RNA id: TCONS_00040375


Basic Information

Item Value
RNA id TCONS_00040375
length 1283
RNA type mRNA
GC content 0.48
exon number 11
gene id XLOC_020338
representative False

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 17784414 ~ 17823608 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAACAATATCGCGGCCCCCATAGGACCCTCAGAAATTGGGTTGCGCGCACTTTTTGGAGAGAGTGTCCTTGATCTTCAGCTGTGAACGAGTGGACTTATACCTGATCAACAGACATCATGGTTCAGGAAATATGCGTTTTTATATTTTCCCTGACTGCTCTTGGCGTACTTTACACTATGAACAATGTTCCTGCATTTCAAGAgCCAGTGGTTATTCTTGAAATTGGCGTGGCTGTTCTTGTGGCAGTTTTCCTCCTGGTCTACCTCGCTACGCGCTTCAATCCTCCTAAGGATCCTTTGTTCTATGTTTTTGCAGAGTTTTCCTTCACGTGTGTCATTGACCTCACGAGTGCCCTAGAATATGATGGCTTCGCCTCTGGGTTCATGGAGTTCTACCAGAAAACGGGGGAGCCTTATCTTGGTACACCCTATGCTATCATGATGTGCTACTGGGATGGTATTGTACACTTCATCCTTTACCTGATACTGATACATCGCATGTCAAGCAGACAACAATACCGCACATTGGGGCTGTTTTGGGCTGGATCGCTGTGCGCCAACATGATTGTGTTTGTACCTGGAATCGTGGTTGGTAAATATGGCTCCGAGATACGTCCTGCCTTTTGGCTCAACATGCCCTTTTTGTTGGTGCCAATATGGGGAGCTGTGTCTTTTTTCTCTAGGCCCAGAGATATGCGTCTTGTGGGTGCGGACAAGGCTGAACGCGAGCAGAAAAAGGCTTTAATATGGCGCCCTCTGGATCTGCTTTTTGTGGTATATCTACTAGCTGCCATGGGATTTACTATCTTTAGAGGACTGGCAGTCCTGGATTGCCCGCTGGAAATCCTCAACAAATATGTGACCGAGTATGAACCGTATCTAAAGGATCCCGTGGGCTTCCCCAAAGTTATGATGTTGCTGCTCTTGTTTCACGCACTCCCGATGCTGGCTTCAtttgcatatggattgtgcacaCCTGGCTGCACTTGGATGCTCGATCGGACTGTTTTTTTTGCAGGTGCCGTTTTACAGTGCCAGTGGTCTCATATCGGAGCGTCCCTTCACCCGCGCACTGCAGAGGTGTACAGGATTCCCTCCACAGCCTTGCTGCCCGTCCTGCTCCTCAACCTGCTGTATGCAGTCGGGCCTGTGCTTCTTGCCCTGCGTTGCAAACGAGAGCCGGACTACTTCCTTCCCATCCTACCTATGGGCCAAACCAACAATgagaagaaattaagttaaactGACTACAAATAATCAAACTTAAAGAGATGGTTCACACA

Function

GO:

id name namespace
GO:0019216 regulation of lipid metabolic process biological_process
GO:1905897 regulation of response to endoplasmic reticulum stress biological_process
GO:0055088 lipid homeostasis biological_process
GO:0033116 endoplasmic reticulum-Golgi intermediate compartment membrane cellular_component
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-338 Acts upstream of or within lipid homeostasis and regulation of response to endoplasmic reticulum stress. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum membrane and endoplasmic reticulum-Golgi intermediate compartment membrane. Is expressed in intestine; liver; and posterior intestine. Used to study fatty liver disease. Orthologous to several human genes including TM6SF2 (transmembrane 6 superfamily member 2).

Ensembl:

ensembl_id ENSDART00000145260

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00040373 lncRNA upstream 172975 17607753 ~ 17611582 (+) True XLOC_020337
TCONS_00040370 lncRNA upstream 243500 17539163 ~ 17541057 (+) True XLOC_020336
TCONS_00040366 lncRNA upstream 250550 17531024 ~ 17534007 (+) False XLOC_020336
TCONS_00040363 lncRNA upstream 278519 17503508 ~ 17506038 (+) True XLOC_020334
TCONS_00042107 lncRNA upstream 973196 16810284 ~ 16811361 (+) True XLOC_020324
TCONS_00042108 lncRNA downstream 424201 18243758 ~ 18304288 (+) False XLOC_020344
TCONS_00042109 lncRNA downstream 424279 18243836 ~ 18304288 (+) False XLOC_020344
TCONS_00042110 lncRNA downstream 424410 18243967 ~ 18304288 (+) False XLOC_020344
TCONS_00042111 lncRNA downstream 424416 18243973 ~ 18304288 (+) False XLOC_020344
TCONS_00042112 lncRNA downstream 424433 18243990 ~ 18304288 (+) False XLOC_020344
TCONS_00040372 mRNA upstream 172979 17606863 ~ 17611578 (+) False XLOC_020337
TCONS_00040368 mRNA upstream 240416 17531214 ~ 17544141 (+) False XLOC_020336
TCONS_00040367 mRNA upstream 240578 17531214 ~ 17543979 (+) False XLOC_020336
TCONS_00040365 mRNA upstream 243280 17531020 ~ 17541277 (+) False XLOC_020336
TCONS_00040378 mRNA downstream 8710 17828267 ~ 17831253 (+) True XLOC_020340
TCONS_00040379 mRNA downstream 336443 18156000 ~ 18160234 (+) False XLOC_020341
TCONS_00040380 mRNA downstream 336530 18156087 ~ 18160269 (+) True XLOC_020341
TCONS_00040382 mRNA downstream 347103 18166660 ~ 18175165 (+) True XLOC_020342
TCONS_00040383 mRNA downstream 368300 18187857 ~ 18216488 (+) False XLOC_020343
TCONS_00040371 other upstream 177220 17606588 ~ 17607337 (+) False XLOC_020337
TCONS_00040360 other upstream 334291 17443345 ~ 17450266 (+) True XLOC_020332
TCONS_00040335 other upstream 1145132 16639310 ~ 16639425 (+) True XLOC_020322
TCONS_00040326 other upstream 1481229 16302317 ~ 16303328 (+) True XLOC_020314
TCONS_00040324 other upstream 1506932 16277498 ~ 16277625 (+) True XLOC_020313
TCONS_00040377 other downstream 4902 17824459 ~ 17824573 (+) True XLOC_020339
TCONS_00040381 other downstream 347042 18166599 ~ 18175378 (+) False XLOC_020342
TCONS_00040385 other downstream 427735 18247292 ~ 18280440 (+) False XLOC_020344
TCONS_00040386 other downstream 433601 18253158 ~ 18280440 (+) False XLOC_020344
TCONS_00040387 other downstream 435212 18254769 ~ 18254855 (+) False XLOC_020344

Expression Profile

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