459 ~ 17824573 (+) True XLOC_020339
TCONS_00040381 other downstream 660806 18166599 ~ 18175378 (+) False XLOC_020342
TCONS_00040385 other downstream 741499 18247292 ~ 18280440 (+) False XLOC_020344
TCONS_00040386 other downstream 747365 18253158 ~ 18280440 (+) False XLOC_020344

Expression Profile

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