Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_021624188.2 |
| length | 1459 |
| RNA type | mRNA |
| GC content | 0.41 |
| exon number | 4 |
| gene id | LOC110537797 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_048576.1 |
| NCBI id | CM023230.2 |
| chromosome length | 102853256 |
| location | 55281731 ~ 55285435 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| species | rainbow trout (Oncorhynchus mykiss) |
| id | name | namespace |
|---|---|---|
| GO:0031118 | rRNA pseudouridine synthesis | biological_process |
| GO:0019013 | viral nucleocapsid | cellular_component |
| GO:0005730 | nucleolus | cellular_component |
| GO:0005732 | small nucleolar ribonucleoprotein complex | cellular_component |
| GO:0030515 | snoRNA binding | molecular_function |
| id | description |
|---|---|
| K11129 | NHP2, NOLA2; H/ACA ribonucleoprotein complex subunit 2 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU1238664 | lncRNA | upstream | 76086 | 55189750 ~ 55205645 (+) | True | G1088894 |
| TU1238657 | lncRNA | upstream | 84791 | 55193535 ~ 55196940 (+) | True | G1088887 |
| TU1238837 | lncRNA | upstream | 167218 | 55114194 ~ 55114513 (+) | True | G1089056 |
| TU1238791 | lncRNA | upstream | 253843 | 55027664 ~ 55027888 (+) | True | G1089013 |
| TU1238789 | lncRNA | upstream | 256658 | 55024808 ~ 55025073 (+) | True | G1089011 |
| TU1238944 | lncRNA | downstream | 39174 | 55324609 ~ 55325524 (+) | True | G1089159 |
| TU1238977 | lncRNA | downstream | 90690 | 55376125 ~ 55398473 (+) | False | LOC110537800 |
| TU1238978 | lncRNA | downstream | 90829 | 55376264 ~ 55398473 (+) | True | LOC110537800 |
| TU1238984 | lncRNA | downstream | 100723 | 55386158 ~ 55387520 (+) | True | G1089196 |
| TU1238994 | lncRNA | downstream | 129891 | 55415326 ~ 55415809 (+) | True | G1089206 |
| XM_021624187.2 | mRNA | upstream | 11570 | 55257434 ~ 55270161 (+) | True | LOC110537796 |
| XM_021624183.2 | mRNA | upstream | 33872 | 55209730 ~ 55247859 (+) | False | LOC110537794 |
| XM_021624182.2 | mRNA | upstream | 33872 | 55209731 ~ 55247859 (+) | False | LOC110537794 |
| XM_021624184.2 | mRNA | upstream | 33872 | 55228832 ~ 55247859 (+) | True | LOC110537794 |
| XM_036937831.1 | mRNA | upstream | 72099 | 55065122 ~ 55209632 (+) | False | LOC110537795 |
| XM_021624193.2 | mRNA | downstream | 90586 | 55376021 ~ 55398512 (+) | False | LOC110537800 |
| XM_036937833.1 | mRNA | downstream | 90759 | 55376194 ~ 55398512 (+) | False | LOC110537800 |
| XM_021624194.2 | mRNA | downstream | 91145 | 55376580 ~ 55398512 (+) | False | LOC110537800 |
| XM_036937834.1 | mRNA | downstream | 113540 | 55398975 ~ 55413298 (+) | False | LOC110537801 |
| XM_021624195.2 | mRNA | downstream | 113719 | 55399154 ~ 55413298 (+) | False | LOC110537801 |
| TU1237658 | other | upstream | 1001010 | 54274306 ~ 54280721 (+) | True | LOC110538908 |
| TU1237606 | other | upstream | 1132769 | 54109690 ~ 54148962 (+) | True | G1087914 |
| TU1235839 | other | upstream | 2624236 | 52649604 ~ 52657495 (+) | True | G1086237 |
| TU1231639 | other | upstream | 5600927 | 49679023 ~ 49680804 (+) | True | G1082266 |
| TU1231371 | other | upstream | 5981384 | 49291405 ~ 49300347 (+) | True | LOC110537713 |
| TU1241153 | other | downstream | 1440172 | 56725607 ~ 56726003 (+) | True | G1091217 |
| TU1241171 | other | downstream | 1466983 | 56752418 ~ 56752947 (+) | True | G1091235 |
| TU1241421 | other | downstream | 1830390 | 57115825 ~ 57117927 (+) | True | LOC110537831 |
| TU1241907 | other | downstream | 2614036 | 57899471 ~ 57914832 (+) | True | LOC110537841 |
| TU1241903 | other | downstream | 2930720 | 58216155 ~ 58222190 (+) | False | LOC118937686 |
