Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00040366 |
| length | 947 |
| lncRNA type | retained_intron |
| GC content | 0.43 |
| exon number | 2 |
| gene id | XLOC_020336 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007133.7 |
| NCBI id | CM002906.2 |
| chromosome length | 39133080 |
| location | 17531020 ~ 17544141 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0000380 | alternative mRNA splicing, via spliceosome | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:2000815 | regulation of mRNA stability involved in response to oxidative stress | biological_process |
| GO:0071014 | post-mRNA release spliceosomal complex | cellular_component |
| GO:1990904 | ribonucleoprotein complex | cellular_component |
| GO:0005634 | nucleus | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0003676 | nucleic acid binding | molecular_function |
| GO:0003723 | RNA binding | molecular_function |
| GO:0003729 | mRNA binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-030131-6898 | Predicted to enable mRNA binding activity. Predicted to be involved in alternative mRNA splicing, via spliceosome and regulation of mRNA stability involved in response to oxidative stress. Predicted to act upstream of or within mRNA splicing, via spliceosome. Predicted to be part of post-mRNA release spliceosomal complex. Predicted to be active in cytoplasm and nucleus. Orthologous to human HNRNPM (heterogeneous nuclear ribonucleoprotein M). |
| ensembl_id | ENSDART00000142871 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00040363 | lncRNA | upstream | 24986 | 17503508 ~ 17506038 (+) | True | XLOC_020334 |
| TCONS_00042107 | lncRNA | upstream | 719663 | 16810284 ~ 16811361 (+) | True | XLOC_020324 |
| TCONS_00042106 | lncRNA | upstream | 1593756 | 15788139 ~ 15937268 (+) | True | XLOC_020308 |
| TCONS_00040314 | lncRNA | upstream | 1719902 | 15787981 ~ 15811122 (+) | False | XLOC_020308 |
| TCONS_00042105 | lncRNA | upstream | 2170840 | 15358159 ~ 15360184 (+) | True | XLOC_020300 |
| TCONS_00040370 | lncRNA | downstream | 5156 | 17539163 ~ 17541057 (+) | True | XLOC_020336 |
| TCONS_00040373 | lncRNA | downstream | 73746 | 17607753 ~ 17611582 (+) | True | XLOC_020337 |
| TCONS_00040376 | lncRNA | downstream | 250635 | 17784642 ~ 17803402 (+) | True | XLOC_020338 |
| TCONS_00042108 | lncRNA | downstream | 709751 | 18243758 ~ 18304288 (+) | False | XLOC_020344 |
| TCONS_00042109 | lncRNA | downstream | 709829 | 18243836 ~ 18304288 (+) | False | XLOC_020344 |
| TCONS_00040364 | mRNA | upstream | 9731 | 17509422 ~ 17521293 (+) | True | XLOC_020335 |
| TCONS_00040361 | mRNA | upstream | 24181 | 17499905 ~ 17506843 (+) | False | XLOC_020334 |
| TCONS_00040362 | mRNA | upstream | 25231 | 17499917 ~ 17505793 (+) | False | XLOC_020334 |
| TCONS_00040358 | mRNA | upstream | 76567 | 17399124 ~ 17454457 (+) | False | XLOC_020332 |
| TCONS_00040359 | mRNA | upstream | 76567 | 17433968 ~ 17454457 (+) | False | XLOC_020332 |
| TCONS_00040369 | mRNA | downstream | 2982 | 17536989 ~ 17539112 (+) | False | XLOC_020336 |
| TCONS_00040372 | mRNA | downstream | 72856 | 17606863 ~ 17611578 (+) | False | XLOC_020337 |
| TCONS_00040374 | mRNA | downstream | 250407 | 17784414 ~ 17823608 (+) | False | XLOC_020338 |
| TCONS_00040375 | mRNA | downstream | 250550 | 17784557 ~ 17819557 (+) | False | XLOC_020338 |
| TCONS_00040378 | mRNA | downstream | 294260 | 17828267 ~ 17831253 (+) | True | XLOC_020340 |
| TCONS_00040360 | other | upstream | 80758 | 17443345 ~ 17450266 (+) | True | XLOC_020332 |
| TCONS_00040335 | other | upstream | 891599 | 16639310 ~ 16639425 (+) | True | XLOC_020322 |
| TCONS_00040326 | other | upstream | 1227696 | 16302317 ~ 16303328 (+) | True | XLOC_020314 |
| TCONS_00040324 | other | upstream | 1253399 | 16277498 ~ 16277625 (+) | True | XLOC_020313 |
| TCONS_00040312 | other | upstream | 1796181 | 15732967 ~ 15734843 (+) | True | XLOC_020306 |
| TCONS_00040371 | other | downstream | 72581 | 17606588 ~ 17607337 (+) | False | XLOC_020337 |
| TCONS_00040377 | other | downstream | 290452 | 17824459 ~ 17824573 (+) | True | XLOC_020339 |
| TCONS_00040381 | other | downstream | 632592 | 18166599 ~ 18175378 (+) | False | XLOC_020342 |
| TCONS_00040385 | other | downstream | 713285 | 18247292 ~ 18280440 (+) | False | XLOC_020344 |
| TCONS_00040386 | other | downstream | 719151 | 18253158 ~ 18280440 (+) | False | XLOC_020344 |
