RNA id: XM_036937905.1


Basic Information

Item Value
RNA id XM_036937905.1
length 2212
RNA type mRNA
GC content 0.45
exon number 6
gene id kctd13
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 59350779 ~ 59389927 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aaagtggtgatcctaactgtgaaactgagtttaaaagtatttggctgaggtgtatatgtaaccttccgacttcaactgtatgtgtgttattTATGTATACCAGTGTTTCCCAATATTTTATTCTAGGATCACTCAGGCTTGCACATTTTTGTTCCTGTCTAGCACTACCACACTTTGTACAACTAGGCAACTAATGGTCACGAATGTTGCGAATCAGGTTTGCTAATGCTGGAAGAAAACATGTAGTCCTATGGGAGCCAAAGGAACGGATTGGAAACACTGGGCTGTGTTCAGCAGGACATAACGGCTGGGTAGTGTTGGACAGGTGTGGTCGCCATTTTGGCTTGGTGCTGAACTTTATGCGGGACGGCTCGGTACCGCTTCCGGAGTCCCACCGAGAGCTGGAGGAAGTTCTGAAGGAGGCTCAGTACTACAGGGTCCAGGGGCTAGTCCAGCACTGCACGTCTGCCATGCAGAAACAAAGGGATGTCTATGAGGGGGTTTGCCGCATTCCCATGATTACCTCAACCAAAGAAGAACAGAGAATGATAAACACCTGCAGGAAGCCTGTAGTAAAACTACAGAACAACCGAGGGAACAACAAGTATTCGTACACcagTAACTCGGACGACAACCTGCTGAAAAACATTGAGCTGTTTGATAAACTGGGGCTGCGCTTCAACGGGCGTGTCCTGTTTGTCAAGGACGTGCTCGGGGACGAGATCTGCTGCTGGTCCTTCTACGGTGAGGGCCGCAAGATCGCTGAGGTGTGCTGCACATCCATTGTCTACGCAACTGAGAAGAAACAGACCAAGGTGGAGTTTCCTGAGGCCCGCATCTTTGAGGAGACCCTCAACATCCTCATCTATGAGAATGGTCGTGGTTCTGGCCCGGGGGGCGTGGCCCTTTTGGAGTCATCATCGCCTGGGGCCAGCCAATCAGAGGAGGAGGGGGCCAGCGCAGGGGACCGAAGGGTGAGGAGGATCCACGTGAGGAGGCACATCATGCACGACGAGAGAGGACACGGCCAACAGACTGTGTATAAGGACTGAGAAAAAAGAGTGAACTgtggggataaagagagggagtTAGCGGCAGGGTAAAGATACAGGTTGTTTGGCGGCGGGGTGTTTGCATGGAGAGGTTAGGGCGGATGTTTAGTAGGGGGCGTGGGACAGGTTCTTATATAAGGAAGCAGATGTGGGACTTCAAGATGCTTATTATCAAGGACTgagatattattattttttggtgCCCGATTGGGAaaacaacccctaacccaaaaGGTGGGACTAATACACTAATGAATGTGCACAATTATGGGAGAAAGGTAGCGAGAATTGGAACACAGCATTGGTCTGCAAATACCTAGGGGCTAGATTGGGCTATCTCCCGACCAGGTTTGGGTGGTGGTAATGTGACTGGAAGATGGAGGGGTTCACTGGTTCAACTAAGGTACTTTAACTGCACTAAAAGGGAACCGGGATGGTGGAGTGAGGTGGTGGTAGTAGGTTAGAGACAACGAGACTGCTGAGCATTGCTGGATGTTTATTCCTTTTGAATTGATTACTGTTGTATGTATTTGTCtctatttattattatttggtTAATTTGTCCTTTTATATAACtttaaatacattatttattatttattctgTATAGATGTTGGTGGGAATTGTATGTGTTGAGGGTGCTGATCTGATTTGATATTTTGACCAGTTTATGCACTGATCACTTTCCTAACCGACACTTGATGCCATGCTCATCCATGGTCATGTTTAACTGCCATGTGAGTTCATGTGTACACATTGACTTGCTAAATcatgttttaatatttttttgtccATGATGCTACCGTGCCTAATTGAAACAGGATTTCATGTTGTCTGATGGTGAAATCAGGCTTTATTTGGCTCTCTAAAAATCATGTTTAAGTCTTTGTATTCAATTTGGTACATATTGCTTCCTCGCACTAAAGTCTgatcacaaaaaaaataaaaaataacaggtGAAATGAAGGAAGTGATCCGAACCTGGGAAGTGTTTTATGTCCCATGGGTTATTGGACACTTGTTAACCCATAGAAGCATGTAATCTGGCAGGTAAATCTCACATCCTAATTCCCGTCAAATGTTCTTTGTGATATTGTAACTATCTGGGGTTTTGGATATTTTATGGACCATCAACATTCTCAATAAAAATCTAAACCCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1244054 lncRNA upstream 152646 59211790 ~ 59212987 (+) True G1093874
TU1244000 lncRNA upstream 222122 59143278 ~ 59143511 (+) True G1093823
TU1243997 lncRNA upstream 233157 59132186 ~ 59132476 (+) True G1093820
TU1243987 lncRNA upstream 246704 59118722 ~ 59118929 (+) True G1093810
TU1243894 lncRNA upstream 378429 58986447 ~ 58987204 (+) True G1093719
TU1244158 lncRNA downstream 113489 59503416 ~ 59503617 (+) True G1093974
TU1244163 lncRNA downstream 126114 59516041 ~ 59516951 (+) True G1093979
TU1244187 lncRNA downstream 187453 59577380 ~ 59577673 (+) True G1094003
TU1244193 lncRNA downstream 196539 59586466 ~ 59587553 (+) True G1094009
TU1244194 lncRNA downstream 201784 59591711 ~ 59593406 (+) True G1094010
XM_036937902.1 mRNA upstream 22527 59233354 ~ 59343106 (+) False sez6l2
XM_021624324.2 mRNA downstream 8808 59398735 ~ 59422218 (+) False hirip3
XM_021624321.2 mRNA downstream 8830 59398757 ~ 59422218 (+) False hirip3
XM_021624322.2 mRNA downstream 8835 59398762 ~ 59422218 (+) False hirip3
XM_021624317.1 mRNA downstream 9224 59399151 ~ 59422218 (+) False hirip3
XM_021624318.2 mRNA downstream 9224 59399151 ~ 59422218 (+) False hirip3
TU1241903 other upstream 1143443 58216155 ~ 58222190 (+) False LOC118937686
TU1241907 other upstream 1450801 57899471 ~ 57914832 (+) True LOC110537841
TU1241421 other upstream 2247706 57115825 ~ 57117927 (+) True LOC110537831
TU1241171 other upstream 2612686 56752418 ~ 56752947 (+) True G1091235
TU1241153 other upstream 2639630 56725607 ~ 56726003 (+) True G1091217
TU1244093 other downstream 151631 59541558 ~ 59542603 (+) True G1093909
TU1244425 other downstream 641076 60031003 ~ 60034020 (+) True G1094218
TU1245603 other downstream 995737 60385664 ~ 60385973 (+) True G1095244
TU1245572 other downstream 1306760 60696687 ~ 60714012 (+) True LOC110539079
TU1245566 other downstream 1426564 60816491 ~ 60818897 (+) True G1095209

Expression Profile