Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00040381 |
| length | 844 |
| RNA type | nonsense_mediated_decay |
| GC content | 0.35 |
| exon number | 5 |
| gene id | XLOC_020342 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007133.7 |
| NCBI id | CM002906.2 |
| chromosome length | 39133080 |
| location | 18166599 ~ 18175378 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0099078 | BORC complex | cellular_component |
| GO:0005764 | lysosome | cellular_component |
| GO:0005765 | lysosomal membrane | cellular_component |
| GO:0016020 | membrane | cellular_component |
| id | description |
|---|---|
| ko04131 | Membrane trafficking |
| id | description |
|---|---|
| ZDB-GENE-050208-757 | Predicted to be located in lysosomal membrane. Predicted to be part of BORC complex. Is expressed in brain and pharyngeal arch. Orthologous to human BORCS8 (BLOC-1 related complex subunit 8). |
| ensembl_id | ENSDART00000152024 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00040376 | lncRNA | upstream | 363197 | 17784642 ~ 17803402 (+) | True | XLOC_020338 |
| TCONS_00040373 | lncRNA | upstream | 555017 | 17607753 ~ 17611582 (+) | True | XLOC_020337 |
| TCONS_00040370 | lncRNA | upstream | 625542 | 17539163 ~ 17541057 (+) | True | XLOC_020336 |
| TCONS_00040366 | lncRNA | upstream | 632592 | 17531024 ~ 17534007 (+) | False | XLOC_020336 |
| TCONS_00040363 | lncRNA | upstream | 660561 | 17503508 ~ 17506038 (+) | True | XLOC_020334 |
| TCONS_00042108 | lncRNA | downstream | 68380 | 18243758 ~ 18304288 (+) | False | XLOC_020344 |
| TCONS_00042109 | lncRNA | downstream | 68458 | 18243836 ~ 18304288 (+) | False | XLOC_020344 |
| TCONS_00042110 | lncRNA | downstream | 68589 | 18243967 ~ 18304288 (+) | False | XLOC_020344 |
| TCONS_00042111 | lncRNA | downstream | 68595 | 18243973 ~ 18304288 (+) | False | XLOC_020344 |
| TCONS_00042112 | lncRNA | downstream | 68612 | 18243990 ~ 18304288 (+) | False | XLOC_020344 |
| TCONS_00040380 | mRNA | upstream | 6330 | 18156087 ~ 18160269 (+) | True | XLOC_020341 |
| TCONS_00040379 | mRNA | upstream | 6365 | 18156000 ~ 18160234 (+) | False | XLOC_020341 |
| TCONS_00040378 | mRNA | upstream | 335346 | 17828267 ~ 17831253 (+) | True | XLOC_020340 |
| TCONS_00040374 | mRNA | upstream | 342991 | 17784414 ~ 17823608 (+) | False | XLOC_020338 |
| TCONS_00040375 | mRNA | upstream | 347042 | 17784557 ~ 17819557 (+) | False | XLOC_020338 |
| TCONS_00040383 | mRNA | downstream | 12479 | 18187857 ~ 18216488 (+) | False | XLOC_020343 |
| TCONS_00040384 | mRNA | downstream | 12667 | 18188045 ~ 18206349 (+) | True | XLOC_020343 |
| TCONS_00040388 | mRNA | downstream | 140112 | 18315490 ~ 18387919 (+) | False | XLOC_020346 |
| TCONS_00040389 | mRNA | downstream | 140766 | 18316144 ~ 18371115 (+) | False | XLOC_020346 |
| TCONS_00040391 | mRNA | downstream | 143852 | 18319230 ~ 18387919 (+) | False | XLOC_020346 |
| TCONS_00040377 | other | upstream | 342026 | 17824459 ~ 17824573 (+) | True | XLOC_020339 |
| TCONS_00040371 | other | upstream | 559262 | 17606588 ~ 17607337 (+) | False | XLOC_020337 |
| TCONS_00040360 | other | upstream | 716333 | 17443345 ~ 17450266 (+) | True | XLOC_020332 |
| TCONS_00040335 | other | upstream | 1527174 | 16639310 ~ 16639425 (+) | True | XLOC_020322 |
| TCONS_00040326 | other | upstream | 1863271 | 16302317 ~ 16303328 (+) | True | XLOC_020314 |
| TCONS_00040385 | other | downstream | 71914 | 18247292 ~ 18280440 (+) | False | XLOC_020344 |
| TCONS_00040386 | other | downstream | 77780 | 18253158 ~ 18280440 (+) | False | XLOC_020344 |
| TCONS_00040387 | other | downstream | 79391 | 18254769 ~ 18254855 (+) | False | XLOC_020344 |
| TCONS_00040420 | other | downstream | 1061653 | 19237031 ~ 19238226 (+) | True | XLOC_020360 |
| TCONS_00040469 | other | downstream | 1596320 | 19771698 ~ 19771812 (+) | True | XLOC_020380 |
