RNA id: TCONS_00042127


Basic Information

Item Value
RNA id TCONS_00042127
length 1447
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id XLOC_020351
representative False

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 18560343 ~ 18596258 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

cTAAATTATTGCAAATGGGCTTGAGCATAACGTCATAAATAAGTGCCCTTTTATAAACATGACGTTATCGTCCGTTGGTGTGCATATTTGGCCGTTAATATCGTACTTGTAAACGGTTTTATAATGCGCGGAACACGATTCGGACGACATGTCATCCTCAATATTAACACTCCACAAACAATCAAAGTCTAAAGCCACAGGATATGAGCGTGGGGTGTTGTCTTGTTGTGGTGCGCTGTCGCTGAGGTGAGCTGGGAACGCAGCAGCTGGAGTGAGTGAGTCTCTACCGGTACACAAACAACACTCGTTGCCGTGGGCGTGTACCGGCACTCTGTGATTGACGCACTTCCACTCCACCCTCCTCCCGCCGCCTCCAAAGAGGTTCCGCGGATCCCACAGGCCTCCATTCATACAAGCAGGGCCTTCACGTCACCTCTGATACCTCGCACGGTAGACCTCATTCCAGGAAAGACCAAGAGAGCGAACAGCTGCCCTCCTCCTTAAATCCCTAAGCCAAGTGCAGTCATACCTTCATATGCCCCCTTTGGACCAACACATTCAACCTTCCACCCACTCATGAAGGAATGGCGAAAGAGGGGTGAACAGGGATATCATGTAAAAATGCTGGAAGAGAATGATGTTATATCACGAAAATAAAAACGGCTGCAGAgaggaaggaaaaagaaaaattgGGGGGAAAGAGAGTTTGAAGTCATGGAACAAATCCTGGATCCCCGTTCTGTGCCTCATGCAGAACTCAAGCTTGTTTTGTCATGCGCCGAAACGGACCCTCAGGTCATGCTGCATGCcttcacagcacacacacacacacacacacacaggcttttGTCTGCAGATGGAAAACAGCATCGGTGCACTCACTTCATGGAAGGAGAGTTCATGGCGAACAATATATGTTCTCGAAGGCCGCGAGATATGTGCATTTCAGAACATTCCTTTGATGTCAAGTGAGCCATGAATCATTTCAAAACCGAGTATTTGTTACGCCTCAGCTGAATGTTTCACCCTGGTGAACAGAAAATGGCAAAAGTTGAGGTTTAGTTCAAGGGGTTGTCACTTTAGTTTGGGAAAGTAATCTGTAATCATAATCAGATTAGCTTTTCTATGGTTTGTAAGAAAAAATTGATGCCAGAAAACCAAAACTTTTATGGATAATTGACTACAAATGGAAAGCTTTGTCTGGGTTTTGATCATTCACTTATAGCACAAGGGTGCAGCCTGAAAAtgcaaatgtttgaaaatgggttttaaagGGCTATTTTTTCAAATCTAAAtctattcaaaaatgttttgaatgtgcCATCTCAATGTAAACTACACAAATGTGGACTTTGTGAAAATTTAATTTAAGGAAAATGCACATTACTTGGGTGCTTAACAACTAAAAACAACTatggataaaataaatttttatctGCTGTAAAAA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00042108 lncRNA upstream 256055 18243758 ~ 18304288 (+) False XLOC_020344
TCONS_00042109 lncRNA upstream 256055 18243836 ~ 18304288 (+) False XLOC_020344
TCONS_00042110 lncRNA upstream 256055 18243967 ~ 18304288 (+) False XLOC_020344
TCONS_00042111 lncRNA upstream 256055 18243973 ~ 18304288 (+) False XLOC_020344
TCONS_00042112 lncRNA upstream 256055 18243990 ~ 18304288 (+) False XLOC_020344
TCONS_00041895 lncRNA downstream 1269887 19839275 ~ 19839592 (+) True XLOC_020382
TCONS_00042130 lncRNA downstream 1442408 20011796 ~ 20050276 (+) True XLOC_020383
TCONS_00042131 lncRNA downstream 1677084 20246472 ~ 20247476 (+) True XLOC_020390
TCONS_00042132 lncRNA downstream 1678521 20247909 ~ 20259347 (+) True XLOC_020391
TCONS_00042133 lncRNA downstream 1691843 20261231 ~ 20265527 (+) True XLOC_020392
TCONS_00040399 mRNA upstream 22928 18530403 ~ 18537415 (+) True XLOC_020350
TCONS_00040398 mRNA upstream 26081 18530395 ~ 18534262 (+) False XLOC_020350
TCONS_00040397 mRNA upstream 61698 18497759 ~ 18498645 (+) True XLOC_020349
TCONS_00040395 mRNA upstream 74873 18469004 ~ 18485470 (+) False XLOC_020348
TCONS_00040396 mRNA upstream 74881 18477934 ~ 18485462 (+) True XLOC_020348
TCONS_00040400 mRNA downstream 217409 18786797 ~ 18813682 (+) False XLOC_020352
TCONS_00040401 mRNA downstream 238139 18807527 ~ 18824801 (+) False XLOC_020352
TCONS_00040402 mRNA downstream 247274 18816662 ~ 18824801 (+) True XLOC_020352
TCONS_00040403 mRNA downstream 315583 18884971 ~ 18897231 (+) False XLOC_020353
TCONS_00040404 mRNA downstream 316821 18886209 ~ 18892696 (+) True XLOC_020353
TCONS_00040385 other upstream 279903 18247292 ~ 18280440 (+) False XLOC_020344
TCONS_00040386 other upstream 279903 18253158 ~ 18280440 (+) False XLOC_020344
TCONS_00040387 other upstream 305488 18254769 ~ 18254855 (+) False XLOC_020344
TCONS_00040381 other upstream 384965 18166599 ~ 18175378 (+) False XLOC_020342
TCONS_00040377 other upstream 735770 17824459 ~ 17824573 (+) True XLOC_020339
TCONS_00040420 other downstream 667643 19237031 ~ 19238226 (+) True XLOC_020360
TCONS_00040469 other downstream 1202310 19771698 ~ 19771812 (+) True XLOC_020380
TCONS_00040470 other downstream 1223731 19793119 ~ 19793233 (+) True XLOC_020381
TCONS_00040472 other downstream 1570137 20139525 ~ 20139592 (+) True XLOC_020385
TCONS_00040475 other downstream 1582537 20151925 ~ 20151981 (+) True XLOC_020387

Expression Profile

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