RNA id: TU1229447


Basic Information

Item Value
RNA id TU1229447
length 5190
lncRNA type sense_over
GC content 0.42
exon number 4
gene id LOC110537702
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 47712366 ~ 47791030 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

catgtaaagtgttggtcttatgtttcatgagctgaaataaaagatctcagaaattttccatacgcacaaaaaatgtttgccaagataatccatccacctgccacatatggcatatcaagaagctgattaaacagcatgatcattacacagctgcaccttgtgctggggacagtaaaaggccactctaaaatgtgaagttttgtcacacaacaaagtgccacagttttgagggaatgtgcaattggcatggtgactgcaggaatgtccaacaaagctgttgacagagaatttaatgttctaccataagcctcctccaacgtcattttagagaatttggcagtatgttcaATCGGCCTCACAACGACAGTATGGAGTTGTGTGGGAGAGCAGTTTggtgatgtcaacgttgtgaacagagtgccccatggtggcagtggggttatggtatgggcaggcataagctacggacgacaaacacaattgcattttatcgatagcaatttgaatgcacagagatgcagtgatgagatcctgaggccagttgtcgtgccattcatccaccgccatcacctcatgtttcagcatgataatgcatagccccatgtcgtaaggatctgtacacaatttctggaagctgaaaatgtccccgtTTTTCCAAGGCCTGCATACTTaccgtgtacaacagcgtgttccatttCAGCCAATATGgagcacagccattgaagaggattgggacaacatttcacaggacacaatcaatagcctgatcaactttatgcaaaggagatgtgtagcGCTGAATGTGGCAAACGGTGgtaacaccagatactgactggttttctgatacacgcacctacctttttttaagatacctgtgaccagcagatgcatatctgtattcccagtcatgtgaaatccatagtttagggcctaatacatttatttcaaatgactgatttccttatatgaactgtaactcagtaaaatctttgaaattgttgcactttgcgtttatatttttgttcagtgtatatatatttaaagtgCCGACATTGCAGTACTTGTTGGTCCAAACCAAACATTTAACTCTAAATCCTTCTCAAACTTCTTTTTGTCCACCAGCCTTGGAGGGCAAAGTTCGCTTGGGTGAGAAGAAGGGCGATGCCCTGGTCAAGGAGAAGATGCGCCTGGAGGCCGACCTTGAGTGCATGACCAAGAAGTCCCATGATGCATCGGGACAGCTGGTTGTCATTAGCCAGGAGCTACTGAAGAAGGAGAGGTCATTTAATGacgagagaaagagggaacacTATTGATTTTACACCACAGCTCAGTATTTTCCCTTTGAAATATGGAATAAAACATGGCAGCCCACCCAAAGCTACAAGATATAGCTTACATTCATCTGAAGGAGATTAGATGTTTGCTAATGCACTTGTATGAAACTGTCCCCCGTCTTTACACATACAGTATTTTGTGCTAGAGTCATGCATTTTCAAAGACTGACAAAACAGTCGCAACTCGTCTTTGTGATATGCAGTCACTAGACGTATGCTAGACATCTGTTTTATGAGGATCAATCCACCTCAGTTAAGGTAATGGAGAAAATTAGCCTGATTAAAAGTAGGCCTAAAAGGCCTTTTCACCCCTCAAGTCATTGCATTGTCATAGCTGAGAAAGTGTCCCATTCCTCAGTCTAAGGCATTTAGGGAGATTACGCACAGCGCTTAGGCCTGGAAATATAAGCAAACATTTATTGAAAGGACAACAGCACAACATTATGTATCTCAGTGACTCTTAGGGCACCTAAGTTTGCAGTATTTGACTGTGTCAACTGCCTTTCATAGAGAAAAACAAATATGCCATGTATCATAGATAGTTTTGGGTCATTGATAGTGAAACAACCCTGAatctagcctgggtgccagtctctttctgctctcttgccaactctggggaattgtcatgcaaatgacacaattggagttggcaagagcacaatcAGGTCTAGGACCAGGCTACCCTGAATCAGGAAGGCAAGGGTAAATCTTAACGGTACTCTTTGTTGTATCGTCCCCTTGTGTCAGGAGTCTGAACGAGTTAAGGGTGTTACTGCTGGATTCCCCTCGCCACTCGCCCGGCCTGGACCGAGACCTGAGCCGAGAGGTGCACAAGGCTGAGTGGAGGGTGAAGGAGCAGAAACTCCAGGATGACATCAAGACCCTGAGAGACAAACTGCTCCTGCTGGGCAGGGAGAGGGGCTCGTCCTCAGATCACAGGCGCTACTCTATGCTGGACCCGTCGACCCTGGACTCGGAGGTGACACTTCTGCGCCAGCGGCTCATGAGCACAGAGGAGGCTCTGAGGGGAGCCCTGGAGCACAACCAGGAAGTGGACCAGCTGGTGCAGGCCATGCGCACGCACCCAGACAAGAGCGAGGTGCATGGTGGTGCAAATTCAGCCAATGGAATTCATCAACAGAATTCGTCCTTTACTCAAGATGAACAACACTGATATAGGAGAAGAAGAGCTCATCTTGAATTGGGGAAATACAGAGGTACATTTTAAAAGAAGAAGTCAGTATGACTTGGGACTAGCACGCCACTGGACTCCAGACAACATTTCCTGTTTACAGTTACTACCAAAACAATGTCTCTCTATCTCAATATGTACATTCATCTGTTGCAAAAAAGAAAAACACCCATTAGCCAAACTTAAGACAGCTTGAAGATACTGTAAAATAGTTGACAGAGGTGAAGAATTATAGGTATGACTTTTGAAAACTGATACATACCCTGCCTACATACCCAAGGATGGTATTGGACATTTGGGCATGAGATAACCTTTTATCTTAGTTTATTAGAGATCGTGACCCTATGAGCCTTGAAGGATGAATTGGGACTCCAGAGAATGAAATGACTCTGGTGTCTGATTGAAAACAAAGATTAAGAATTTGGCCTCAATCCAtcactttttgttttatttatttgccacacttatttttttttaatccttcTTAGATTACTGTAGCTGATTTGACCAGTGACGTTCCATTTGCTTCATAGCGAACATGCTCGTAGTGAACATGTGAATGAAACGGGGATGCTGCTGGATTTAAGCTGATGTTGTATCTACATGTGAATATAGCTGCATTATCTGAAACCTGTGCATACTGTAATTGTGTATTTAGTCAACTGAACCAATGCAACTTGGTGCCGTGTGTGCACCAAATAGCTATCAGTTTAATGGTTTACTCATTTTAACTAAGTAATCCTTAATTCCACTGTGGCTTTACTGGATAGTGGGAAACCATACCACTTTGTAGTGTTTTCATACACgtgaggggaaaaaaattaaaaaagaaagtcTTAACTTCCTATTGTTGATCATTTATCTAAAGAAAGTTCAACCTAGATCAATGCCTTGGGATCACTTTGTCCTTTGATTCGAGTAGGCCACTAAACGGCTGTTTGGAGCACAATGCAAACAATGGAACATTcaaaggttgtgtcccaaatggcactctatgaccaatatagtgcactacttttgaccagaaaagtagtgaactatatagggaatagagtgccattaggGATGGAGGCCTACTGTAACTGCTTCCTCCATTCTGGATGATCCCTCCCTTCTGGATGTAAACAACTAATCACAATGTACAGAATTGATACGTTACGGTCTTCCAAATGTTATTATCTCCATTGAACAAGCCAACAGGGAGATTCTAAATGCAGTCCATTACTGTATTCTTGGGAGATTAGATGATATTCTGGCTGCGTCTCGAATGGCACCCTAATTTCCTacgtacagtgagctccaaaagtattgggacagtgacaaatgttttgttgttttggctctatactccagcactttggatttgaaatgatacaataacTATGAGATTAAAGTgaagactgtcagctttaatttgacgGTATTTTCTTTTCTTAtcgggtgaaccatttagaaattacagcaccttttgtacatagtccccccattttaaggGACCAtaggtattgggacaaattcacttatgtgcaTTAAAGTAGTAAAATGTTAAGTAttatcgcagtgctagaggcgtcactacagatccgggttcgatcccgggctgtatcgcaaccggccgtgatcgggagtcccatagggtgacgcacaattggcccagtgtcgtctgggttaggggagggtttggctgggggagctttacttggctcatcgcgctctagtaaCTCCTTGTGGTGGaccgggcacctgcaggctgacctcggttaTCAATTGAACCTTGTTTCCTccgacgcattggtgcggctggcttccgggttaagcgggcgggtgttaagattCGTGGTTAGGCGGGCCATGTTTCGGAGGACCCCTGATTGGACCTTCGCCTtccgagcccattggggagttgcagtgatgagacaatgtcgaaattggggagaaaggggggtaaaatacaacaacaacaaaaaattgtaagaataatattaataataagttcagtatttggtcccatattcatagcatgcaatgactacatcaagcttgtgaatcTACAAATTTGttagatgcatttgctgttttattgtttcagattgttttgtgtcattttggagtcaattttattgtaaataagaatagaatatgtttctaaacacttctacatgaataTGGAATAgctaatcctgaatgaattgtgaataatgatgagtgataaAGTTAAAcgtacaaatatcatacccccaagacatgctaacgtCTCACCataacaataacaggggaggttagcatttttggggggtatgatatttatgcctctaactttttccctcatcattattcatgaatcAATCAGGAggatccgtaatcatggtagcatccagattagtgtagaagtgtttagaaacatattatattcttatttacaataaaaatgacaatacattatctaccattaatttctattgggcacaaaataatctgaaacacaactaaaacaaacagcaaatgcatccaacaaatgtgtagagtcacaagcttgatgtagtgattgcatgctatgaatatgggaccaaatactaaacttttgactactttaatacacatatcgGTCAATTTGTCCCAATTATTTTGGTCCCCTAAAAATCGGGGttctatgtacaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1229374 lncRNA downstream 80769 47558586 ~ 47631597 (-) True G1080128
TU1229372 lncRNA downstream 155955 47556123 ~ 47556411 (-) True G1080126
TU1229371 lncRNA downstream 157571 47554568 ~ 47554795 (-) True G1080125
TU1229367 lncRNA downstream 159184 47552904 ~ 47553182 (-) True G1080121
TU1229363 lncRNA downstream 165010 47547097 ~ 47547356 (-) True G1080117
TU1229509 lncRNA upstream 74911 47794471 ~ 47801610 (-) True G1080244
TU1229513 lncRNA upstream 110561 47830121 ~ 47831801 (-) True G1080246
TU1229565 lncRNA upstream 143463 47863023 ~ 47863384 (-) True G1080295
TU1229566 lncRNA upstream 144111 47863671 ~ 47863989 (-) True G1080296
TU1229630 lncRNA upstream 235416 47954976 ~ 48024877 (-) True G1080352
XM_021623945.2 mRNA downstream 990 47663044 ~ 47711376 (-) True LOC110537701
XM_036937663.1 mRNA downstream 1045 47663044 ~ 47711321 (-) False LOC110537701
XM_021623942.2 mRNA downstream 1296 47663044 ~ 47711070 (-) False LOC110537701
XM_021623944.2 mRNA downstream 1296 47663044 ~ 47711070 (-) False LOC110537701
XM_021623947.2 mRNA downstream 1296 47663044 ~ 47711070 (-) False LOC110537701
XM_021623961.2 mRNA upstream 192088 47911648 ~ 47942039 (-) False LOC110537706
XM_021623962.2 mRNA upstream 192088 47911648 ~ 47942039 (-) False LOC110537706
XM_021623963.2 mRNA upstream 192088 47911648 ~ 47942039 (-) False LOC110537706
XM_021623964.2 mRNA upstream 192088 47911648 ~ 47942039 (-) False LOC110537706
XM_021623965.2 mRNA upstream 192088 47911648 ~ 47942039 (-) False LOC110537706
TU1227962 other downstream 895301 46816443 ~ 46817065 (-) True G1078783
TU1227478 other downstream 1506278 46202604 ~ 46206088 (-) True G1078323
TU1225874 other downstream 2559029 45133852 ~ 45153337 (-) True gria4b
TU1225480 other downstream 3111478 44546519 ~ 44600888 (-) False LOC110537661
TU1229609 other upstream 194991 47914551 ~ 47922446 (-) True LOC110537706
TU1230355 other upstream 698861 48418421 ~ 48418884 (-) True G1081055
TU1230892 other upstream 1181848 48901408 ~ 48905274 (-) True G1081571
TU1231158 other upstream 1268452 48988012 ~ 48988353 (-) True G1081813
TU1231174 other upstream 1289789 49009349 ~ 49010152 (-) True G1081829

Expression Profile