RNA id: XM_021623937.2


Basic Information

Item Value
RNA id XM_021623937.2
length 5868
RNA type mRNA
GC content 0.50
exon number 9
gene id LOC110537699
representative False

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 46911457 ~ 47297035 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tctgCCTCACACAAACACGAAAGCCTCTTCCTGAACATGTCCAGTGGGAGAGGATAAATCGAGCtgaacagtattttttttttacgagtgtgtgtgtggtgcaatAGTCCTTTGAGGCCTGTGTGTCTTAACGCTGTCTGGGAGCTCAAATGTTGATTATAGACTGAGGCTAGGTGTGGCGAGACAGGGCGGTGTCAAGGCTTTGTCTACAGTATTAAACCCGGGCTTGCGAAGAGGGGTTTGGTCTATCAGGGACAGCTGCCAGATTGAAGCTACATGTGTGGACTGGATTCAAAGAGCTTCTGTGGGTCTATGCTGTGGACCACGACTGCACCAAAGGGAATATAAGCACAAGTTCAAGAACTTCTGTTGATCCCCCACAGCTGTGTGCTGCAGCGCAAGCAAGGGAACCACCAGGAATCTGTTCTAGTACTGCAAATATCTGAGGAGATTTATGAGAGAAACGTGGAGTTTTTTTCCCTGGCAATCTGTTAACTTGGTGACTGCAAACTCTCTACTGATGATTGGATATACTCTTTTGAAGGGCTATTTGAGGACATATACTTTCAATGCCAGGCGATTTGGAATATGGGACTTTTAATCTCTGATTTGGTCTGTCTGGAAAGGCTTTGGCACATTTATTTCATGTTCTTGGTACTACTGATAACATTTGCAGGGAAAGTATCCCCGACTAGCTCAGATGCTCTTCTGAGCTCTTCGGCAGTCACCCCCACCCCTCCGGACATCTACCTGCCCGCCACCTTCAAGCTTTCCAACGCCCAGCTGGCCTTCTTCCTGCGAGAGACCAGGTCCTCGGGCCAAAGCAGCGGTAGCCCCGCCAACAAACACCCTCTCCAGCGTTCCGAGAGCTTTGTGGTCTTCCAGACCAAGGAGTTTCCCTCCGTTAACATAACCTTTGGCCCGTTCACCCAGGACCAGAGCCTATCCAAGGACCTcctccagccctccagccctCTGGACATCCTCGGGCGGCTAACGGTCAACTGGAAGGTCCGGGCCTTCATCGTCCAGTCGAGGGTGTTATCTAGCAACCCTGTGGTCCAGGTGCTCTTCTACATCGCCGGTCGCGACTGGGATGACTTCAAGGTCCAGGACAAGCTGCCCTGCGTCAGGCTCCACGGCTTCCGGGATGTGCGCGAGATCAAGACGTCATGCCGTCTCCGGGGGAACCTTGCCCAGTGCTTGGCCACGCTGGAGTTGCCCCCCACCTGGTTCAACACCAATGTGGCCCCCCTGGGACGCAGGAAAAGCTCCAGTGACAGCCTGGAGCTGAGCGGGGAATCCCTCCAGGCCGAGCTGTACTACACCCTCCATGACCCGGACAGCGGAGGGGAGTGCGGCGAGAACTCAGGCCGCAGAGGAGGATCACGGGGCGAGCCTCCCTCTCAACATCCCCTCCTCCGCATTGGTAGCATCAGCCTGTACCATTCCAGCCAGAAGCAGCTGGTGGTGGACAAGCAGCTGGATAAGAACATGTTCCTGAGGTTGCCTGAGAAGTCGCTGAAACCAGGAGAGACCCTCAACATCTTCCTCTACCTGGTGCCCAATTCCACAGTGGAGCTGTTCACCCTCAAGGTCAAGGCAAAGAAAGGGGTGAATCTTCTGCAAACCAAGTCAAAGAATGCCCAGTGGACTGTGGACTGGGAGGTGCAGTCCGGGGCGAAGCATTCCATCACCACCATCAACGTGAACAAGAACAAAGGAGTACAAGCCGGGGATGCGCTGGCCAATATCGAGGTGATGCAACTGGACTTTGAGATGGAGAACTTCACCAGCCAATCAGTCACCAGGAGGATCAACTGGAACATCGACTACCGGGGACAGAACCCGCCTCCGGACTCAGAGAAGGTGGTGACTGAGTTGACCGTGGTGCAGAAGGACATTCAGGCTATCATCCCACTCTCCATGGACACCGAAATCATTAACACTGCGATACTGACTGGCCGAACCGTGGCCATTCCCGTGAAAGTGGTCTCCATTGAAATGAGTGGAGTCGTGACTGATGTATCATCCTTCGTAGAGTGCAAGTCCTCTAACGAAGACATTGTGAAGGTGTCCATGAATTGTGACTATGTGTTTGTGAACGGGAAAGAGACACGGGGCTCCATGAATGCCCGGGTCATCTTCAGCTATGAGCACCTCAGTGCCCCCCTGGAGCTGACCGTGTGGGTGCCCAAACTCCCCCTCCAAGTGGAACTGTCCGACAGCAACCTGAGCTTCATCAAGGGCTGGAGGGTACCCATTCTTCCTGACCGCAGGAGCGCCAGAGACAGTGATGTGGATGACGACGAGGACGACCGGCGAGTGAGTCGGGGCTGCACCCTGCAGTACCAGCGCACCCTGGTCAAGGTCCTGACCCAGTTCCACACCACCTCCACCGAGGGCACTGACCAGGTTATCACCATGCTGGGGCCCGACTGGCAGGTGGATGTGACCGACCTGGTGCAAGACTCGCTGAAAGTGGTCGACCCCAGGATAGCTGAGCTGGTGGACCGCACTGTGCTGGTGGGCCTGGAGCTGGGGTCCACTGTACTGAAGGTGGAGTCTCCACTCGCCGTGgaggccatgttgggagagacgCTGTTTTCCGTCACCGACGAGAAAGTCTCCATCTTGGAACTTCGCGTCCATGCTATCTCCGGACTTGCTCTGTCAATACAGCCCAGCCCTGGCAACAGTCACACTATGGTTGCCAAGGCAACTGGCCTGCAGACACTTACTGCACCAAAGCAGGAGGCCAGCTTGTCCATCTGGATTTACTACAGCGACAGCACCGCATTGCCTCTGACCTTCTTCGACCCCAAGGACTACAATCTCAACGCTTCAACGTTGAACGACAAGGTGGTGTATGTATCCCAGGAGCCTCAGCAGCGCTGGCCGGTGGTGGTGGCAGAGGGCGAGGGCTCCGGGGAGATTGTGCGCATGGAGATGACCATCTGTGAGGCCTGTCAGAAGACCAAGCGCAAAAGCATCATCGCTTCGGCCCCTGTGTACGTGAAAGTCCGCTTCGGACCGGAGGAAGACTCAGAGGAGGAAATGGAGATTGAAATCGAGCCAGCCCGTGTCACCAGGCAGCCAGTGGTGGACTCCAACATCGGTGGTGGAGGCTTCGAGCCGTCCAACGAGCAGCCGGCGAGCGTTCCCATCGACTACACCAACTTTCCGACCATCAGCAACCAAGAGAGGCCCactgagggagaggaagaggaggaagacgatGACTTCATCCACGCACCCCGCAGCATGACCGACCTGGAGATCGGCATGTACGCCCTACTGGGCGTCTTCTGCCTTGCCATCCTGGTCTTCCTCATCAACTGCATCGTGTTCGTCCTCAAGTACCGCCACAAGAGAATCCCCCCCGAGGGCCAAGCCAACATGGACCATTCCCACCACTGGGTTTTTTTAGGGAATGGACAGCCCTTGAGGGCCCAGAGTGACCTTTCACCCCAGACGGTGGAGAACCCTATCAACCCCATAGAGGGGTTACAGACATGTTGCCACGGGGACCACCACAGCAGCGGCAGCTCCCAGACCAGCGTTCAAAGCCAGGTCCATGGGAGGGGCGATGGCAGCTCCGGGGGCTCCACCAAGGAGCACGGCGAGGAGGCCAGCTCGCCCACATCCAAGCGCAAGCGTGTCAAGTTCACCACCTTCACCACGCTCCCCACAGAAGACATGCCCTACAACTCTATCCCCATCGCAGATGAAGAGGACATTCAGTGGGTCTGCCAGGACATGGGCTTTCAGGACCCAGAGGAATTGCATGACTACATGCGCAGGATAAAGGAAATAGCCTGAAGGGGCGGCTGTTAAGAAGCCTTGGAGCTTTCTAAAAATACTTTCCTTTCTATTTTTCTCTTTTTCACTTTAGTGACAACTTTTCACAAACAAAAACCATGGCCAACTACTCTTCTGTTTTTCTTTGGGTTCTTTTTTGTTCTTTGCACAGTGCTGTTTCCCGTACACACTCACTTTTTTTGGAAGTCGTAAAAACAATTGGAAAGTCAAAGACTGGACTAAAGGATTTTAAACGCTAGTGAAATGGCTTTGTGTGGATGTCCTTTCTACAGAGGTAGGGGAGTACACTCTCaaatggatttagaagcttcagTCATGAGCACTGTTTTGGAGGATGGATTTGAAGTTCTCTGTTACTGAGGGTTAGTTAGCAGACAGGAGTGTTTTTAGCGGGACGGGTTGGGTCTTGGCTCTGTGTTTGTCGGTTTATCCAAACTCCAAGTACCTTTTCCAACAAAGAGGCCTTTGATGTGCAGATTACATTTCAAAGAAACCGTTTTTGGGACGCATGGTTTTAGGCCAACATGGGACAACATGATGGACAACTAATTGTCAAAGACGCTCATTAAAAACCATGTTAcggatttattttttatcttaccAAAGTAGGAAAGCATTCGTCAATGGCAAAACCTCCTTCTTTGTTCTTGGTACAGCACATACTATGGTTTCATTCAATGTCATTACCGTACATTTTACTAAATTTCATACATAGTCCAAGTCAGTACCCTACTACTATCCTGATTAAGTCTAATGCCTTAGAATGGGTTATAGAATGGGTTTCACTGATCACTACTGATTTCAATGCTGACACCCTTGTTTGCACACTTTGGGTTAAGGGGCAGTGGGGGGGCAATTATCCAAAACGCTACAACTGGTCAAAGGTTTAGTTATATTGGAAAAGACAAGAGCTTGTACTTATATCATGAAGTAAACTATCTCCAAAATTCTTTGCATGAAAGGAGATACTGAGGCACAATCAGCAATTTTCAAAATTTTTGGATGTTTCAATTTGTAAATTATTATCTAATCATGCCTAGACAATACTAAAGGACATATGTTATCATGCATTACATGCATGCCGTGCCAGACCTGCCTACTACATCCCTTCCTCATATGTACATACCATTGGCCAGCTGAGGTCCTCTTCAGCAACAACATTACATTGAACTAGTTATCAGGCAGAAAAGGGGGGAAGTGATGTGTGCTGGGAACATGTTGGCCCATCATTGTAACCATAGTGTTTCCTCTGCAGTTTTTACTATGATATCCCACTGTACACCGAGGCCCTAACAATTACAATGAAAAAACTCTCATCCGGACAAAAGATTTTGCAGCAGAAATCATTCCCtttccttttttttcttcttctttttaaatTATCGTCAACTCGTGTAATCATGCTCCCATAGAAATTAAGTTAATTCTTTAAATgttttggatttgtgtgtattgttttgtattgttcggtattactgcactgttggagctagaaacataagcatttcgctgcacctgcgataacgtctgcaaaatatgtgtacgcgaccaataaaatttgatttgatttgatttgacaccaaCTCATTTGTACGGAGTCAGAATATTTGCGTTGCCAATTTCCAATGAACCTAAACACATAATGAGAGGTTCTATGTTTGGTCCAAAATATGTCAGTAATAAAGCATGGATGCTGCATACGAGCTGGTCATGATTGTCACAGGAGCCAAGCGCGCCGGTACTGACACATTGTGCCATTGTTATGGTGGTGGCACCTAATAAGTTTCTCAGAATTGACTTGGTTTGATGAAATCTTGATTTTGATGTTAGGAGTTTTGGTTAGTGTACCTGCACAAATTAGAATGACTGTAAATTATGAATGCAATCAGATGCCATTTGTAGGTTTGGTTGCGTAGAGGCATTGGCTAGTGTGACGAATTTTAAATCGCTGGGTGGGATTCTTTTAAGGTAAGTAATGTTCTTTCGTGCTGATCTGATGATTTGCCTAGTTCTTTTCAGGAGTAATGAAAAATAAACTAAATGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1228360 lncRNA downstream 37121 46873979 ~ 46874336 (-) True G1079161
TU1228356 lncRNA downstream 41594 46869649 ~ 46869863 (-) True G1079157
TU1227975 lncRNA downstream 85779 46825465 ~ 46825678 (-) True G1078796
TU1227941 lncRNA downstream 109255 46801936 ~ 46802202 (-) True G1078762
TU1227937 lncRNA downstream 113304 46797417 ~ 46798153 (-) True G1078758
TU1228551 lncRNA upstream 111085 47141522 ~ 47142714 (-) True G1079345
TU1228596 lncRNA upstream 160345 47190782 ~ 47191254 (-) True G1079390
TU1228597 lncRNA upstream 160893 47191330 ~ 47191558 (-) True G1079391
TU1228717 lncRNA upstream 316200 47346637 ~ 47356554 (-) True G1079506
TU1228724 lncRNA upstream 327981 47358418 ~ 47358646 (-) True G1079513
XM_036937660.1 mRNA downstream 221876 46600848 ~ 46689581 (-) False LOC110537698
XM_036937661.1 mRNA downstream 221876 46601173 ~ 46689581 (-) True LOC110537698
XM_021623935.2 mRNA downstream 221877 46382502 ~ 46689580 (-) False LOC110537698
XM_036937658.1 mRNA downstream 275886 46382502 ~ 46635571 (-) False LOC110537698
XM_021623936.2 mRNA downstream 395617 46382502 ~ 46515840 (-) False LOC110537698
XM_036937662.1 mRNA upstream 596219 47626656 ~ 47658364 (-) False LOC110537700
XM_021623940.2 mRNA upstream 596219 47626656 ~ 47658365 (-) True LOC110537700
XM_021623949.2 mRNA upstream 632607 47663044 ~ 47699551 (-) False LOC110537701
XM_021623946.2 mRNA upstream 632607 47663044 ~ 47708268 (-) False LOC110537701
XM_021623942.2 mRNA upstream 632607 47663044 ~ 47711070 (-) False LOC110537701
TU1227962 other downstream 94392 46816443 ~ 46817065 (-) True G1078783
TU1227478 other downstream 705369 46202604 ~ 46206088 (-) True G1078323
TU1225874 other downstream 1758120 45133852 ~ 45153337 (-) True gria4b
TU1225480 other downstream 2310569 44546519 ~ 44600888 (-) False LOC110537661
TU1225479 other downstream 2310569 44580758 ~ 44600888 (-) True LOC110537661
TU1229609 other upstream 884114 47914551 ~ 47922446 (-) True LOC110537706
TU1230355 other upstream 1387984 48418421 ~ 48418884 (-) True G1081055
TU1230892 other upstream 1870971 48901408 ~ 48905274 (-) True G1081571
TU1231158 other upstream 1957575 48988012 ~ 48988353 (-) True G1081813
TU1231174 other upstream 1978912 49009349 ~ 49010152 (-) True G1081829

Expression Profile