RNA id: XM_021623934.2


Basic Information

Item Value
RNA id XM_021623934.2
length 2644
RNA type mRNA
GC content 0.45
exon number 9
gene id LOC110537697
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 46322347 ~ 46343466 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTTGATTGGCAAGTTGTTTGTTTCACTGTTACCAGCTGCTGGACGATTCCAATCCCTGTCGGAGAGAAAACACGCGGACCGACAGTCCTTCTCAATTTTCTTCCTCCCTGTTTACCTCATTGTGCTTTCTTTTATTTCACCCTGCTTCTGTCTTGCTCTCTTTTACTCTTTTCCTAAGTGGATAACTTTTTCTTCTCCCTCCTTTGTTTTCTGCTCAGTTTCACGGTTTTGATACGCTCTAGCTATATAGCATaggtatatttatttatttttattagaaAGGAtatcattttttaatttttttttttagatattcGTCAAATGAGAAGACGCAAAAGATGGAGTTGCATATTTTAGAACACAGTTTGAAAGTAGCGAGTATAGCAAAAGAGGGCATTCAGATTTGCACTCATGGATTAATCAAACTCGCCTTCTTGCCCTCTAAAACAAGATGCAAATTTTTCAGTTTGACGGAAACTCCGGAGGACTATACCCTTATCGTCGACGAGGAAGGCTTCAAAGAACTGCCTGAGTCGGAGCACCTTAGTGTCGCCGAAGCCACGTGGTTGGCTCTCAATGTGGTGTCGGGGGGTGGGAGCACCACCAACTCTCAGCCAATCGGAGTCACCAAAATAGCCAAGTCTGTCATCGCCCCCTTGGCAGACCACAACATCTCTGTGTTTATGCTGTCTACCTATCAGACGGATTTCATCCTGGTTCGAGAGCGGGACCTGCCCATGGTCATGCACACCCTGTCTTCTGAGTTCACCCTGATGAGGGTGGTCAACGGAGAGACCGTAGCCGCCAACAGCCTAGGAGTCACCAACGGCTTTGTCAAGCCTAAACTTGTGCCCCGTCCCATCATCCACCCTCTGTCCAGCCCCAGTAACATGTTCTGTGTGACCAGCCTGGACCCGGACACATTGCCCTCGGTGGCCACCCTGCTCATGGACGTCATGTTCTACTCAGGCGGGATAAAGGAGCCTGGGGCATCTAGTGAGGACACTGGACACATCcgcttcttctctttctctctgattgAGGGCTACATCTCTCTCGTCATGGACGAGCAGACGACACAGCGGTTTCCCAACAATGTCCTCTTCACTAGTGCTTCAGGGGAGCTTTGGAAAATGGTTCGCATTGGAGGACAGCCTTTAGGATTTGACGAGTGTGGTATCGTGGCTCAAATATCGGAACCCCTGGCGACTGCTGACATTCCAGCTTATTACATCAGTACCTTCAAGTTTGACCATGCCCTGGTCCCAGAAGAAAACATCCAGAGTGTGATTGGAGCTTTGAGGACCAATGAGAGCGCAGGACAGTGAAGGCGAGGTGGAAAGAGACCGTGGAACGAGCAATTTATTATGTCAAACTCTTACAAAAAAAAAGTGCCAAGAGGGTAATGCAAAGCTTGAGTCGTGTAGACGGacgactgtgtgtgcgtgtgtgcgtgtgtagacATGCTTTGTACAACGACCAGCAATGTGTCCCTCCTATTCTGAGATGGTTCCAACTACACTCCAAGCCACTCCCTTGAGCATCCACTCTTACCCCAACCAACATCCACCTCTTTGGGGACCCAAAGCAAGAGTGACTACAGTGTTTTTCTTTTCTCTCgctctatttctttctcctcttccttcccctcAGACCATTTCACCATGGCAACGTGACCTACCGAATTTGGGCCTATTTCTTCGACACCAGCCCCTGAGATACTGCAAAGCGGCCCTCACCTCCTTTTACTCTTCATGTGTCACCCACGCGGTCCATGACTGCCTATAGTGATAGGTGTTGCTTTAGTATACCAGACTTTCCTTCCTAACTTTACATTGTTTTTCCATAACCATCATACTGTATTAGTTACCAGTCCTCTTATGGAAAGAAAGAGAATGTACTTTACAAACAATTATCAATATTTCCAttctttgtatttatttttctcaGTGCCAAGAGGTTTTGAAGGCCTTGACCGATGCCTTGTCTAATGCTCAGCGTGTGTGCAATTTCAGATCAGATTTTGTCAGATGGGGAAATGAGACTGGTGAATGTTGCTCTGTTCTGGTGATGAGCGTGAAATGACATTTACTGACGAATCGCAGAGCCACTGATCTATAGAACATATCATATAAATAGTCTAGTCTATATATATGCCAATTTTCATGTAGTTTCAGGAGAACTAGGTTATCGTTTTGCGTTGAGTGCCACACCATGCCTGACTCCAAACCAGTCCTTTACCACAAACTAGAATAATAACTTCAACGCTAGTAAAGCCAGCGTGGTGAAGTGGTAGGGGCCTTGTCATTTATTCTGTTGTGAATGTTTTTTGTGGTCGTGGCTCATTGAACCAGCCCTGCAACCCTGTTGTCAGTTTAGGCAATCATCCCCCACCCCAGTCTGCACTTTAATACAGGTCCATCTTACTGACCTGCTATACTGATGTGAAAACAGGGGAAGGCTTATTTTATCCTTGAAGGATTTCTTGATAAGTAGACTTTTGTTGGTCTTAAACCATTGGTGGGTATTATATTCTCTGTCAAGCAAAAGCTTTCTTCGGTTAGCTTTGATATACAGAAACCATGTATTTATCAGTGTTAACATAAAGGGTGACATTTCTTCTGataaagaaagttatttgtt

Function

GO: NA

KEGG:

id description
K23081 CASTOR2; cytosolic arginine sensor for mTORC1 subunit 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1227547 lncRNA downstream 16627 46305470 ~ 46305720 (-) True G1078384
TU1227544 lncRNA downstream 18648 46303494 ~ 46303699 (-) True G1078381
TU1227543 lncRNA downstream 19024 46302936 ~ 46303323 (-) True G1078380
TU1227537 lncRNA downstream 29378 46292746 ~ 46292969 (-) True G1078374
TU1227536 lncRNA downstream 29687 46292405 ~ 46292660 (-) True G1078373
TU1227708 lncRNA upstream 175521 46518987 ~ 46519204 (-) True G1078543
TU1227716 lncRNA upstream 186194 46529660 ~ 46529878 (-) True G1078551
TU1227728 lncRNA upstream 212029 46555495 ~ 46555908 (-) True G1078563
TU1227776 lncRNA upstream 284455 46627921 ~ 46628240 (-) True G1078611
TU1227781 lncRNA upstream 290395 46633861 ~ 46634092 (-) True G1078616
XM_021623931.2 mRNA downstream 78369 46241530 ~ 46243978 (-) False foxr1
XM_036937657.1 mRNA downstream 78369 46241530 ~ 46243978 (-) True foxr1
XM_036937656.1 mRNA downstream 78376 46241530 ~ 46243971 (-) False foxr1
XM_021623930.2 mRNA downstream 78381 46241530 ~ 46243966 (-) False foxr1
XM_021623924.2 mRNA downstream 298671 46017383 ~ 46023676 (-) False LOC110537691
XR_005035334.1 mRNA upstream 18862 46362328 ~ 46362459 (-) True LOC118937925
XM_021623936.2 mRNA upstream 39036 46382502 ~ 46515840 (-) False LOC110537698
XM_036937658.1 mRNA upstream 39036 46382502 ~ 46635571 (-) False LOC110537698
XM_021623935.2 mRNA upstream 39036 46382502 ~ 46689580 (-) False LOC110537698
XM_036937660.1 mRNA upstream 257382 46600848 ~ 46689581 (-) False LOC110537698
TU1227478 other downstream 116259 46202604 ~ 46206088 (-) True G1078323
TU1225874 other downstream 1169010 45133852 ~ 45153337 (-) True gria4b
TU1225480 other downstream 1721459 44546519 ~ 44600888 (-) False LOC110537661
TU1225479 other downstream 1721459 44580758 ~ 44600888 (-) True LOC110537661
TU1225419 other downstream 1867077 44454648 ~ 44455270 (-) True G1076460
TU1227962 other upstream 472977 46816443 ~ 46817065 (-) True G1078783
TU1229609 other upstream 1571085 47914551 ~ 47922446 (-) True LOC110537706
TU1230355 other upstream 2074955 48418421 ~ 48418884 (-) True G1081055
TU1230892 other upstream 2557942 48901408 ~ 48905274 (-) True G1081571
TU1231158 other upstream 2644546 48988012 ~ 48988353 (-) True G1081813

Expression Profile