RNA id: TU1238977


Basic Information

Item Value
RNA id TU1238977
length 1530
lncRNA type sense_over
GC content 0.43
exon number 4
gene id LOC110537800
representative False

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 55376021 ~ 55398512 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGAATGCGCCCACTGCTTGGGCGCCCCCTATTTATACATTAAAATCGCTCACAGGTGAGCTGACTACAGTGATGACCATGTCCCAGTGAGACTGGGCAGGGCAACCTGGcccagaggaggagtggaggtgcCAGAGAAGCTCTGCCAGTCACAATTAGATTGAAGAACAGATAGAGGGACACGCCCCTTCCCCTCAACACTGCCCACCACCTCGCAACCATGCATGGTTTCACTGATCGAGCATCTGCAGAAACATAGTCTGGACAGCAACGCTCACCAAAGGGCCCTAAACGTGTTTCTGCTGGACCCCAACAACCTAGGAATTTGCTGGCCTACAGATGGATTGATGCCTGACTCGCAGTACAGACCCCTTGAGTGGTATGGCGCGTGGGAGGCTGGCTTGTGGAGGGGACGTTTGCATGGGCTTTGAGCCTTTTTTGGGGGACTTCAGAGGGTCGTGTTCACCAGAGGGGCTGGGAAGGACAAGCATTGGTCCTCTAAGCGAGAGTGacgaggagggggaagagggggaggaagaccCTGATCGAGAAGAGTGTCAGCCAAGTATCTTTGAGAGGGATTGTACAGAATTAGATTTGAGCCTAATTGAAGAAAATTAAAATGTTGTTAATTGGAGACTGTTTTCCCCTTTACCGCCAGCATTCAACACTCCACTCCCAGCCCTGCTGTACTTCATCGGCAGGGCTCTCAGGAACATGACTTCTCTCTCATGGGAAGAGCTGGGGTATATATAATCTCATTGACAATGGTCATGATTTGACTACTACCAATAATAACAATTAATTCAGGTAGCCATGGATGCTGTCCTTCCATCAGAGTACATTCCAGAACCAGTTGCTGAAACATTGTGAATAATCTGAATGCTGGAGATGCCAGCTATTCCCATAGTGTCTGTTGGATGTCTTCATAATGCACCCTCAGACTGATGGAATTTTGGAAGAATAACAAGCTTCTGGTCACTTGCTTTCTTTTACATTACTTTtcttttaattgtatttttgttgGTGCAGTAGTAAGAATAGACTTGAATGATGTTGGTGAATTGAATATCTGTTTTGTTCAGTTTGATGCAAAAGAGCAGTATGTCATTGCAGTTTTCTTTCTGCAGTCCTGTTATTTTCTGTTAAACAATCCATATGATTCAGCATAAGCCTTAAGATACCTTTTTTTCtgtaaacaaaaaaatacaactatGAAAAGGTAATGAATTGTGTAGCTGTTGCTATTAGTCCTTTCATTGTTTCTTTTATATATATGACTCATCTTCTGAAAATAGAGATGTATTGATAATGAATGCACTGTTTGACAAGTTAACCTAAAAATGGAAGCAACCACTGTATTCTGAGGGCACATTGTAATATTGTATTATACAGCGATCATTTGTTGAAAACAAGTTGTGTAAAGATGGTACCTGGGAGACCTGGGGCAGGCCATGGCTGTCTTttagacatgtttttttttttattgtatgtgtttaaaaaaaagatgGCAATTTCAAACTCAGTTTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1238944 lncRNA upstream 50601 55324609 ~ 55325524 (+) True G1089159
TU1238664 lncRNA upstream 170480 55189750 ~ 55205645 (+) True G1088894
TU1238657 lncRNA upstream 179185 55193535 ~ 55196940 (+) True G1088887
TU1238837 lncRNA upstream 261612 55114194 ~ 55114513 (+) True G1089056
TU1238791 lncRNA upstream 348237 55027664 ~ 55027888 (+) True G1089013
TU1238994 lncRNA downstream 16853 55415326 ~ 55415809 (+) True G1089206
TU1238997 lncRNA downstream 22398 55420871 ~ 55425203 (+) True G1089209
TU1239080 lncRNA downstream 115157 55513630 ~ 55515131 (+) True G1089284
TU1239076 lncRNA downstream 121101 55519574 ~ 55521811 (+) True G1089281
TU1239643 lncRNA downstream 271131 55669604 ~ 55670058 (+) True G1089812
XM_021624188.2 mRNA upstream 90690 55281731 ~ 55285435 (+) True LOC110537797
XM_021624187.2 mRNA upstream 105964 55257434 ~ 55270161 (+) True LOC110537796
XM_021624183.2 mRNA upstream 128266 55209730 ~ 55247859 (+) False LOC110537794
XM_036937834.1 mRNA downstream 502 55398975 ~ 55413298 (+) False LOC110537801
XM_021624195.2 mRNA downstream 681 55399154 ~ 55413298 (+) False LOC110537801
XM_036937835.1 mRNA downstream 681 55399154 ~ 55413298 (+) False LOC110537801
XM_036937836.1 mRNA downstream 1493 55399966 ~ 55413298 (+) True LOC110537801
XM_021624196.2 mRNA downstream 53121 55451594 ~ 55455336 (+) True LOC110537802
TU1237658 other upstream 1095404 54274306 ~ 54280721 (+) True LOC110538908
TU1237606 other upstream 1227163 54109690 ~ 54148962 (+) True G1087914
TU1235839 other upstream 2718630 52649604 ~ 52657495 (+) True G1086237
TU1231639 other upstream 5695321 49679023 ~ 49680804 (+) True G1082266
TU1231371 other upstream 6075778 49291405 ~ 49300347 (+) True LOC110537713
TU1241153 other downstream 1327134 56725607 ~ 56726003 (+) True G1091217
TU1241171 other downstream 1353945 56752418 ~ 56752947 (+) True G1091235
TU1241421 other downstream 1717352 57115825 ~ 57117927 (+) True LOC110537831
TU1241907 other downstream 2500998 57899471 ~ 57914832 (+) True LOC110537841
TU1241903 other downstream 2817682 58216155 ~ 58222190 (+) False LOC118937686

Expression Profile