RNA id: XM_036937661.1


Basic Information

Item Value
RNA id XM_036937661.1
length 1457
RNA type mRNA
GC content 0.55
exon number 9
gene id LOC110537698
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 46382502 ~ 46689581 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gctagcttcacacagGTAAGGTAACTGAACAAGGAAGCACAAGAGCACTGCATGGTTGTCGTTTGCTCCCtgtgacacacaaaaaaaatcccaTTCCCATATCCCTTCGAATACATTTGCTAGAGGAAACAGTAGAAAAGTCCACCGCAGATGCCAAAGCTTCCCTGAATTTGATGTGTTTTTATGGTACCAGAGTTCCCGTGAAGTTCCAGGAGCAGCTGGAGCAGAGAGAACCTGCAAGGACCCGCTAATAACCTCCGGACACGCAGACCTTGTCATCAGCCCTCAAGAGATGACAGAGGCCATGTTTGGGACAGGGAATGATCAGTGGGTCTGTCCCAACGACCGGCAGCTGGCCCTTCGAGCCAAGCTGCAGACAGGCTGGTCGGTGCACACCTTCCGTACAGACCGACAGAGGAAAAGCCAGATGCTGGAGCAGCAGGAGGTGGAGATCATCCTTAGTGTCATCCGCAGGGCTGAGCAACTTGAGCATATTGAACAGCTCCGCATCGGgagGCTGGTGGAGCGTCTGGACAACATGAAGAAGAGTGCGCTGGGGAACGGCCTGTCCCAGTGCCTGCTGTGTGGGGAGGTCCTGGGCCTCTTGGGAAACCCCTCCATCTTCTGTCAGGACTGCTGCAAGAAAGCATGCACCAAATGTGGCATTGAGACCCAGTGCAGTCAGAAGACAACCCAGTGGCTGTGCAAGATCTGCAGTGAACACAGAGAGGTGTGGAAGCGCTCTGGAGCCTGGTTCTACAAGGCCCTGCCCAATTACGTGCGCCCAGGGAAGGAGGGGCAGAGTGGTGCTGCTCTCGGACTGCAAGGGGCCCAGAGAGGAGGGCAGAAGATGGCCAAGAGTTCCACAGTCAGTCAGACCTACACATGGGCATACAGCAAAGTGGTGTCTAGTGGCAGCGAGTCGGACCACAGTGAGGGCAGCGTGGAGAGCAAGGTGTCTGGCCCCGGTCTCCATGAGGGCAAGCAGTGCACCGACTCTGTGTTCAATGGGGGGCCGATCAGGACCcccactgggctgggctggtgcCCACATGGCAGCCTGCTGTCAGAGAGCCGCTCCAGCCTAGCCAGCGAGCCTCCCCACAGCACCGCCCCCCTAGCAGCCCCACCTGAGGACTACGACACAGACCACAACCGACCCTCCTCTATGCACCTGACAGTACTGGATAGATTTGAGCAATTTGGGACAGATACCAAGTGGGGcacctgttttctctctccttcccgtgTTGCGTTCCCAACAATAATATTTCTAAATGCAGAATAAATATGTGCACACCTACTAAGACGCTGAGCTCATGAACATCATTAGATGTTGATGGTGCTGAGTAGCTTCCCAGCCATGTGGGCCTACATCAGACTAGAGGAAACCTGAACACGAGTGTTTACTGAACTGGACCCCCTTAGCCCACTGGCAAACTGAGTAAAACTCTTGT

Function

GO: NA

KEGG:

id description
K19939 RPH3AL; Rab effector Noc2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1227728 lncRNA downstream 45265 46555495 ~ 46555908 (-) True G1078563
TU1227716 lncRNA downstream 71295 46529660 ~ 46529878 (-) True G1078551
TU1227708 lncRNA downstream 81969 46518987 ~ 46519204 (-) True G1078543
TU1227525 lncRNA downstream 269055 46315574 ~ 46332118 (-) True G1078363
TU1227547 lncRNA downstream 295453 46305470 ~ 46305720 (-) True G1078384
TU1227828 lncRNA upstream 6186 46695767 ~ 46730583 (-) True G1078661
TU1227899 lncRNA upstream 81648 46771229 ~ 46771500 (-) True G1078721
TU1227906 lncRNA upstream 89768 46779349 ~ 46779596 (-) True G1078728
TU1227914 lncRNA upstream 96707 46786288 ~ 46786517 (-) True G1078736
TU1227920 lncRNA upstream 99408 46788989 ~ 46789214 (-) True G1078742
XM_021623936.2 mRNA downstream 85333 46382502 ~ 46515840 (-) False LOC110537698
XR_005035334.1 mRNA downstream 238714 46362328 ~ 46362459 (-) True LOC118937925
XM_021623934.2 mRNA downstream 257707 46322347 ~ 46343466 (-) True LOC110537697
XM_021623931.2 mRNA downstream 357195 46241530 ~ 46243978 (-) False foxr1
XM_021623937.2 mRNA upstream 221876 46911457 ~ 47030437 (-) False LOC110537699
XM_021623939.2 mRNA upstream 221876 46911457 ~ 47297035 (-) True LOC110537699
XM_036937662.1 mRNA upstream 937075 47626656 ~ 47658364 (-) False LOC110537700
XM_021623940.2 mRNA upstream 937075 47626656 ~ 47658365 (-) True LOC110537700
XM_021623949.2 mRNA upstream 973463 47663044 ~ 47699551 (-) False LOC110537701
TU1227478 other downstream 395085 46202604 ~ 46206088 (-) True G1078323
TU1225874 other downstream 1447836 45133852 ~ 45153337 (-) True gria4b
TU1225480 other downstream 2000285 44546519 ~ 44600888 (-) False LOC110537661
TU1225479 other downstream 2000285 44580758 ~ 44600888 (-) True LOC110537661
TU1225419 other downstream 2145903 44454648 ~ 44455270 (-) True G1076460
TU1227962 other upstream 126862 46816443 ~ 46817065 (-) True G1078783
TU1229609 other upstream 1224970 47914551 ~ 47922446 (-) True LOC110537706
TU1230355 other upstream 1728840 48418421 ~ 48418884 (-) True G1081055
TU1230892 other upstream 2211827 48901408 ~ 48905274 (-) True G1081571
TU1231158 other upstream 2298431 48988012 ~ 48988353 (-) True G1081813

Expression Profile