RNA id: TCONS_00040399


Basic Information

Item Value
RNA id TCONS_00040399
length 3881
RNA type mRNA
GC content 0.34
exon number 5
gene id XLOC_020350
representative True

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 18530395 ~ 18537415 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGAGCATCATTTGGCAAACCACTAGTCTGCTGCTACTGCTGCGTTGCTGTGCTCCAGGTTTCTGCATGCGAGATGGGATTGTTGGTGGGAAAGTGTCCATTCCACACAGTCGACCCTACATGGTCTACATTAAGGACTCAAATTCAAAATTAGCATGTGGCGGTTTTTTGATAAGAGAGGATTTTGTGCTCACAGCAGCCCACTGTAAACGAAGTCATCTAAAGGTCTATTTGGGGGTCAATGACACCCACATTTTACCTCACGGCATCGAGGTAGAAGCCACACCACATCCCAAATTCAATAATGCACCAGGCGATGACATCATGCTTCTAAAGCTTAAGACGCCGGCAACCTTGAACAAAACTGTGAATATTATCACCTGGCCAGAATGTGAGAATAAGGAAATCTCGAAAGACTGCATGGTCTTGGGTTGGGGCTGGCAGGATTATGTTGACGGGTGTCCATCAAGTGTCCTCAAAGAAGCGAATGTGACTCTGATAGACTTTAAAAAGTGTGGCACTAATTACACCCTTTGCACTAACGGATCAATTGGACCAGCAAAGGGAGACTCTGGAGGTCCACTTGTTTGTGGAGATGCTGCACAGGGAATTGTGTCTTTTTACACAGAGTCATCTGGAGTATACCTCACAAGATACACTCGTATTTCTCACTACCATCAATGGATTGATCACATCATGAATAAAACTTATCAGCAGCAACTGAAGACATGGAGGGGGAAGTTGTATGAACTCATTTAGTTGTTTGGTCCAGAGTTAATCATTTATGTTTGGTTTTAGTATTGCGGCATTAAACGTGATGTATATGcaagttaaaaatatatgtttatgtgAAACCATTCAACTGATTCAAAAAGCAATGTTTTttcctatttctaataactactgAGCATTTGTGCAGCTGCAGGGCACCACTGCCACCTTGTGCTGAAAGTGTATTTTATAATTGCTGAAAAAGGATGTTTAGGAAAAATGTGTAATGCAGATAACagaataaaatactataaagaaaAAACCTTACTGAATTGATTTGTCGTTTACACATGATTGTAAAGTGAATGCTCTTCTACGCCattcagcaataataataataatcttcagTCTGAAAATATCTAATTTATACTTCACCTACAGCGATGTGCtttaacacactgtaaaaccccctAAGTTAACTCAAACTGGTTGAAGAAATCGGTTGCAGCAAAccattccagtttttttttttaaatggtttgagtACTGTAAGCTTATATATTGTGTCACATACACATATATTGTGTGTTGAAATCATCAAACTTTATTAGTAACTTAAACAGATTAAGTTCAGTTTTCAAATCACTATTAGTTCAATTACCTTAAACTGGTCAATTCAGTTAAAGTCCAAAATTTATGCGTTACCATAACTCTTCTTcattgagttattttttttttatttaaagttaaactAACTTATTTCATTTAGTGATTTTCACTGTTAGGCTTTGCACTGTATCTGTACAAAAGACTAATACAAATTTGAAGTGTTGTTTTGACGTGTGTTTGAATTACAACTGACCaaaaagattattaaaattaTGTACAATACGCTTTTATTAGATAAGTACAGTTTGGGAAAGGTTTCACTATATTGTTTGAGAAAACTGTTTGcggcaaaccatttaagttttgaaacaaTATGGTTTGAGTACTGAAAACTATATGGCTATATATAGAGCCTTAaacactgtaatttttttttatcgttaaattacagaaatccataattttttttgtaatttaccatctgttattttacggtacatgtctgtaatttaacggccattatttaaatttttttccagcACCCCCCAGctgccaggaaaaaaaaaaacgtaaaattacaaaaaaaatttacagtGTACACATATTGTTTGTGTTGATAATTTGTGTTATCAAACTTTTAGGGAATTcaaaacttaaacattttaagatgAGTTATCAAATCACTATAAGCTCAACAAATTAAGTCCAAAGAACTATAAAACAACTGGAAAGGTTTGGTATTGCGACTAGTTTTAGAGATAAGTTAACATAAAAcatataattaattcattcataactcATTCATTTTGAGTTCTGCTTAATATAATCCATTCATGAGTTACCATAAGTCTTTTTCACAGAGTCAAAGTAACCTTTTAAAGTTAAACTACCTTATTTCCTTTAGTTAGGTTTTACTGTGTATTTACTCTTACAGCTCATTTCAAATGACAATGACCCAGTTTcgtcttaaaggaatagttcagccaaaattTCATTATTTCTCACCCTTTTAcctgttcaaaacctgtttgagagttctgttgaacacaaaagaagatgttccCAAAAATGCTGGAAAACtgataaccattgacttacacatTTGCTATATCTTCTGTGCTTCgctaaaatagttgggttaaaaataccccaacatataactcAACCATTTTAggaccttcccaactatgggttattttgattaaatgttttgtttttttttattattattcattctggtattactattgctaaTATTACTAGTACTACCATTCATTTTATATCAtgtctgtgtaaataaataaccaatttCAAAAATATCGAAAATGCTTTACTTTCATTACATTGTACGTCCCAGACACTTaaggatttttattcatttaatatagaTCCGCTATGAAGCGCACGTTTGTATTATCAATAATTAAGAATGCTGGTGAaccggaaaaaaaacaaaaacgactCGTAGAGgtaaataaaaactttacaaaGCAAAAACAACGTTACGtatgcatattaatacagctgttctgtgtcagctAAAGCAGGTGACTTCTGAAATTCaaaaattttaacccaactggttaagTTATTAATACATacaccaaataaaggttaaaaataacctgCCAAAGCACCATATATTTTTAACACAACGTTTTTAGAGTGTGGATGTCAGtggttttcagatttcttcaaaatttcttcttgtgtgttcaacaggaTAAAGTTTTTGAATCCCTTGAGGCAGATAAAATagtatatttaaaattttgagtgaactaccatTTAGGTCTCCTCCATCTCATCTCCATTAAATGAAACAGATTTTTTATTCTGGATTAAGTGATTTAGTTTATGAGTAATTTTATTGGAAATATACGCACAaacttgaaaaaaatgtaaatcaattcATAAAACCATTTAGGTGAGACAgcaaatgtacagttttttattattatttaacaatgtCAGGAATGTATTGTCACTGTCTTGCCTTCTTAATTCCTGTCTATTTTCTGGTCTTGTCCGTTACAAAAATGAGCTTCAATAGGGCATACAAAAGGTTAAAGCTGATCAAAAGACTTAGTCTAAAAAACGTACTCACAAACTTAAGCTGTGGCACTGCGGTTAGAGTAAGCACTATCTGGTGATCTTCTGAGAACTGCAAAATAAACATGACGGGCCTTCTGTGTGGGTAGAGGATGTGAGCTGTAATGCAAGGCAAACATTTGTGAAGTCAGGAGCTGAACACAGATCAAATTTAACAACTGTGATCCTTCAAATGCAGAATATCTGAATGATTTAGTGCACTGCACAATCTCAAAGACATGCGCCGGCTAAATCCTGATCTCTCAAATGCAATTTCATAAGTGTGGCCAGATTTCAAAGTGTCACATGCAACTTTCTATTTTGAAAGCCCACTGGTCAACCGGTCTGCTATTTTGGTGAATTATGTATTTTACGGTTTGTCATTTTATTGAACTGATGGTAGAGACACCCTGGCATCAAATCaataatttttgcaaatttaaagaTTAGATGAGTGAAATTAGTttggt

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0005737 cytoplasm cellular_component
GO:0004252 serine-type endopeptidase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008236 serine-type peptidase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050208-355 Predicted to enable serine-type endopeptidase activity. Predicted to act upstream of or within proteolysis. Located in cytoplasm. Is expressed in female organism.

Ensembl:

ensembl_id ENSDART00000183958

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00042123 lncRNA upstream 226115 18253157 ~ 18304288 (+) False XLOC_020344
TCONS_00042127 lncRNA downstream 22928 18560343 ~ 18569388 (+) False XLOC_020351
TCONS_00042128 lncRNA downstream 22928 18560343 ~ 18596258 (+) False XLOC_020351
TCONS_00042129 lncRNA downstream 28156 18565571 ~ 18569388 (+) True XLOC_020351
TCONS_00041895 lncRNA downstream 1301860 19839275 ~ 19839592 (+) True XLOC_020382
TCONS_00042130 lncRNA downstream 1474381 20011796 ~ 20050276 (+) True XLOC_020383
TCONS_00040397 mRNA upstream 31758 18497759 ~ 18498645 (+) True XLOC_020349
TCONS_00040395 mRNA upstream 44933 18469004 ~ 18485470 (+) False XLOC_020348
TCONS_00040396 mRNA upstream 44941 18477934 ~ 18485462 (+) True XLOC_020348
TCONS_00040394 mRNA upstream 65749 18389271 ~ 18464654 (+) True XLOC_020347
TCONS_00040393 mRNA upstream 142484 18349794 ~ 18387919 (+) True XLOC_020346
TCONS_00040400 mRNA downstream 249382 18786797 ~ 18813682 (+) False XLOC_020352
TCONS_00040401 mRNA downstream 270112 18807527 ~ 18824801 (+) False XLOC_020352
TCONS_00040402 mRNA downstream 279247 18816662 ~ 18824801 (+) True XLOC_020352
TCONS_00040403 mRNA downstream 347556 18884971 ~ 18897231 (+) False XLOC_020353
TCONS_00040404 mRNA downstream 348794 18886209 ~ 18892696 (+) True XLOC_020353
TCONS_00040385 other upstream 249963 18247292 ~ 18280440 (+) False XLOC_020344
TCONS_00040386 other upstream 249963 18253158 ~ 18280440 (+) False XLOC_020344
TCONS_00040387 other upstream 275548 18254769 ~ 18254855 (+) False XLOC_020344
TCONS_00040381 other upstream 355025 18166599 ~ 18175378 (+) False XLOC_020342
TCONS_00040377 other upstream 705830 17824459 ~ 17824573 (+) True XLOC_020339
TCONS_00040420 other downstream 699616 19237031 ~ 19238226 (+) True XLOC_020360
TCONS_00040469 other downstream 1234283 19771698 ~ 19771812 (+) True XLOC_020380
TCONS_00040470 other downstream 1255704 19793119 ~ 19793233 (+) True XLOC_020381
TCONS_00040472 other downstream 1602110 20139525 ~ 20139592 (+) True XLOC_020385
TCONS_00040475 other downstream 1614510 20151925 ~ 20151981 (+) True XLOC_020387

Expression Profile

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