RNA id: XM_021623940.2


Basic Information

Item Value
RNA id XM_021623940.2
length 2656
RNA type mRNA
GC content 0.52
exon number 8
gene id LOC110537700
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 47626656 ~ 47658365 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAACAGTAATTGGGGGCGTGGTCATGTAAAGCTATGCCTCGCCGTGTGTATCTATTATTGGGTTTGAATGGGGAAGGccttctattcattctatttctgtggTTCAGACAGATTGGTGGCTAGCCAGTTTGGGTTGGTATGTAATGTATGATTAGCATAGATACATACATTTCCGAATCGAAGGATTCATTGCTTCGCCAAAATGTTTTTTATACGTTTGCTTGAACGTTTACCGCCTGACCTGGAATCAGTCGTATTGTAAAAATGAGGCATTTTAAGAATCCAAGCTAGATGGCTAGCTAGCTTTCCATCTTGTAAACTCAATATGCTTTGCTAGCGTAACGTTAGCCAATTTGCTAGCTAACCGTTAGCGGACTAATCGTGTAAACGTTAGTTATTTTggtttgctagctaacgttacattttATTGATGGGATAACGTTAGCTGGCAAGGTGTCCTGTAGTTTGTCCATCTGACTTCCTAAACCTATCTAACGTTAGTTTACCAGCCTCCGCTTTATTCCCTTAACTATCGTTTCGTTTACTGGATTTGACGTAACATTAGCTGGCACTGGCTAGTAGCTGCAAGATATGGCCACTGCCTCTAGCTCCTGTGTGGGGAGAAATGTGTCTAGAAATGGACCCTCTGTCTCGACCCCGACCTCGGGAGCACCTGGACAATCACAGCCTATGGTCGTTGTATGGGAATGGCAGGATGATCTTGGCGTCTGGCTACCGTACAGCGGCCAGGTGAGCGGCTACATAGAACAATGTTTCTCTTCTCCGCGGGGACACAGGAGTGGGGGTCCTGGCTCCACCAGTATCTGGCTCGGACAATCAGATCCCAGTTTGTCGCCTTATCTTATAGACATACCAAGCTTGAAGCAGTTCCGCCAAGATACAGGGAAAACGCGGTCTGTACGCCGTCAGTTGTTTGCCCAGTCCTCAGGCTTGGGTAGCGGAGTATATTGGGAGTGGGTGAATGACGAAGGAGGATGGACTCCATACGAGACTCGCACTTCTATCCTACTAGAACACAGCTACCAGGCACGGCAGGCCACGGCGGACATTGTCTCACACGGCTATAACTACATAGTGGACCTCACGGCGCTGGCCCAGGTCAACAAGGCCACGGGCTACCGGCGACAGGTACGACGGCAGGGTAACCTCCCCTACCCACTGGCATCTGGTGCATCCGTCATACACTCGACCCCGGCCTGCTCCTGCCAGCAGTGTCTGAGCCACAGCAGCACTGGCCCCATGTCCAGCCGCTCGCGCCATTCCTTCTCGTCGGGGCAGCTGAGCCGGCCTAGCCTCCAGGTCCCTAGCAGGGCGACTGGAGCTCACCCCACCTCAGTGTACTCACCCTACCCCAGGAGGCCTCTTTCTGTGGGGGGAATGGCGTGGGGAGGCCCCTGGCCACTGGCACCCTCCGCTAGTCAACTCCCTGGAGCTCAACTGGCCTTGTCCACCAGTGCCAATGGCTTAAGTATCCCCACCATCCCTGTGCAACTGAATGGATCCACCAGTGTGAGCTCAGCCCTGGCAGTCCCGGCCCAGAAACCAGAGGATGTCATTCACCGCTACATGGAGGAAGTGGCCTCTGCTCAAGACGAGGACTGCATCATCTGTATGGACCGGCTGTCTTGTCCGTCGGATTATGACGTGGCGTCTGAGGGAGCCCAGTCCATCCAGCCTGGCGCCGTGGGCAAGTTCAAGTGTGGACACACCCTCCACATGCTCTGCATGCTGGCCATGTACAACAATGGTACCAAGGATGGCAGCCTCCAGTGCCCCTCATGCAAGACAATCTATGGGGAGAAGACTGGGACCCAGCCCAAGGGGAAGATGGAGATCTATAGTATCTCCCAGTCCCTCCCTGGCCACCCTGACTGTGGAACTATCCAGATAATTTACAGCATCACCCATGggatacagGGTCCAGAGCACCCTAATCCCGGGCAGTCGTACACCTCTAGAGGCTTCCCTCGCTTCTGCTTCCTCCCAGACAACAAAAAGGGCAGAAAGGTGCTGGAGCTGCTGAAGGTGGCATGGACACGGCGCCTCATTTTTACGGTGGGAACGTCCAGCACCACGGGCGAGCCCGATACGGTGGTGTGGAACGAGATCCACCACAAGACTGAGATGATGTCCAACATGTCGGGTCATGGCTACCCGGACCCCAACTACCTGGACAACGTGCTGTCCGAGCTGGCCTCCCAGGGGGTGACCGATGACTGCCTCCTCAGACAGGAGGACCCCAGCCAGGGAGGAGCGTCAAACTCTAGACTGTGAACTGGTTATGGCTAGGGAGCATCCGACTGTGAAACTGACCGTGAATCACTTTCCTCGTAATGTCGCAACTTCAACATAGAGAACATAAGGGATAAACCAAGTATTCACATTCCCACCTGGAAGTGTTTTTATTAGGTATTCAATGCAAAGCGTATGTCTGAGTGCAGTGTGCCGAATACTACACATACTGATAATGTGGGGTTTGACTTGGACTTTATTAGCTGCAGTAGTGCTCCATTAGCTCTTGGTTTAGTCACCTAGGCTGTGTCTCAAACGGCACCCTGTATACATCCCTATATTTGTAGtgctatatatatttatatatgtacacacacacagtgggcaaaaaagtatttagtca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1229372 lncRNA downstream 70245 47556123 ~ 47556411 (-) True G1080126
TU1229371 lncRNA downstream 71861 47554568 ~ 47554795 (-) True G1080125
TU1229367 lncRNA downstream 73474 47552904 ~ 47553182 (-) True G1080121
TU1229363 lncRNA downstream 79300 47547097 ~ 47547356 (-) True G1080117
TU1229361 lncRNA downstream 80455 47545885 ~ 47546201 (-) True G1080115
TU1229447 lncRNA upstream 54001 47712366 ~ 47719560 (-) True LOC110537702
TU1229509 lncRNA upstream 136106 47794471 ~ 47801610 (-) True G1080244
TU1229513 lncRNA upstream 171756 47830121 ~ 47831801 (-) True G1080246
TU1229565 lncRNA upstream 204658 47863023 ~ 47863384 (-) True G1080295
TU1229566 lncRNA upstream 205306 47863671 ~ 47863989 (-) True G1080296
XM_021623939.2 mRNA downstream 329621 46911457 ~ 47297035 (-) True LOC110537699
XM_021623937.2 mRNA downstream 596219 46911457 ~ 47030437 (-) False LOC110537699
XM_036937660.1 mRNA downstream 937075 46600848 ~ 46689581 (-) False LOC110537698
XM_036937661.1 mRNA downstream 937075 46601173 ~ 46689581 (-) True LOC110537698
XM_021623935.2 mRNA downstream 937076 46382502 ~ 46689580 (-) False LOC110537698
XM_021623949.2 mRNA upstream 4679 47663044 ~ 47699551 (-) False LOC110537701
XM_021623946.2 mRNA upstream 4679 47663044 ~ 47708268 (-) False LOC110537701
XM_021623942.2 mRNA upstream 4679 47663044 ~ 47711070 (-) False LOC110537701
XM_021623944.2 mRNA upstream 4679 47663044 ~ 47711070 (-) False LOC110537701
XM_021623947.2 mRNA upstream 4679 47663044 ~ 47711070 (-) False LOC110537701
TU1227962 other downstream 809591 46816443 ~ 46817065 (-) True G1078783
TU1227478 other downstream 1420568 46202604 ~ 46206088 (-) True G1078323
TU1225874 other downstream 2473319 45133852 ~ 45153337 (-) True gria4b
TU1225480 other downstream 3025768 44546519 ~ 44600888 (-) False LOC110537661
TU1229609 other upstream 256186 47914551 ~ 47922446 (-) True LOC110537706
TU1230355 other upstream 760056 48418421 ~ 48418884 (-) True G1081055
TU1230892 other upstream 1243043 48901408 ~ 48905274 (-) True G1081571
TU1231158 other upstream 1329647 48988012 ~ 48988353 (-) True G1081813
TU1231174 other upstream 1350984 49009349 ~ 49010152 (-) True G1081829

Expression Profile