RNA id: XM_021623965.2


Basic Information

Item Value
RNA id XM_021623965.2
length 5213
RNA type mRNA
GC content 0.55
exon number 21
gene id LOC110537706
representative False

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 47911648 ~ 47942039 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTCAGGCCCAAGTGTTTTGGCGTCGTTCAATCATGGCGGAATGGAAGGTCTATTGAACTGAGGTGGATCCTCAGTAAAGAAAAACATGTATCTGCCATGTTTTGGCGGGTGCAACTGATTTTGGATTAATATGTAGCGAATCGCTTGATCCTGTAATTCAGGACTGTCATAACGACGTTGTACTTGTCTCAACACTGCATGGTAAATTGGAAGACGGGGAGTTCACACCAAGCTAGCTGAATAACTTCGagCCACCTGCAACTGGACACCTACATTTATGGTAACATTTTCTTCAGACTCGAGATACGACAAAAGCGTTGCCAATTGATGATTCAGCAGGTGAAACCGCATCTGACCGGCACCATGCCTGTGGTGTGGCCCACCCTCCTTGACCTGGGCAGGGATGAGTGTAAGAGAATTCTCCGTAAACTTGAGCTGGAGGCGTACGCCGGCGTAATCAGTGCTTTGCGAGCCCAAGGCGACCTCACCAAGGACAAGAAGGACCTCCTCGGAGAACTCACTAAAGTCCTCAGCATTTCAACAGAGCGTCATCGTGCCGAGGTCCGTAGGGCCGTCAACGATGAGCGCCTTACCACCATTGCCTATCACATGTCGGGTCCCAACAGCTCCTCAGAGTGGTCAATCGAGGGACGTCGGCTGGTCCCCTTGATGCCCAGGCTGGTCCCCCAGACAGCGTTCACCGTGACTGCCAACTCAGTGGCCAGCgccacagccaatcagaatgctTCTCTCTTGCTGCCTGCGGAAACAGGAAATAAAGAAGTGGTTGTTTGCTACTCCTACACAACCACCACGTCCACCCCCACCAGTGCCACGGCGCCCAGCGGCAGTGCAACAGCCACGGTGAAATCGCCCCGTCCGGCCAGCCCTGCCTCCAACGTGGTGGTGCTGCCCAGCGGGAGCACTGTCTATGTGAAAAGCGTTAGCTGCTCTGACGAGGACGAGAAGCCACGCAAGCGGAGGCGGACCAACTCCTCGAGCTCTTCCCCTGTGGTGCTGAAGGAGCTGGCCAAGGTTGCCCCTCCCTTGTCCAAGACCATCACCGTGCCAGTAAGCGGCAGCCCCAAGATGAGCAACATCATGCAGAGCATCGCCAACTCGCTGCCACCGCACATGTCCCCCGTCAAGATCACCTTCACCAAGCCCACCACCCAGACTACCAACACCACCACGCAGAAGGTAATCATTGTGACAACCTCTCCAAGCTCCAACTTCGTTCCCAACATCCTGTCCAAGTCTCATTCGCACAACTACGCGGCCGCCATGTCAAAGCtggtttccacctccatgctgaccTCGGCCAGCCAGAAACAGACGGTGTTCATCCCGGCCAGCTCAAGTCCCTCCTTGGCCCCCAACACGATCGCTGTGACCACCGTGGTCTCCTCCAGCCCGTCTGTGCTCATGTCGACCATAGCGCAGAGTGGCTCATCGGCAGGCGTGAAGGTGGCCTCTGCCAGGCTCCCCTCTCCTAAGACCATGGTGAGCTCTCCCACCCAGATTCTGTCCCAGTTCCCCAAGCAGCACCCGCAGTCCCCCAAGCAGCTGCAGCAGGGCTCCCCCATGGGGGCTGGCGCCATGGGCCAGGTCTCCAACACTCCCCCCAGCTCCAAGCCCATCATCCAGATCAAGCAGGAGTCAGGTGTAAAAATCATCACCCAGCAAATGCAGCCCAGTAAAATCCTGCCCAAGCCCTCCTCTGCAGGCATGCCCAGCAACAGCTCCTCCCCCATCATGGTCGTCAGTAGCAACGGGGCCATCATGACCACCAAGCTGGTGTCCCAGCCCACAGGCACCCAGGCCTCTTACTCAAGGCCCGCCATGAGCTCCACGATTGGAGCCAGGATGGCGACGTCGGCCAGTGGTGCCACCTATGTCAAGACCACCAGTGGCAGTATCATCACGGTGGTCCCGAAGACTCTAGCCACACTGGGCGGCAAGATCATCAGCAGCAACATTGTGTCTGGTACAACAACTAAGATCACCACCATTCCCATGACGTCCAAGCCCAATGTTATCGTGGTGCAGAAGACTACTGGCAAAGGAACGACCATCCAGGGTCTGCCTGGCAAGAATGTGGTCACCACATTATTGAACACAGGGGGTGAGAAGACCCTACAGGGTGTTCCGGGGTCCAAGCCAGCCATCATCACAGCCTCCAGACCCATCACCAAGATGATTGTGACACAGCCCAAAGGCATGGGTTCTGGGGTGCAGCCTACCACCACCAAGATCATCCCCACCAAGATAGTGTACGGCCAGCAGGGCAAGACCCAGGTGCTGATCAAGCCCAAGCCCATCTTCCAAACAGCGGTTGTGAGCGAGCAGACCAGGCAGCTGGTGAGCGAGAACCTGCAGCAAGCGTCCCGAGTGGCCGATGCTGGTCCTGCTTACGCACAGGAGAGGGCACTCAAGGATGAGTCGGGTGCCATCGCTGAGGGCAGGTCCCCGCCTGCCGAGGACTCCCACGGAAGCGGTCACGACTCCCAGTCCGTAGTGCACATCATCTCCTCCAGGGGGCAGGATTGGGCTGAGCAGCACGAGGTGTCGGTGGAGTCCAGCCCAAACATCATCTACCAGGACGTGTCTACGGGTGACATGTCCCAGTCGGCCACCTCGACCATCAAGGCCCTGCTGGAACTGCAGCAGACCACAGTGAAGGAGAAAGGTGAGGCCAAGCCCAGGCAGCAAACCATAGACCTGAGCCAGATGGCTGTTCCCCTTCAGATGGCCCAGGAGAAGAAGCAGCAGGCCCTAGGCTCCCCCGAGATGTCCACTGTAGAGACTGAACCACCCATTAAATATATCACTGCCGGTAAAGCCAGCAGGGCCGGACCATCCTCTGGAGGCTTGGGGGACGTGGTCATGACCGCTAGCCAGCAGCAGGGGGCGCCCTCGCAAAACGCCAGTCACTCCCCCGTGGTGGTTAATTCCATCCCTACCTCCTCTACAGTCACCGTTACACGCATTGTCCAACTGGCTTCAGCGGGCCAGCTGATCCACAGTAAGCAGGCGGAGGAAACTGGGATGGAGGAGGGCGAACTGGAGGGGGACACCCTGGACCCCCAGACGGGCCTGTTCTACCGCTCCATTCAACCCGCTGTAGCCCAGCCCCCCGCCCCCCAGCCCCCTGCCCCCcagccccacacacacccccaccaccAAAGCCAGTCACACCTGGCGCCCCAGTTGGAGCAGGGCAGACACATACCCCACTCCACCCAAACCCCACCCCCACAGCTACACAGCAAGCCCCAGAATAGCCTGCCTTCCACCGCCACCGTGGCGAAGAAGCCACCCCAGCTCCAAGAGCAGTACCAGCCCAAGCCTCAGGCTCCAGGGCAGAGCCTGAAGGAGAGGCCCTCCTCTGCCTCAGGATCCCCCCAGCTGGCAAGCCTGGGCACCCCCACCAAGCCTCCCTCACTTACCCCCCAGCTCCCCAAGTTGCAGCAGGCGCCCACCTCCCACCACAGGCCCATCCACACACAGCTGTCCCAGCCACCGCCATTACAGGCCCACCACCCGGTGGGTGCGGACAAGACTCCTGCCACAAGCCAGGCGCCAATCATCACCCAGGGCGCCAGCGTCACCAAGATCACCTTCGGCAGTAGCAGCAGCCACCAGTCCCCGCCCGTATCCAGCAGCGGTGAGGCCACTGCCAAGCTCGTCCCTGCCGAGCCAAGCAGCTCAAGCTCGTCCGGTGGCGAGAAGCCCTCTGTCTCGGACATCCTTAAGATCTCCATGATGGAGGCGGAGATCGACCCCAGCGCCGAGCCCGTGGTGGTGGACTCGTCCAGTGACTGCAGCCCCTACATAAAGGCCCTGGGCATGGGGGCAGGGGGAGGCTCAGGGGCGCTTGGGGGCTCAGGCCCGATCATAAGCAGCTCAGGGGTCTCCCTGCATCACTCGTCCCACTCCAAGCCCCTGCATGACCAGTTTAGCCGCGTCCAGGGCCTAGCAGCCAAGAGCAAAGAGAACATGGACGTCATTGAGGTGATCCCTCAGTACTCCATCATGCCAGACTCCAGTCAGTCCAACGTGGTGGTGGAGCCCAGCGGCTTCCTGGAGATCACAGACTACACCAGCCAGCGGCTGGACGAGGAGAGCGCCATGGAGCAGGAGGTGGACAGCAGCAACGACGAGGCCACTGCTATCAGCCCCATGGAGGAGGGCTGCCCCGACCAGTCCCAGTGACACCAACACTTGTGACGGGAATGACGTTGTGGCTTTGGTGTGAAGGGGATGATCTTGGTGTGACAGGGAAGATTTGGAAATGGTCATGACTGTGTCATCGTGGTTACCTCCTGATGCAGCTGGAACTCTAAGGACTTAACAGCAAGCGGACACAAATGTGTGATAACTGTGTAAGgacttctgtttttttattttttatttaattgagCAGCAACTTCATAAATATGCCTGGATGATTTCAGATAAGGCTTTGTGAAGAACTTAAAGACCTGGAAAGGGGAAAAAAATTAAAGAGTCAAAGGGAGACCTAAGTTAACCCTAGCTAAGCTGAACGGCTGCCTTGTGTACAGGTGAAGTTGGCCAGGAACTGCATCCAGGAAACACAGGACAATGTTTTTCGATAATTTCAAAGTGTACATTTTGTATTCACTGAATTGGCATTTTAGTAAAGCAATGCTGTGCTCAGGAGCTTAAAAAGTTGATGTGGCTCTTCTGGTcattttatttaatattttatttaacacttttataGCAAGGCAATATTGAAAACTGGAAATAGGACCTAGCCTGAAACATGACCACATTTTAAGAACTTCATCTACTTAACTCAACAAAATAAGTAGAGGAGATAGGACTGACCTTGCTGTAATTATGCTGATTCATTGTGCTTGCATAGCGGTATTTGTTGAACACCATTTTTGATTTGCAAAgccttttgttgtttttttaaggtACATTTTAATACATGACATTATTGTACACATACAGTTTGTTTATAGTGGGCACGTGCATGCTAAATAACACACATGTAAGTGATAAAGTGCTTGTAGTTAGCCTTGAGGAATTAGCACTTTGTAGTTGATACTGTTGGTAAGGACATTGttggaagaaaaaaataaattcACCCATGTTCCTTCAATGGTGTTTCTGTTTTGTGTTCTCTCATAGGTGTAACGTTTAGAATTTTAACTGCATAAACTTTTATACAAAAACGGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1229566 lncRNA downstream 47659 47863671 ~ 47863989 (-) True G1080296
TU1229565 lncRNA downstream 48264 47863023 ~ 47863384 (-) True G1080295
TU1229513 lncRNA downstream 79847 47830121 ~ 47831801 (-) True G1080246
TU1229509 lncRNA downstream 110038 47794471 ~ 47801610 (-) True G1080244
TU1229447 lncRNA downstream 192088 47712366 ~ 47719560 (-) True LOC110537702
TU1229630 lncRNA upstream 12937 47954976 ~ 48024877 (-) True G1080352
TU1229724 lncRNA upstream 140015 48082054 ~ 48082319 (-) True G1080439
TU1230269 lncRNA upstream 350637 48292676 ~ 48292893 (-) True G1080972
TU1230278 lncRNA upstream 357352 48299391 ~ 48299923 (-) True G1080980
TU1230281 lncRNA upstream 361298 48303337 ~ 48303572 (-) True G1080983
XM_036937667.1 mRNA downstream 120618 47713010 ~ 47791030 (-) False LOC110537702
XM_021623950.2 mRNA downstream 120619 47713010 ~ 47791029 (-) False LOC110537702
XM_021623952.2 mRNA downstream 120620 47713010 ~ 47791028 (-) False LOC110537702
XM_021623953.2 mRNA downstream 120620 47713010 ~ 47791028 (-) False LOC110537702
XM_021623954.2 mRNA downstream 120622 47713010 ~ 47791026 (-) False LOC110537702
XM_021625880.2 mRNA upstream 1279862 49221901 ~ 49228404 (-) True LOC110538906
XM_021624007.2 mRNA upstream 1368182 49310221 ~ 49390288 (-) False LOC110537714
XM_021624014.2 mRNA upstream 1368182 49310221 ~ 49432630 (-) False LOC110537714
XM_036937704.1 mRNA upstream 1368182 49310221 ~ 49432631 (-) False LOC110537714
XM_021624011.2 mRNA upstream 1368182 49310221 ~ 49506346 (-) False LOC110537714
TU1227962 other downstream 1094583 46816443 ~ 46817065 (-) True G1078783
TU1227478 other downstream 1705560 46202604 ~ 46206088 (-) True G1078323
TU1225874 other downstream 2758311 45133852 ~ 45153337 (-) True gria4b
TU1225480 other downstream 3310760 44546519 ~ 44600888 (-) False LOC110537661
TU1230355 other upstream 476382 48418421 ~ 48418884 (-) True G1081055
TU1230892 other upstream 959369 48901408 ~ 48905274 (-) True G1081571
TU1231158 other upstream 1045973 48988012 ~ 48988353 (-) True G1081813
TU1231174 other upstream 1067310 49009349 ~ 49010152 (-) True G1081829
TU1232115 other upstream 1735393 49677432 ~ 49680803 (-) False G1082693

Expression Profile