RNA id: XM_021624324.2


Basic Information

Item Value
RNA id XM_021624324.2
length 2724
RNA type mRNA
GC content 0.46
exon number 8
gene id hirip3
representative False

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 59398735 ~ 59422218 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCCATGCCTTCACAAGAGGCCCAAAACTGGGAGTTTTGTGAAAAGCCAAGCCACAGCCCAGATGCAGTTAATGCTTCCCATCGGTGACATGAGGATCTTTTGGACATCGTAGTTATTCCACATCGAATGTACTGCTCCCTTCAGACGGCGAAGCCCACCATAAGCACATTGACTCTTGGCATCTTAAGAGGGCGGTATTTGGCATGTGTTGGCCGGGACTCACTAAACCAGGAggacagacagttgatgaagagagtggtagaggaggaACTGCtgaggatgcagGACAGTGACAGCAGTGACAATGAAGCCATTATCAACGTTACCCCGATGCCTCTCCACAACAAAcggaagaggggtgaggaggaggagaaaggaggcaGGACCAAAGCAGATGGATCCAAGGCAAAGAGATCTCGGCTTCAGTCGGCCCAATCAGATTCTGGACTCGAGAGAGTGGGAAATGGAGAAAGGCAGATggcggaagaagaggaggggaaggacaTGGGAAGTGTTGAGCAAGTTTCCCAAATCGGCACCAAGAAAAACAAAGGGGGACACACAGGAGTACACAATAGTGGGAAGACTGAAACTAGCTCAGAAAGTGATGTTGAGATCAAAACGGTGAATCTGAGGAAGAGAGAACATGACTCTGAAGTCGAGGAAGAAGATTTTGAGGAGAACAAAAAGAGGAAACGAGATGAAACCCACAAACAGGAAAAGGACcaagtcaattcagaaagtgacAAAAAAAGAACGGGAGGAAAAGAAAATGTGGATGTGAAAGTGCAGAGCAAGTGTTTGAAAAGGAGGGAGAGTGGAAATGGGTTAAAGGAAAAACCATTGCAGAGAAGAGAAAGAGTGCAGGTTGTTGGGAGTGACTCGGAGCACATTGGAGAGGCTGAAGTAATGGCGCAGAAAGgggtaaaaatacaaaaaaatgacaaCGACTCCAGgtcagagagtgagggagaaaagaATGACGGTGCATCTTCAGAGGAAGCCAGCGGGGGAGAGGATGAAACCGAAGAAGTGATGGCTAAGACGAAGGATGAGCCAGCCCAAGACTCTGGCTCATCCCTCCCATCATTGGAGGACGAACAGGAAAGTGAGGTCAGGCCAGAACAGGTGAAAAAGAGGAAGTCTGTGGCGAAGCGGCCAATAAAGGGTGAGAGCAGTGAGAGTGGATCCAAAGGTGGAAAGGACAACACGGCGGTAGCCAGGCTGAAGCGTTACATCGCCCTCTGTGGTGTGAGACGGAATTACAAGAAGCTCCTGGATGGCTGCTGCTCCATCAAGTCAAAGGTGGCTGTGCTGAAGAGGGAGCTTGAAGAACTGGGTGTCAAAGgcCAGCCTTCTATAGAGAAGTGTAAGAAAGCCAGACTTAAGAGAGAGGAGGCTCAGGAGTTGGCAGACCTAGATGTCTGCAACATCATAACTACACAAGgtcGTCCAAAGCGGAGAGGGGTGTCCATATGGCAGCAACAgtcctcccctccatcctctgCTTATAAGCGTGTAGTCAACTCAAGCTCAGACAGTGATGAGGACAGTCACGCAGGCAGGGGGCGCAAGAGAGCCACAGACTGGAGTAATCTGCAGGGGATCATCAGTGATGATGCAGACAGCAACTGACAGGCTTTGCTCTTCTGGTCAGGAGGATCAAGTTGCCTCCAGACTAGAAGTCTTCACAGGTCCAAAAAGTTGGACCGGTACCGAAATGGACCTTGGGCTTTCCCACCCGGACCCGATATGCATAAAACATTCTAGACCCGTTCCTGGTCGGCTCCACACCCGATCCGAATGAGAAAAGCAACAGaaaagtattatttttttaagCTACTTTATTCTGGAAACGAACCCGACCGAGTATTTGGGTACAGATGGGTCCGTGAAGACCTTCACTTTTGCATTTTCCTCTACACTATGGAAGCTTAGTTGCTGGTTGTTTTACTGCCCATTTTAGCTTAATGTTGTCTGTATGGTTCTCAGATACACATGattaaggcctagattcaatcagaccAGCAATGGCAAACACTTGCATAGCAGATGTTTTGGTGGTGTCAGAGATGGAACTGTGTTTGTGCTTTCAAATCTGTGAGCAGCTGCTGTTGCAGTCATTGTCACAAAGCCAGTGGTATTAAAGTTCACAAtgaggctatatagaaataattacactcaaattgaaaatcattaacgaaataatgaggatttctatcatcctaatcgaggtgtagattacatctcacattccagtgttcgaacttgtaaacaaggctgaaTGGGATTTCTGTTATGAGCgactccgtgcagccaatggcaatgtccacatTAGGTGTAAATGCTTggagccacttgtggatttgacaacTTTAAAACAGTTCGACCTCTGACACCACTTGCTTtctaaagcggatctgattgaatagagccctaaatcAGTTTCTTCCCTCATTAAAACACTTAGTTGTAGGCTAAACAAACCTTTGCAATATAAGCTTTTGTCTTAATTACTTCAGTGTTGCCATGTACAAAGAAAAAAGGTATATTCTTGTATATAGGTACGCAAATATGACTTTTCCTTCTATTGCCGTACAGTTTGAGACAGTTTGAGACACGTTAGGTTAGCTGTTGAGTCAAGTGTGTGATTTAAATTACTATTAGTGCTGTGTTCTGTTCCATTTAAGTCATGATTCAATAAAGCTTTAGATTTGTATAAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1244054 lncRNA upstream 185748 59211790 ~ 59212987 (+) True G1093874
TU1244000 lncRNA upstream 255224 59143278 ~ 59143511 (+) True G1093823
TU1243997 lncRNA upstream 266259 59132186 ~ 59132476 (+) True G1093820
TU1243987 lncRNA upstream 279806 59118722 ~ 59118929 (+) True G1093810
TU1243894 lncRNA upstream 411531 58986447 ~ 58987204 (+) True G1093719
TU1244158 lncRNA downstream 81198 59503416 ~ 59503617 (+) True G1093974
TU1244163 lncRNA downstream 93823 59516041 ~ 59516951 (+) True G1093979
TU1244187 lncRNA downstream 155162 59577380 ~ 59577673 (+) True G1094003
TU1244193 lncRNA downstream 164248 59586466 ~ 59587553 (+) True G1094009
TU1244194 lncRNA downstream 169493 59591711 ~ 59593406 (+) True G1094010
XM_021624316.2 mRNA upstream 8808 59350779 ~ 59389927 (+) False kctd13
XM_036937905.1 mRNA upstream 8808 59365633 ~ 59389927 (+) True kctd13
XM_036937902.1 mRNA upstream 55629 59233354 ~ 59343106 (+) False sez6l2
XM_021624325.2 mRNA downstream 618 59422836 ~ 59436071 (+) False antkmt
XM_036937909.1 mRNA downstream 618 59422836 ~ 59436071 (+) True antkmt
XM_021624327.2 mRNA downstream 18013 59440231 ~ 59502350 (+) True xpo6
XM_021622421.2 mRNA downstream 86350 59508568 ~ 59539373 (+) False nme4
XM_036936691.1 mRNA downstream 86350 59508568 ~ 59539373 (+) False nme4
TU1241903 other upstream 1176545 58216155 ~ 58222190 (+) False LOC118937686
TU1241907 other upstream 1483903 57899471 ~ 57914832 (+) True LOC110537841
TU1241421 other upstream 2280808 57115825 ~ 57117927 (+) True LOC110537831
TU1241171 other upstream 2645788 56752418 ~ 56752947 (+) True G1091235
TU1241153 other upstream 2672732 56725607 ~ 56726003 (+) True G1091217
TU1244093 other downstream 119340 59541558 ~ 59542603 (+) True G1093909
TU1244425 other downstream 608785 60031003 ~ 60034020 (+) True G1094218
TU1245603 other downstream 963446 60385664 ~ 60385973 (+) True G1095244
TU1245572 other downstream 1274469 60696687 ~ 60714012 (+) True LOC110539079
TU1245566 other downstream 1394273 60816491 ~ 60818897 (+) True G1095209

Expression Profile