RNA id: TCONS_00040391


Basic Information

Item Value
RNA id TCONS_00040391
length 7390
RNA type mRNA
GC content 0.43
exon number 12
gene id XLOC_020346
representative False

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 18315490 ~ 18387919 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACTTTTGCATGAAATAACAAAAGTCAACATGttaatgtatgtatgtttatttttacgTTTTGACAGCACACTACCAAGGTTTTAGCTTAAGAAAAGTTAGGAAATTAGTATTTAGTGGAAACCCCAAATTTCCAATGAcgtcaaataaaaacatttgttttttcttaaGTCTTTCAGCAAAAAAGAGATCTAATAAGATTAattgatacattttaaaaatggtttactCAACCTTGTATTCCAGTATATCAAGAAAGCTTTTAAGTGGTCTTTTTATGTTTTGGAATGGTGAACATAggataaaaaataaagtgttaggaTGCTCTTCCTCAAGCAAGTCCCTCTTCATGGGCCAGTGCGCTTCTGCGCATGCGCGGTGCGGTGACTCGGGTCCATGTGTAGGCAGCGAGGATCTTTATTTGGCGACCGGAGCGGCAGCGGGCAGGGCAGATAGACAGAGGGGATCCCCGGGATACTTTTACAtcaaaaatactgtggtaaataaCAACAACCAGACGCGTGGAGGGCCCTCAGTAGACCAATAAGCGTTTCATCTTCTCAcaacaacaaaaaaagaaaccagTGTGGAACTGTGGATGGTGAGAAGATGTCAGAAGACGCGGGCCGTCAGACGCGCAGTCAGAAGCGTGCGCTGGAGAGAGATGTCCCTACTCCAGAAACGGATGTTAAGCGGGTCAAgctggagagaggagaacctggAGCTGTAGATGGACTCAAGACCAAAAGCGAACAGGCCAACAAGGTGGCGAACATCCTGCGGGCCGGAGAGGTGAAGGCCACCATCAAGGTGGAGGTGCAGACCAGCGACGAGCCCGTGGACATGAGCACATCCAAGAGTGACATAAAGAAAGAGCGACCTTCGACACCAGATGATGATGTCATTGTTCTGTCAGACAATGAGCCTTCTAGTCCTTGTATGAATGGGGTCAGCTACACTTTTAAGAAGACTGATACTGATATGTTAATGAAAAGCAGCCCGGCCGAACGTACACACATCATCAAGCAGCTGCAAGAAGAGCTGCGTCTGCAAGAGGCCAAACTGGTCCTGCTGAAGAAACTCCGGCAGAGTCAGATCCAAAAAGATGCTGTGCAAAAGTCAAGCAATTCTGTGGCTGCTCCTCCACCTCTCGTCCGGGGCAGCATCTCGTCCACTAAAGGACCCCTACAGGTCTCCAACCGAAACTCAGGGACAGTCATTCCTCCTCCTCTGGTTCGAGGTGGAGCGCAGGTCTCTAAGCACAGCACCCATAACACTGTAGTCATGCCACCTTTAGTCAGAGGCTCACAGCAGATCGCTACTTTacggcagcagcagcagcagcagcactcGGGTTCCGGTCCTCCTCCTCTACTTCTGGGCACAAGAACATCTGTACCCACTGTGCAAGTGCAGGGCCAGAGGATCATCCAGCAAGGCCTGATCCGTGTGGCCAGTGTAGGCAATGCAAACGTCCTGGTCTCTCAGGCCTCTTCAACTGGTTTGAAGACCTCTCAGTCTGGTTTGGGCAGCAGCTCTTCCAATGCCAATGACTCTCCTGCTAGCCGACAGGCGGCTGCTAAGCTTGCTTTACGGAAACAGCTGGAGAAAACCCTGCTTGAGATCCCACCTCCTAAACCTCCAGCGCCAGAGCTCAATTTTCTGCCCTCAGCAGCCAATAATGAGTTCATTTACCTGGTTGGGCTTGAAATGGTCGTCCAGAACCTGCTAGACACGCTGGCTAAAAGTAAGCATCAACAGAGTGATTCTGCTTCCAACACGGCACCCAAGGAACCCTTCACATGCGCCCAGTGCCAGACGGACTTCACCTCTCGCTGGAGGCAGGAGAAGAACAACGGCTCTATCCTGTGTGAGCACTGCATGAGCTCCAACCAAAAGAAGGTGCTGAAGGCCGAGCACACCAGCCGACTGAAGGCTGCCTTCGTCAAAGCCCTGCAGCAGGAGCAGGAGATCGAGCAGCGCATTCTGCAGCAGGCCGCCTCACCCAAGACCACCACCAcctcctcttcatcctcctcaTCCTCGCCCGTTATTAAAGCCGAACACGTGCTGGTGTCGCCGCAGTATAAGCAGGTGCGCGCGTCACTGCCCCAGCAGACCAACAGGGGTCACTACCACACCACAACCATCAAGCAGACTCCAGGCCAGCTGTCCCGCACCGTGCAGCAGGTGGTGAATGCGGGCGCACGTGTGAGCCACAGCTTCTCCACCTCCTCTCAGCTCCAGAACGCCGCCACGGCCGCCGCGCTGGTCAGCAGGCCAGGTAAGCATGCTGTGAGGGCAGGGGAAAAGGGCACCAGCAGCAGCAAAGCCACCACCAATACCTGGAGGAAACAGAACAGCGGCACCACAGGTGTCACCATGGCTTATGTGAACCCCAGTCTGTCCGTGCACAGGACGACGTCTCCGGTGGACCGTCAGAGAGAGTACCTCTTGGACATGATCCCTTCCCGCTCCATTTCCCAAACGGCAAACACATGGAAATAATGCTCCAATGAAAAGATTCTCTCAGTTATAATTCTGTCTTTTTGGACGTTCGGTCGGTTTTCGGTAACAGACAACCTGCCGTTAagcaataataaaatgtaaaaaaggaaaaaagaaaaaaaaagaaaaaaaagctatattttctctccatctctcctttGTTCCGAGACCCTTAGTTTGTACAGTCACAGGTAAGACCCCATAGGTTAACTAATGGAGGAGCTGTACCAGGATCAGTGAGCAAGGAGAAGCAAGGACCTTTTCTTCAGGCCTTCGAATGAATCCATCTACTGAATCCCTCCATTACCCAACGGGCTTTAGCTATCTAATACACATCCGCAGCGATGACCCTCAATTTACGGAGAAATTGCTCCATCAAGTGAAACTAAAGCCTCCATTAGGCGTTTTTAGAAGCTCGTGGACACTTGGGATGGAGGACACAGGACCGTGGAGTTCCTACAAGACGCTAGAGATTGTTTTATGACCTTTCAGTGGACCATCTTTACGCTTTATCTACCCGCAGCGTCTCTTGAACAGATACgggagtttatgtttgtgttttttttttccgtttgtttgtgttttttagctTCACTGTGGACTCATTCCACCCTTTTGGAAATGGCCTTTTTTGAAAGGCCGCGAGTTTAAGAAATTGTTATTTGTCGTTGAGGTGGTTATACATCTGCTGGTGtagtgtgtatttttaaataatttgggttgttttcttttctttgtaaGCTTATAAAAGACATTTAACCAAGAATTGTGCATCAGGGATGGTTACAGAGATGGACATAACTAACATAAATAAGCAGCAGCCGCAACAGGACTACTAATAGATCatcgtctttctttttttctttttgtttgagcGATTTGATGAtagctctttttttattttacagaaacaAGTTACGCATTTAGTTACCATTGTGATGTGCTTCCCCTTTAGGCTTTCTCGCAGCAGCATCTAGGCATTATTTGGATGTTGTGTTatttataaatgtcactttagatgaAGGATATCCCCATAGCTCCTTCCCAAATAGATTAAGAAGGTTGTGAATTGGAGATCGGACTGTGTTTAGGGTGTTTGAATGCTTCAAAATGTCCTGTCTTCGATCCTGTTGGAAGTCATGGCTTAATCGTTCCTTAAAGGAAATTCTGGGATTGAAAGCATTACTGCTTATTGAATGTAGCACAGGATCTTAGCTAAATGAACTTAAGTCCTACCTGTTAGGTGGtggtcatgttgttgtttttttttgtttttaccatcTTTCGTTTTGCTTTCATCTGATTTGATTCGCTAGGAGTATGCTCTGGATTTTTGCTGAGCAGTTATGTATGTTATAAATGACAGCTCGGATCACTTAGTCAAAACAGTCCAACGAACGTGTCAATCGATTCGATCTTTTCGATTCCCCTCTCTCGGTCGGCGATCTTAAAAGCCTGTGGAAATTTTTTTGGTCACAGAtaccccgttttttttttttttttttaatgctgttcTGACTACTGCCTGCTGCTGACAACTAACACCATTCCATTTCCCCCTCGGATGCTGCCGTCGTTTATTGTGTAGCATCTCTTTtatgaattgtaaaaaaaaaaaaaaacctttttttttcatctgtttcTGCTCTATcagttaataattataataaaaactaattttaacctGTTTCATCTGAcgtgtgggtgtgttttgagtgtaAATTGCATTTTGCAAAATGGTGGGACACAATTTAATCAGGTTTCAAGTGTTTGAAAGGATGTGAAGTAGCCTAGTCAGGGTGGATGACAGTAAGTTTTATGTGAATGAAAATGTAAtaggttatttatttttagagGAATACAATTTCTCCCGTCTACTGGCTGCTCTatcaaatggttgaccatgttttgactgttgtaaataatgactgttgaagtcatttaaagaattgTTTAACCTCTTAGGGCTTGAGCGTCAACATACGTGGACAGGTCATTTGAGCTTTTATGTGGCtacttaaaatactttgaatgttgtATATTTTGTTACTGAtagtcatcctgcaactgttttgcagcatatgaaatgtcccagaccctatttttaactgtccaaaatgggaaaaATTTTTGGTTTTACTCTCTGACAGTcaaagaaagttaaaaaaaaataaataattctatgttatatatgcattaaaaacagccaggaaaaagtgttttatgtaaattcggaccacgagtccacatatatggacatcatttttctctaaaagtacatatTAAAGGATGATACATACATAGGTTTTAATCTAATTAGATTCCAAtgagcccaaatagcaaagagaaataaaaaatgcatgtacaaAAACACCCTGGGCCTTAAGATGGTTTACACGGTTTGGTTAAACATGGTTAAATAATGGTTTCttccagtggttcccaacctttttttgcctgagacccccttttcccccaGAAAACATTGTATGGCACCCCTGCACATTTAATATTATCACTCACATGGTTTGCAGTAAGGATGACAAAAAATTTGTTTTCGAACAAACGGTTTGTTTATTAACtgtctagatatgtttatgcacaaataatagcctaatgtaagtTCTAAAAGTAAAACATCAGTAGGCCCTTTGatttgtaactgaaaaatgtAAGCCTTTGGCCTTTTAAATTGGCCCTATATTATTTGCCAATTAGGTGCCATTTTTTTCCATCTAATTTTGGGCATGTAAATTCTTTTTCTATGGGCTCAAAAATGCCATGGGCTTGTTGCAATATTAAAGATGAGTCGTCTGCAAATGTCATTAATTCGGCCTCTTGCATTCATTAGCAAGAAATTTGGCGCAGATAATGCATTGTTGCTGGGTCAGGGATTCTTTGGgaaaaaaatggaataaaaccaAAGTTCTGGTAACTGTCTTGGTATTTTCCACATTTCCTGTTTCCTATATTGCTAGTGCTGCAACCCGAAATGTGTGCCGCTCTTTATTGAGACTCTTTATTGTGGAggacgaattacaaatttgtcaattGTTTTGGTCAACCAGGATGGTCAAATGATCTAAGGCAACATGATCGCCCCCCCCgaccaaatataaaatataaatgtaaactcAAATATACAGACACACCATTCCAACATGAATAGATTTTATTAATTTGCAATCCAACACATGGTTTTATGAGTTCTTGTGCTTTAGCTCTGCAGCCAAGAATGTCCGGCCACCTGTTGAATAGTTGGCCTTGTGGAAGGATTTGTCTGGAGCAGAGTTCTGATAAACACCCGGCATGGTTCCTCAACGGCGACATTACTTGGATAATTCAATGGTCTCTGCTGAAGAAGGCGAAGTCGTCTGACGTTGGTTTCATCGTATGGCATTGTTCCAGTCACCATGACATACAGAATCACCCCAAGGCTCCATACGTCATACTTCTTTGGATCATACGGCGTTCCTGTGATGACCTCCGGTGGAGTGTAGGCCCGAGATCCACAGAAGGTATGACTGAGCTCTGAAGGGTCTTCAACGAATCGAGCAAAGCCGAAGTCTGCAATCTTAATTTTCTCATCGGCTGTTAACAGTATGTTTTCACACTTCAGGTCTCGGTGGACAATGTTCATCTGGTGGAGGTAGTTGATAGCGCTGACCATCTGCGCAAACATGGTTTTACTTAGGTCTTTAGGAATATGATGGACCTCATGTATCTTCTGAAGGAGATCTTTCTCCGCAGCCTCCATCACGATGCAGAGTCGCTTTCCCGCCACCTCAATGCATTCGAACATTTGGATGATGTTCTCGTGATTCACCCGTCTCAAAACCGCCAGTTCCCTTGGGAGAAACTTCTGGATGAAATCCGCAGAGCCCCTCATGCGGTCTACAATTTTGATAGCCACCTTACAGCAGTGCTTCTGCGAGGTGGCAAGCTTGACTCGAGAAAAGGAGCCTTCACCAATTGAGGTGAGGAAAGTGTAGCCCATGCCTTTCAAAACGTTGTTAATAGACATTTTGTCTCAACAGATGTATGCTACAATCTCAGGAGAACTGTCAAGCTTGAGTTTGCACTGCATTCCTCACCCATGTCATAAGAATGTGCATTCTACTGTGTTCTTTAAGCATTCTATTCTATGATGTCATCATAGATCATTCTACAGGTTAAGAATGTTGGAAGCAGTAATTTAGGCCTCTGTTATCTGTACTCAATTATTTAATCACAATTAATGCATAACATGGACCTATTTCCAccttttattagcattttaagcGATCTGATCAAGTGGTCAGCTGAAATGCTTAACCTGGTCCATGGTGTTAACAAGCACTCAAATGTTTGAGTCATTTGATCAAATGAGTATTTACACTATGAAATCAATCCACTCAAGTGTTTTTGACTTAAAAGCTCTCTGTTTTAGACCCCGTTTACACGTGCCTTTAGTGTCCTCTTGTGTTCAGATTAATGAGAACAATAATAACAGATGAAAATGAACGTGATGTTGGTTTCTGCCTCGGAGTAAAATATATAGGAGAGTGTAACTAGTCTAGATCCACATATATAGATCTTTATTGTTTGCAGTACAACTCAATGTTAAACTCTTTCATACTTTTAAACTTTGTTAAAAAGTAGTAATTACAATCCTAAGcctattttaatgtatataaaacgAATAATTTTGCTTTACATTTGCCTGCTTTGcttaaaaaataacaaagtaacaaaTTTGTTACTTCAAAGCGacttaatattgtatttttcattcattaattttctttttggcttagtcaataataaataatagagtTGACTCTAGAGTGATTGAGGTGAGTTTCATGAATGGAACCTTCCTGACTAAAGATATATAAAGATATA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0016581 NuRD complex cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-2372 Predicted to enable sequence-specific DNA binding activity and zinc ion binding activity. Predicted to be involved in negative regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Predicted to be part of NuRD complex. Orthologous to human GATAD2A (GATA zinc finger domain containing 2A).

Ensembl:

ensembl_id ENSDART00000184747

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00042123 lncRNA upstream 14942 18253157 ~ 18304288 (+) False XLOC_020344
TCONS_00042127 lncRNA downstream 172424 18560343 ~ 18569388 (+) False XLOC_020351
TCONS_00042128 lncRNA downstream 172424 18560343 ~ 18596258 (+) False XLOC_020351
TCONS_00042129 lncRNA downstream 177652 18565571 ~ 18569388 (+) True XLOC_020351
TCONS_00041895 lncRNA downstream 1451356 19839275 ~ 19839592 (+) True XLOC_020382
TCONS_00042130 lncRNA downstream 1623877 20011796 ~ 20050276 (+) True XLOC_020383
TCONS_00040383 mRNA upstream 102742 18187857 ~ 18216488 (+) False XLOC_020343
TCONS_00040384 mRNA upstream 112881 18188045 ~ 18206349 (+) True XLOC_020343
TCONS_00040382 mRNA upstream 144065 18166660 ~ 18175165 (+) True XLOC_020342
TCONS_00040380 mRNA upstream 158961 18156087 ~ 18160269 (+) True XLOC_020341
TCONS_00040379 mRNA upstream 158996 18156000 ~ 18160234 (+) False XLOC_020341
TCONS_00040394 mRNA downstream 1352 18389271 ~ 18464654 (+) True XLOC_020347
TCONS_00040395 mRNA downstream 81085 18469004 ~ 18485470 (+) False XLOC_020348
TCONS_00040396 mRNA downstream 90015 18477934 ~ 18485462 (+) True XLOC_020348
TCONS_00040397 mRNA downstream 109840 18497759 ~ 18498645 (+) True XLOC_020349
TCONS_00040398 mRNA downstream 142476 18530395 ~ 18534262 (+) False XLOC_020350
TCONS_00040385 other upstream 38790 18247292 ~ 18280440 (+) False XLOC_020344
TCONS_00040386 other upstream 38790 18253158 ~ 18280440 (+) False XLOC_020344
TCONS_00040387 other upstream 64375 18254769 ~ 18254855 (+) False XLOC_020344
TCONS_00040381 other upstream 143852 18166599 ~ 18175378 (+) False XLOC_020342
TCONS_00040377 other upstream 494657 17824459 ~ 17824573 (+) True XLOC_020339
TCONS_00040420 other downstream 849112 19237031 ~ 19238226 (+) True XLOC_020360
TCONS_00040469 other downstream 1383779 19771698 ~ 19771812 (+) True XLOC_020380
TCONS_00040470 other downstream 1405200 19793119 ~ 19793233 (+) True XLOC_020381
TCONS_00040472 other downstream 1751606 20139525 ~ 20139592 (+) True XLOC_020385
TCONS_00040475 other downstream 1764006 20151925 ~ 20151981 (+) True XLOC_020387

Expression Profile

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