RNA id: TCONS_00040371


Basic Information

Item Value
RNA id TCONS_00040371
length 552
RNA type processed_transcript
GC content 0.41
exon number 3
gene id XLOC_020337
representative False

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 17606588 ~ 17611582 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTGACACCGGATATTTGAACTGTTCGATTGAATCTATATTCAAACGATTCAAACCCTACGCACTTCTCAAATGCTATACAACTCTCTTTCCTTCCTTGTTCGtttacataaaacaaaatcaGTATTTAAAGAAAGCAATAGCTGTGATATTGCTTAGAAGTTGTGATACTTCTAAGCAACGCGCACTGTTTTTTGTACGAAATAAAGCTgcgcattGTATCTACGCTGTGGCGTAACGTCTGACGTCATTTACTCGCGCCAGCAACGGGAAACAAACGTGGAGAAGAAGCATCACATTAGCGGATTGTTTTGATCGTCAAAATTTGGTATTAATCATATTTATAGCGCAGTATGGATGACGAGGAAGAGACATACAGACTATGGAAAATTAGAAAAACTATAATGCAGCTTTGTCACGATCGCGGATATTTGGTGACGCAGGATGAATTGGACCAGACTCTTGATGAATTCAGGAGTCAGTTTGGAGATAAACCGAGCGAGGGTCGACCACGACGAAATGACCTGACAGTCCTGGTGGCCCACAATGACGAC

Function

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0005665 RNA polymerase II, core complex cellular_component
GO:0005666 RNA polymerase III complex cellular_component
GO:0005736 RNA polymerase I complex cellular_component
GO:0003899 DNA-directed 5'-3' RNA polymerase activity molecular_function
GO:0003677 DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040801-83 Predicted to enable DNA binding activity. Predicted to contribute to DNA-directed 5'-3' RNA polymerase activity. Predicted to act upstream of or within transcription, DNA-templated. Predicted to be located in nucleus. Predicted to be part of RNA polymerase I complex; RNA polymerase II, core complex; and RNA polymerase III complex. Orthologous to human POLR2E (RNA polymerase II, I and III subunit E).

Ensembl:

ensembl_id ENSDART00000132447

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00040370 lncRNA upstream 65531 17539163 ~ 17541057 (+) True XLOC_020336
TCONS_00040366 lncRNA upstream 72581 17531024 ~ 17534007 (+) False XLOC_020336
TCONS_00040363 lncRNA upstream 100550 17503508 ~ 17506038 (+) True XLOC_020334
TCONS_00042107 lncRNA upstream 795227 16810284 ~ 16811361 (+) True XLOC_020324
TCONS_00042106 lncRNA upstream 1669320 15788139 ~ 15937268 (+) True XLOC_020308
TCONS_00040373 lncRNA downstream 416 17607753 ~ 17611582 (+) True XLOC_020337
TCONS_00040376 lncRNA downstream 177305 17784642 ~ 17803402 (+) True XLOC_020338
TCONS_00042108 lncRNA downstream 636421 18243758 ~ 18304288 (+) False XLOC_020344
TCONS_00042109 lncRNA downstream 636499 18243836 ~ 18304288 (+) False XLOC_020344
TCONS_00042110 lncRNA downstream 636630 18243967 ~ 18304288 (+) False XLOC_020344
TCONS_00040368 mRNA upstream 62447 17531214 ~ 17544141 (+) False XLOC_020336
TCONS_00040367 mRNA upstream 62609 17531214 ~ 17543979 (+) False XLOC_020336
TCONS_00040365 mRNA upstream 65311 17531020 ~ 17541277 (+) False XLOC_020336
TCONS_00040369 mRNA upstream 67476 17536989 ~ 17539112 (+) False XLOC_020336
TCONS_00040364 mRNA upstream 85295 17509422 ~ 17521293 (+) True XLOC_020335
TCONS_00040374 mRNA downstream 177077 17784414 ~ 17823608 (+) False XLOC_020338
TCONS_00040375 mRNA downstream 177220 17784557 ~ 17819557 (+) False XLOC_020338
TCONS_00040378 mRNA downstream 220930 17828267 ~ 17831253 (+) True XLOC_020340
TCONS_00040379 mRNA downstream 548663 18156000 ~ 18160234 (+) False XLOC_020341
TCONS_00040380 mRNA downstream 548750 18156087 ~ 18160269 (+) True XLOC_020341
TCONS_00040360 other upstream 156322 17443345 ~ 17450266 (+) True XLOC_020332
TCONS_00040335 other upstream 967163 16639310 ~ 16639425 (+) True XLOC_020322
TCONS_00040326 other upstream 1303260 16302317 ~ 16303328 (+) True XLOC_020314
TCONS_00040324 other upstream 1328963 16277498 ~ 16277625 (+) True XLOC_020313
TCONS_00040312 other upstream 1871745 15732967 ~ 15734843 (+) True XLOC_020306
TCONS_00040377 other downstream 217122 17824459 ~ 17824573 (+) True XLOC_020339
TCONS_00040381 other downstream 559262 18166599 ~ 18175378 (+) False XLOC_020342
TCONS_00040385 other downstream 639955 18247292 ~ 18280440 (+) False XLOC_020344
TCONS_00040386 other downstream 645821 18253158 ~ 18280440 (+) False XLOC_020344
TCONS_00040387 other downstream 647432 18254769 ~ 18254855 (+) False XLOC_020344

Expression Profile

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