RNA id: XM_021624011.2


Basic Information

Item Value
RNA id XM_021624011.2
length 3593
RNA type mRNA
GC content 0.49
exon number 24
gene id LOC110537714
representative False

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 49310221 ~ 49598356 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cacacacacaccacacacacacacacagagagcgacaCTAAATGAGCAGCAGCCAGTCTAAGAGCTGCCAGAGTGGGAAGTAGCAGTAGCTTCAGGAGAGCTCCTTCCAGTCGAGCAGTatcagagtgagtgagtgaatccTTCCAGTGCTCCTGAAACTCAGACATTGAGCATACGCACTCCATACACGGGCAtgcaggagaagaagaaaaaaagcttGGAGCAGTATCGCTATGAAGATGAGGACTCTCCGCCTGAGCACGGGTTCCCGCGGCTGACCAACGAGGTGCGCGCCCCTGAGTTGGTGCACGTGTCGGAGAAGAACCTCTCAGAGATTGAGAATGTGCATGGCTACGTGTCCCACTCCCATATCTCCCCGCTCAAGgCGAGTCCCGCCCCAATAATTGTCAACACGGATACTCTGGAGTCTGTACCTTACGTGAACGGGACAGAaattgaatatgagtttgaagAAATCACGCTAGAGCGGGGGAACTCAGGGTTGGGCTTCAGCATAGCTGGAGGGACAGATAACCCCCATGTCGGCGATGACCCAGGGATCTTCATCACCAAGATCATCTCTGGTGGCGCGGCAGCAGAGGATGGCAGGTTAAGAGTGAATGACTGCATCCTGCGGGTGAATGATGCCGACGTGTCCGAGGTGTCCCACAGTAAGGCTGTGGAGGCACTGAAGGTGGCCGGCTCCATCGTCAGCCTCTACGTTCGCCGGAGGAGACCCATGCTGGAAACTGTCATTGAGATCAAACTCATCAAAGGACCAAAAGGGCTGGGCTTTAGCATCGCAGGAGGGGTGGGCAACCAGCACATCCCGGGGGACAACAGCATCTATGTAACTAAGATCATAGATGGCGGTGCAGCACAGAAGGACCAGCGCTTGCAGGTTGGAGACAGGCTGCTTATGGTGAACAACTACACTCTGGAAGAGGTCTCCCACGAGGAGGCAGTAGCCATACTGAAGAACACGTCTGACGTTGTCTACCTGAAGGTGGGCAAGCCCACCAGTGTTTACTTATCAGATCCCTATGGGCCACCTGATATCACGCACTCGTTCTCTCCAGCAATGGAAAATCATATCTCTTCCGTGGGAAACAACGGCACTCTGGAATACAAGTGCAGTCTTCCCCCCATGCCCATCTCCCCCGGAAGGTACTCCCCCCTCCCAAACCAACTACTGGGGGAAGAGGACATAAACAGGTTGGATGGTTTTTCCTTCTTACGAAATGCCTCAATAGATGACGGAGAGGGTCACAGGTTTGATTCGCAGCACTTCCAGTTGAGGCCTCCTGAGCCAGTTTACAGCACTGTGAACAAACTGTGTGACAAAACACCTTCTCCCCGCTGCTATTCCCCCATGGAGTGTGACAAAAGCCTCCTCCACTCCATACCCTTCCCTCACTATCACTTaggcctgctccctgactccGAGATCACCAGGGATCCCAGGAGGATGGTCCTCCATAAGGGCTCCACAGGCCTGGGATTCAACATCGTGGGAGGGGAGGACGGAGAGGGCATCTTTGTCTCCTTCATCCTGGCGGGAGGGCCCGCCGACCTAAGCGGAGAGCTGCGGAGGGGAGACCAGATCCTGTCGGTTAATGGCATCGACCTACGCGGGGCCACCCACGAGCAAGCGGCTGCGGCACTAAAGGGGGCGGGCCAAACGGTCACCATCATTGCCCAGTACCGTCCCGAGGAACTTGCTTTGTGCTCCCCGCGCCGGGCCCCTTCGCCAGCACCAGAGTACGGGCGCTTCGAGGCCAAAATCCATGATCTGCGGGAACAGATGATGAACCACAGCATGAGCTCTGGGTCCGGATCCCTCCGAACCAATCAGAAACGCTCCCTTTACGTCAGAGCACAGTTTGACTATGAGAAGGCCAAAGACAGTGGCCTCCCTAGCCAAGGCCTCAGCTTTAGATACGGGGACATCCTCCACGTCATCAACGCCTCAGACGATGAATGGTGGCAGGCCCGAAGGGTGACCCCCGATGGGGACAGCGAGGAGATGGGGGTCATCCCCAGCAAGAGGAGGGTTGAGAGGAAAGAACGAGCACGTCTAAAGACAGTGAAGTTCAATGCCAAACCTGGAATGGATTCAAAAGGGTCATTCAATGACAAGCGTAAAAAGAACCTCATCTTTACACGAAAGTTCCCATTCTACAAGAACGAGCTGGGTGAGCGGGATGGCAGTGATTCCGAACGGAGTCAAGAGGACATGATTCTCTCTTATGAGCCTGTCATTCGACATGAGATTAATTACACCAGACCCGTCATAATCCTTGGACCGATGAAGGACAGAATTAATGACGACCTGATATCAGAATACCCGGACAAATTTGGCTCCTGCGTGCCGCATACCACTCGATCAAGGAGGGACTACGAGGTCGATGGGCGGGACTACCATTTTGTAATGTCCAGAGAGCAGATGGAGCAGGACATCCAAGAGCACAAGTTCATTGAGGCGGGCCAATACAACGACAATCTCTACGGAACCAGTGTTCAGTCGGTCAAATATGTGGCTGAGAGGCAGGGTAAACACTGCATACTTGACGTGTCGGGGAATGCCATTAAACGACTACAAGTAGCACAACTCTATCCCATTGCCATCTTTATAAAGCCCAGATCCATCGATTCATTAATGGAGATGAATAAGAGGCTAACAGAAGAGCAGGCCAGGAAGACATTTGACCGGGCCATGAAGCTGGAGCAGGAGTTTGCCGAGTTTTTCACAGCCCTTGTTCAAGGGGACACCTTAGAGGAAATTTATAACCACTGCAAAATGGTGGTAGAGGAGCATTCAGGACCCTACATCTGGATCCCGTCAAAGGAGAAATTATGAGAACACACCACTTTGGCAGGGAGATTGGACTGCTAGTAACAAAATACTTTGTAACATATGATCAATTGTAATGGCAATTTATATTGTTCCTAATTATAGCCaataaatatgatttttttttgttattgtttattcTTTTTTTCACTTTAAATATGAATGTTCCTGAATGTACACCACAAAGTTCAAAAAACATTTTTGGCCTAAAAAAATGTTACTGTTTGTATATTtaatgatttttatttttaagaaaatGTTAAGGAAATGAAATAAACATGGGCATGTGTTCACCTCGACTGCGTGGAATTTCAAATGAATTTTAGAAGATGGCGGCAGATACAAGTCATTGCCACACCAAcaaaggaggggaaggaaataaTATCAGCTTCTTTTGCTTTTCTCCACCCAACAGCTAGCACTTTGTGTCCACTGACGCTCACCTCACATCAATAGATGACATTTTGTGTGACTGGCATCTATGCACTCACATGGCCCTTGGACACAGTTCATCATACTCCTGCTATTTTTAcattgttattttgtattcattTTATTATGTTGTGAATCCAGATTTGTTGGACATTTTAAATTTGAATAAGAATTTcaactttattgtttattttgcAGATTCTTTCATTATTTCATTGTTGAGATGCTTTGAGAGGGCACAACAgcacagaaaatatttattataAAGATGTATAACTTTgattaaacattttatttgaaaaagGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1232063 lncRNA downstream 100469 49204923 ~ 49209752 (-) True G1082660
TU1231270 lncRNA downstream 175596 49134353 ~ 49134625 (-) True G1081922
TU1231175 lncRNA downstream 299668 49010198 ~ 49010553 (-) True G1081830
TU1231157 lncRNA downstream 322281 48987723 ~ 48987940 (-) True G1081812
TU1231155 lncRNA downstream 323389 48986603 ~ 48986832 (-) True G1081810
TU1232400 lncRNA upstream 106801 49613147 ~ 49613816 (-) True G1082969
TU1232120 lncRNA upstream 112229 49618575 ~ 49673210 (-) True LOC110537716
TU1232404 lncRNA upstream 115157 49621503 ~ 49628063 (-) True G1082972
TU1232403 lncRNA upstream 120880 49627226 ~ 49627717 (-) True G1082971
TU1232116 lncRNA upstream 171086 49677432 ~ 49678286 (-) True G1082693
XM_021625880.2 mRNA downstream 81817 49221901 ~ 49228404 (-) True LOC110538906
XM_021623969.2 mRNA downstream 1368182 47911648 ~ 47942039 (-) False LOC110537706
XR_005034997.1 mRNA upstream 112222 49618568 ~ 49673012 (-) False LOC110537716
XR_005034999.1 mRNA upstream 112222 49618568 ~ 49673012 (-) False LOC110537716
XR_005034998.1 mRNA upstream 112222 49618568 ~ 49673130 (-) False LOC110537716
XR_002475675.2 mRNA upstream 112222 49618568 ~ 49673217 (-) False LOC110537716
XM_036937706.1 mRNA upstream 174615 49680961 ~ 49687659 (-) False crebzf
TU1231174 other downstream 300069 49009349 ~ 49010152 (-) True G1081829
TU1231158 other downstream 321868 48988012 ~ 48988353 (-) True G1081813
TU1230892 other downstream 404947 48901408 ~ 48905274 (-) True G1081571
TU1230355 other downstream 891337 48418421 ~ 48418884 (-) True G1081055
TU1229609 other downstream 1387775 47914551 ~ 47922446 (-) True LOC110537706
TU1232115 other upstream 171086 49677432 ~ 49680803 (-) False G1082693
TU1232723 other upstream 778153 50284499 ~ 50285313 (-) True G1083278
TU1233718 other upstream 1322058 50828404 ~ 50829115 (-) True G1084224
TU1234449 other upstream 1970071 51476417 ~ 51476771 (-) True G1084908
TU1234432 other upstream 2005794 51512140 ~ 51517079 (-) True LOC110537745

Expression Profile