RNA id: XM_021623945.2


Basic Information

Item Value
RNA id XM_021623945.2
length 4114
RNA type mRNA
GC content 0.49
exon number 27
gene id LOC110537701
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 47663044 ~ 47711376 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTCACCAAGGATATGAAGTGAGCTAGATCACATGCAAAGGGGCAGTTTGGGCACTGCTCAGGTGGCTGACCAAAATAGTTCACAATTCAACTCTTGATGATATACAGAGAAGAGGAATGGCACAGATGAGGAAGTCTGGATGTGACGGGATAAGGACTAACTCCCGGACTGAGCTGCGGGTCCCACAGGTGTCGGCCAGACAGGAGATCCTCACCAGCCTAGTGTCTGCGCTGGACTCAGTGTGTACAGCCATGTCAAAGCTCAATGCCGAAGTGGCTTGCGTCACAGTGCACGAGGACAGCGTGATCGCCGTGGGAACAGAAAAGGGAAGAGCTTTCCTCAACTCACGGAGGGAAATACAAACAGACTTCCACAAGTTTTGCAGGGTGCACTGTCTGCAAGGGCTGACCACAGTGAATGCCCATGCCAAAGTCCAGGAGAGTGAATTCAGCAAGCTTGGTAAAGAGGGCGGGCACGGCAAACAAAGGGCGTCAACAGATGCCCACTCTAACATCTTTGTCTTGAGGAAAATGGTGGAGGAAGTCTTCAGTGTGCTTTACAGTGAGGCTGTTGGGAAGAGCAATAGCCTAGTCCCTGTGCCTTATGAGTGGATCCTGAAGGACCCCAGCTCTGTGGTGGCCCACGGCCTGCCTGAGGGGATCGCCCTGAGGAAACCTGCTGAGTATAACACCAAGACCTTAATGAAGATCCTGGAGCAGAGCAACCGCATCTACTTCACTGTCAAAAGGGGAACAGAGGAGCCTTTGCGCGAGACTAAGTCCAGTGTCAGCAACCACAACTCCTTCTCGGGCACCACCAAGATCCTAGCCAAACACGGCCCATCCTCCAAGCCTGCCTCCACCGCCCAGGAATTGTCCACCGCATCAGTCTCGGCCAGCAACTCCATGCTCTCCAGCTTCCTGTATGGCATGCCTATGTCCTCCCTGCCGCACCCTGACGGCAAGCTGGACCTCAAGCCCACGTCCCTCCTCAACCTGGACAAAGACCGCCTGGGGGCCTGGGTGGCAGGGGCGGAGAAAGGGACGGCCGCCAAAGACAGTTCCGACAATGTACTCCAAGGGGAGTTGGGCCAGAGTCCTCCAAGCATCCACGTCTCCAAGCGCCTCCTGTTTTCCCTCGTACATGAGAAGTCAGAAAAATGGGATTCGTTCATTCGCGAGACAGAGGACATCAACACGCTGAGAGAATGTGTGCAGATCCTGTTCAACAGTCGCTATGCGGAGGCCCTGGGCTTGGACCACATGGTTCCAGTGCCGTACCGGAAGATTGCCTGCGACCCAGAGGCTATGGAGATAATTGGCATCCCAGACAAAATCCCCTTCAAGAGGCCCTGTACCTACGGAGTACCCAAACTCAAACGCATCCTGGAGGAGCGCCACGGGGTCCGCTTTGTAGTGAAAAGAATGTTTGACGAAAGGATTTTCACAGCTGCTGGTAAGGTGGCCAAGGAGGAGGGGAAGCATGACATAAACTCCACCTTTGAGGACGGTTTCCCTGACATCCTCCAGGTCCCGTCGGCTGCACTGGAGCTGGTCACCAATCCTCACAGCAGCAGATCTACAAGCTCTTGTGTGAGTCCATTGGCTGACTGCGAAGCAGGGCCTTCAGGAGATTGTATTCCCTTGAAAAAGATTAAAACGGAACCCCCAGATGGGGAAATCATCCAGGTGACTGTACCAGaTGCCAGTGTTTCAGTGGAGGAGCCAAGTGAGCCTCGGCCTGACCCAGTTGCAGCAGCAGTGTTGGCAGTGGCCACCCCGGCACAGGCTGCTCCCTGCCGCCCTTTGGAGACCCACGCAGCTGAAGCACTTTCATCTAAACCAGCTTCTCAAGGCCTCAGAAGATCTTCTGAAGGAAATCTAGCTGAGGACATAGGTGAAATTATCCTCCAGCTTCGGAGGCAAGTGGAAAGCCTATTCAGCACTAAGTATGCCGAGGCCCTTGGACTACCTGAGTCTGCAAAGGTGCCCTACTCCAAGTTTCAGATGTACCCAGAGGAGCTGTGTGTCACAGGGCTCCCAGAGGGCATGACTTTCCGTAGGCCCAACTGTTTCGGAGCGGCCAAGCTGCGAAAGATCCTGGCTGTTGGCAGCCAGATCCACTTTGTTATCAAAAGGCCAGAACTGTTAACAGATCTTGTCAAGCTAGAACCGCCTCCACTCCCAGCCTGTGATTCAGACTTTTTTTCCACAGACCTGGACTCCAAAGATGCTTTGTCAGAAGACGTAGGGGCTGCAATGCAGAGACCAAGCTTCCCAGATAGCTTAGAGGCTAAGCTGTCTAGGATCGACCTGGCCAACACCTTGAGAGAGCAGGTCCAGGACCTATTCAACCGGAAGTATGGGGAGGCACTTGGCATCAAATACCCCGTCCAAGTGCCTTACAAGAGGATCAAGAGCAACCCGGGCTCGGTGATCATCGAGGGCCTTCCCCCTGGCATCCCCTTCAGGAAACCCTGTACATTTGGCTCGCAGAACCTGGAGAGGATCCTGGCAGTTGCAGACAAGATCTGCTTCACCATCACCAGACCTTTCCAAGGACTCATCCCTAAACCAGCACCTCGTCGGATCACTTTATTGAAGAAGGCCTACGCCTCAATAAGCGATGAGGAAGAGGTCAACTGTATCGGTGAGAAAGTGATACTTCGCGAGCAAGTGAAAGAACTCTTCAACCAGAAATATGGTGATGCTTTGGGCCTGGACCACTCTGTCCTGGTCCCATACAAGCTGATCCGTGCCAGTCCCGAGTCTGTGGAGGTTAGTGGCCTTCCGGACGATATTCGCTTCAGAAATCCCAACACTTATGACTTAGTCCGCCTGGAAAAGATTCTTCAAGCCCGAGATGagatcaacatcaacatcaaaagCCAGCTACAGCCTTTTGCAGAAATATGCACCCAAACATGTAACACAGAAGGGAAAGAGGTTTCTACCAATCGACGCAAACGCAAAAGAGTCCTGGAGAGCAGCCGGGTGTCCTTACCCTCCGAGTCAGGGGTATCAACCAATCAGATTCCAGTGATGCAATGGCCCATGTACATGGTGGACTACAGTGGATTGAATGTGCAAGTCCATGGGAAGGTGAAATACTAGTAGAGGAAAAATATGCTATGCTACAGGAAGAGAATAGACATGAGAGGACTTTATCAAAGCTGTACTTATAACCACATCTCCAAGTTTCAGCTTTGCGCGTGTGCTGTTGCTTAAATACTCTTCTGACTGAAAATATAGGtttggatgtgtgttttggaatGGTGGCGATTGCCAATATTAGGTGGCTTGGGTGGAAAGGTGAGGAGGAACTATAGAATCTGTGCATAATTTGTTGCAGGATGCTTTCTTTTATTTTGTCTTCCCCCACAAGTCCTGATGGGCTTTCTTGATACACCTATTTCAAAGGTGCTTAAAAAAAAACGCTATTCAAAAACCGACTGGGGTTATGTTATGGCACTAAGCTTATGGAACTCACAATTACTGAAGTACTCACCCTTTTAGATCATTTTTAACAGATCCAACATGGAGACTTTCGTTACGGGGTGTAACTACGGCACAAACGTATTGGATCAATCTGGTTTTACAACATTCAGATatttgtatgattatttatttatttattttgaagatgaaaaaaacaaacatgtgcaGGGATGTAAATTACAATGTTCAGTAATCTAAGTACTGAATCAAATGTCTCTACAACGctaactactactgtatgtaACTCAAAAAGTATATCAATTGAAATATGTTTGCCTTCAGGTGTGCGTACCGGTATTCTCCGTGGTAGGAATAACCCAAGGTGATAGCACTATATCTAAGAACAATTTTCACATTTTGTATAACTACATGCCTTTTCTTTTATCACAGTACTTGTACATGGAGTTGAGATTTCTCAACTCGGCTTTTCTTATGTTTGTTCCACATCTGCGCTAAGTTGAAATGTCTCATTAAGTCAACATGAATGTAACGTGTGTAAAAGAAAGAATGGTCTGTGTTATCCTGTAACGATTGTCTCTGGATTCACCAGTATTTATATGCTGTACCTTAATGCCATTTAGGCCTTTGAAATAAAATGTGTTGCCTTGCACTTTCA

Function

GO: NA

KEGG:

id description
K03121 TFII-I, GTF2I; transcription initiation factor TFII-I

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1229374 lncRNA downstream 31447 47558586 ~ 47631597 (-) True G1080128
TU1229372 lncRNA downstream 106633 47556123 ~ 47556411 (-) True G1080126
TU1229371 lncRNA downstream 108249 47554568 ~ 47554795 (-) True G1080125
TU1229367 lncRNA downstream 109862 47552904 ~ 47553182 (-) True G1080121
TU1229363 lncRNA downstream 115688 47547097 ~ 47547356 (-) True G1080117
TU1229447 lncRNA upstream 990 47712366 ~ 47719560 (-) True LOC110537702
TU1229509 lncRNA upstream 83095 47794471 ~ 47801610 (-) True G1080244
TU1229513 lncRNA upstream 118745 47830121 ~ 47831801 (-) True G1080246
TU1229565 lncRNA upstream 151647 47863023 ~ 47863384 (-) True G1080295
TU1229566 lncRNA upstream 152295 47863671 ~ 47863989 (-) True G1080296
XM_021623940.2 mRNA downstream 4679 47626656 ~ 47658365 (-) True LOC110537700
XM_036937662.1 mRNA downstream 4680 47626656 ~ 47658364 (-) False LOC110537700
XM_021623939.2 mRNA downstream 366009 46911457 ~ 47297035 (-) True LOC110537699
XM_021623937.2 mRNA downstream 632607 46911457 ~ 47030437 (-) False LOC110537699
XM_036937661.1 mRNA downstream 973463 46601173 ~ 46689581 (-) True LOC110537698
XM_021623954.2 mRNA upstream 1634 47713010 ~ 47791026 (-) False LOC110537702
XM_021623952.2 mRNA upstream 1634 47713010 ~ 47791028 (-) False LOC110537702
XM_021623953.2 mRNA upstream 1634 47713010 ~ 47791028 (-) False LOC110537702
XM_021623950.2 mRNA upstream 1634 47713010 ~ 47791029 (-) False LOC110537702
XM_036937667.1 mRNA upstream 1634 47713010 ~ 47791030 (-) False LOC110537702
TU1227962 other downstream 845979 46816443 ~ 46817065 (-) True G1078783
TU1227478 other downstream 1456956 46202604 ~ 46206088 (-) True G1078323
TU1225874 other downstream 2509707 45133852 ~ 45153337 (-) True gria4b
TU1225480 other downstream 3062156 44546519 ~ 44600888 (-) False LOC110537661
TU1229609 other upstream 203175 47914551 ~ 47922446 (-) True LOC110537706
TU1230355 other upstream 707045 48418421 ~ 48418884 (-) True G1081055
TU1230892 other upstream 1190032 48901408 ~ 48905274 (-) True G1081571
TU1231158 other upstream 1276636 48988012 ~ 48988353 (-) True G1081813
TU1231174 other upstream 1297973 49009349 ~ 49010152 (-) True G1081829

Expression Profile