RNA id: TU1244238


Basic Information

Item Value
RNA id TU1244238
length 1634
lncRNA type sense_over
GC content 0.38
exon number 1
gene id LOC110537883
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 59710093 ~ 59726547 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCACTCAATACTGCTGTCGTATTAGATATTGGTTGGGGGAGTGATGACTATTATACACATGTTGAACTGTGTTGAACTGTGAGTTGTCATGCACCGTTCTTATACCGACCTCCCTGTTATGCTCTCCTTCTGCTTGATGGTAGACTCGTGTCTGTTAGTCACACAGACATTTGATTTAGTTGTCACCCCTGTGCATCCAATGGTTGGGCTGTAGACAGTTTACTGAATAAAGAAGGCAAAGGGGGTAgaaaaggggtgtccacatattataataaatatatgtGTATTTTTCAGTGTACAATGTTTATTTTATGCATCAAAGCACTTGTATATACCATGcatttggaaactattcagaccccttgactttttccacattttattacattagccttattctaaaatggattcaattgttattttttctcatcaatctatacacaataccccataatgacaaagcaaaaacaggtttatagaaatgttaacttaaaaaaaaaaaaattatataaattTGCGATCACATTCAgaggttttcataaaggatcaCACTATACTTTGCTTAGTTtctttccctcaattctgactactctcccagtccctgccgctgaaaaacatccctccagaatgctgccaccaccatacataaaggcctgattggtggagtgctgcagagatggttgtccttctggaaggttatccaatctccacagaggaactcttgagctctaTCAGGGTTCttgggtcttggtggttccaaacttcttccatttaagaatggaggccgctgtgttcttggggaccttcaatgctgtagaaatgttttggtacccttccccagatctgtgcctcgacacaatcctgtcttggaagtcgatggacaattccttcgacctcatggtttttgctctgatatgcactgtcaactgtgggacctttatatatacaggtgtgggcctttccaaatcatgtccaatccacaggtggactccaatcaagttgtagaaacatctcaaagatgagatgaatggaaacgggatgcacctgagctcaatttcgagtctcctatcatagggtctgaatacttatgtataaggtatttgttttttattttgaatacatttgctaaaatttctaaaacaaCTCTGTAATGTTACAAACtggaaaaagtgaaggagtctaaatactttcccaatgcactgtataaaCGGGATATATAAATGGATCTTCTATGCTCAtgttcatactgtatgtgtaggcctTTATTCTTATCTTGATCTCTGTCAATCTTTCTCTCCAATAATGTATATCTAAAGCATGGCCTTTGACTGAAACTAAGATGAATAGGTGAAATATGCACAGAACTATCGCTGTATTGGCaaggttttttgtttttttttggtcAAATTATCTGTGCTTTTTGCCTTTTTTCCCCCTGGTTCCAGCAAATGTTTAATCTTTAAAAATCATTTACATTCAGTATTCTCTGTTAGGTTGCAATAACAATATAAATCTTGTGTTTGCACACCAATGTTCCTCCCAAGAACTAAGGATTAAGTAAGTAATGTTTGCTGGTCTAAAGAACCTACAATGGCACAATGCAAATACCTTGGCATATCaacatcaaataaaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1244279 lncRNA upstream 16645 59706406 ~ 59708269 (+) True LOC110537889
TU1244278 lncRNA upstream 38847 59685762 ~ 59686067 (+) True G1094084
TU1244194 lncRNA upstream 131508 59591711 ~ 59593406 (+) True G1094010
TU1244193 lncRNA upstream 137361 59586466 ~ 59587553 (+) True G1094009
TU1244187 lncRNA upstream 147241 59577380 ~ 59577673 (+) True G1094003
TU1244289 lncRNA downstream 8395 59734942 ~ 59735397 (+) True G1094095
TU1244295 lncRNA downstream 24857 59751404 ~ 59751776 (+) True G1094098
TU1244303 lncRNA downstream 26415 59752962 ~ 59753224 (+) True G1094106
TU1244236 lncRNA downstream 38270 59764817 ~ 59766890 (+) True G1094042
TU1244318 lncRNA downstream 64395 59790942 ~ 59791240 (+) True G1094119
XR_002475686.2 mRNA upstream 16589 59705945 ~ 59708325 (+) False LOC110537889
XM_021624346.2 mRNA upstream 22758 59688669 ~ 59702156 (+) True atp6v0ca
XM_021624340.2 mRNA upstream 51032 59672217 ~ 59673882 (+) True LOC110537886
XR_002475687.2 mRNA upstream 113391 59599371 ~ 59611523 (+) True LOC110537890
XR_005035051.1 mRNA upstream 126636 59596614 ~ 59598278 (+) True LOC118937690
XM_021624339.2 mRNA downstream 14619 59741166 ~ 59751234 (+) True mrps34
XM_021624344.2 mRNA downstream 28717 59755264 ~ 59760527 (+) False nme3
XM_021624342.2 mRNA downstream 28775 59755322 ~ 59760527 (+) False nme3
XM_021624341.2 mRNA downstream 29232 59755779 ~ 59760527 (+) False nme3
XM_021624343.1 mRNA downstream 29280 59755827 ~ 59760527 (+) True nme3
TU1244093 other upstream 182311 59541558 ~ 59542603 (+) True G1093909
TU1241903 other upstream 1502724 58216155 ~ 58222190 (+) False LOC118937686
TU1241907 other upstream 1810082 57899471 ~ 57914832 (+) True LOC110537841
TU1241421 other upstream 2606987 57115825 ~ 57117927 (+) True LOC110537831
TU1241171 other upstream 2971967 56752418 ~ 56752947 (+) True G1091235
TU1244425 other downstream 304456 60031003 ~ 60034020 (+) True G1094218
TU1245603 other downstream 659117 60385664 ~ 60385973 (+) True G1095244
TU1245572 other downstream 970140 60696687 ~ 60714012 (+) True LOC110539079
TU1245566 other downstream 1089944 60816491 ~ 60818897 (+) True G1095209
TU1245870 other downstream 1228153 60954700 ~ 60965595 (+) True mmp25a

Expression Profile