RNA id: TCONS_00005861


Basic Information

Item Value
RNA id TCONS_00005861
length 538
lncRNA type antisense_over
GC content 0.48
exon number 2
gene id XLOC_002032
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 17583381 ~ 17587877 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGCTGCCTGAAATCTCACTATCAGAGTCCGAGTCCGAGTCAGAAATGGCGGTGGACAGAGATGATCCCGATGGACGTTTGGTTTCCGGCGTCTCTGGAATGACACTGTCTGACTCTGTAACCGGGGGCTCCTCATGATCTGAGGATGATGCTGGTCCTTTCTTTCTCCTCATTGTTCACTCGACGCGTTAGAAAAACAGCTCAATCCACTTTCGCGCATAATGTCACGCATCTCAATCGATACACTGAGCCACATCTGACGCGTCGCTGCCCGAATCCACCATCTACAACCCGCTTTCAGCTGATTTGGGGACCATAAAAGCAGCTGACTATAACAAAGAGTTCACCGGCGAGCTAATAAATGATCGCTTTGTCAATAATCAGCCTCTAGTCGGTTTCGGCCGCCGCTAATGAACAGATAAACCTGGTTAACTCCGGCCATTAGTCTGCGTGACGTGTGTCTGAGATATTTCACCGCTTTTGTTGTTTGTACGGTATTTAATGAATGAAGACAGTTCTGATCAAACGCTAACCGGTTG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005855 lncRNA upstream 85609 17459798 ~ 17497772 (+) False XLOC_002031
TCONS_00005854 lncRNA upstream 96012 17459657 ~ 17487369 (+) False XLOC_002031
TCONS_00005858 lncRNA upstream 96012 17459926 ~ 17487369 (+) False XLOC_002031
TCONS_00005859 lncRNA upstream 96012 17459939 ~ 17487369 (+) False XLOC_002031
TCONS_00005857 lncRNA upstream 115083 17459926 ~ 17468298 (+) False XLOC_002031
TCONS_00003942 lncRNA downstream 81796 17669673 ~ 17674093 (+) True XLOC_002033
TCONS_00003948 lncRNA downstream 128072 17715949 ~ 17721131 (+) True XLOC_002036
TCONS_00005862 lncRNA downstream 419246 18007123 ~ 18024486 (+) False XLOC_002042
TCONS_00005700 lncRNA downstream 419278 18007155 ~ 18071506 (+) True XLOC_002042
TCONS_00005863 lncRNA downstream 652673 18240550 ~ 18282435 (+) False XLOC_002043
TCONS_00003937 mRNA upstream 149503 17235370 ~ 17433878 (+) False XLOC_002023
TCONS_00003938 mRNA upstream 150773 17371356 ~ 17432608 (+) True XLOC_002023
TCONS_00003932 mRNA upstream 482562 17088261 ~ 17100819 (+) False XLOC_002018
TCONS_00003931 mRNA upstream 520835 17026870 ~ 17062546 (+) False XLOC_002016
TCONS_00003930 mRNA upstream 520835 17026870 ~ 17062546 (+) True XLOC_002016
TCONS_00003941 mRNA downstream 4396 17592273 ~ 17674345 (+) False XLOC_002033
TCONS_00003943 mRNA downstream 93197 17681074 ~ 17691171 (+) True XLOC_002034
TCONS_00003945 mRNA downstream 125145 17713022 ~ 17726406 (+) False XLOC_002036
TCONS_00003946 mRNA downstream 126989 17714866 ~ 17728165 (+) False XLOC_002036
TCONS_00003949 mRNA downstream 160003 17747880 ~ 17759878 (+) True XLOC_002037
TCONS_00003940 other upstream 128809 17454490 ~ 17454572 (+) True XLOC_002030
TCONS_00003939 other upstream 129878 17453363 ~ 17453503 (+) True XLOC_002029
TCONS_00003936 other upstream 455933 17127316 ~ 17127448 (+) True XLOC_002022
TCONS_00003935 other upstream 457915 17125340 ~ 17125466 (+) True XLOC_002021
TCONS_00003934 other upstream 459881 17123368 ~ 17123500 (+) True XLOC_002020
TCONS_00003944 other downstream 107388 17695265 ~ 17695340 (+) True XLOC_002035
TCONS_00003947 other downstream 128029 17715906 ~ 17721131 (+) False XLOC_002036
TCONS_00003954 other downstream 302212 17890089 ~ 17890203 (+) True XLOC_002040
TCONS_00003957 other downstream 652921 18240798 ~ 18251068 (+) True XLOC_002043
TCONS_00003963 other downstream 1304170 18892047 ~ 18896604 (+) True XLOC_002046

Expression Profile

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