RNA id: XM_021624370.2


Basic Information

Item Value
RNA id XM_021624370.2
length 2402
RNA type mRNA
GC content 0.49
exon number 5
gene id si:ch211-195b15.8
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 60478445 ~ 60482021 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GACATCACATACAATTGTACTATTCTTAGCTTGTAGAAAACGCATTACCTCATCCTTTTCCTCTCGCGCAGGTATAGACATACAACAACAAATAATGTTACAGTCGCAGACAGGACGAGGACGGGATTAgaagtcgagagagagagagctgtactCTACTGATTATTAGTTAAGCATAACATATCCTTTTGGAATCTTCATCCATTTGCTTTGAGACCATTCGTTTGATTATATTATTTGGTGTGCAAGTTGATTTGTGCGATATTTCCAGTATCTTCGTTTGGATTGAAAATCGTCACTACACAAAGAACAGAGATGGTGttctacagggagagagagaacgggacacGCGAACGTCCACCGCTGTCTCTCATCCTACCGCATCTTTACCTAGGTGCAGAGACGGACGTCACGCAGGATTGCCTCGGCGCTCGCGGGATCTCCTACGTGCTAAGCGTGAGCCGCTGCAGCCCGCAGCCTACTTTCCTTCCCCGTTCCCAGTACCTTCGCATCCCCATCGACGACTCTCTCCGAGATGACCTGCTGCCCCATATCCCGGAGGCACTGCGTTTTATCGaTGGGGCTATGTCATCAGGTGGATCTGTGATAGTTCATTGTGCTGCAGGAATCTCTCGCTCCCCTGCCCTGGCTGTGGCCTACATTATGTACAACCTGGGGATGGACCTTGACCATGCCTAcagGTTTGTGAAAGAGCGCAGGCCTTCAATCTCCCCTAACTTCAATTTTCTGGGTCAGCTACAACACTTCCAGGGAACCCTCGCTCAGAAGGCCTCTAATGGCAACCCCACTATCCAGCCAATCAGATCACTGGACACATGTCTGCAGTCAAGCAATGAAAACATTAGCTGCGgttcctctgtccccctgtcagccaatcagatcaTGAATATTCAGGACAATGGCTATGTTGCTAAGGACTTTTTAGGGGTTGCTAAAGTGCATAATATGTACAATGAGATTTCCACTTGTAACACAGAGAACATAGAGCAAAGGTGCTCATATTCATGTGAAACTCAGAGTCTATCAGAGAAGCTACAGCAAGACCAGAGGAGTGTGCCTTCACAACTGACGCTGTCTCTCTCCAGCAAACTCAGAACGCTCACTCTCAACCTGAACCATAACCACAACCAGAACCAGAGGGAGGCCCAGAACTCGTGTGGAGCAATGACTCCAAGCCCCAACGAACCAGCGACACCAACACCAAAGCCCAACACACTACAAATCCCAACAGGCATTGCGTCTCTCTCTGAGAAGCGCAAGAGcctcaccctctccctgtctcccgttGGTGCAATTCTCCCAACCCCCCACCAGAATGAGCCACAAAGCAACAACAGGCAAAGCATTAGCCACAAGCCAACACGCTCCAGCGCTTCCAACACCATCCACAAGAGGGAGTCAGAAGGCACCAGTGGTTCAAAAAGGCACGGTAGAAAGCCTTCGGGGGTGGCCCTTTCCTCCTCACAGACAGAcgtacaacagagagagaggagcacatCCTGTGGCAAAGCAGCAGGTCGGCCCAATCACTGCTCCTCCCGAACCCAGGTGAAAGTAGAGAGAGCTGGAAGAGGCCAGGGTAAAAGAGAGCCCAGCCGCAGTCAGAGCGTGGAGAAGGGGAGGCCTAACTCAACTCCAAAGACAGGGAAGGACCACAGCAAGggaagagcagagagggagacgcTAACTGGGAGCCTGAGCAGCAGTTCTGTTTTGAATCAGCTCAGTATCATAGTTGACCAGCAGGTGTCACCAGCAGCTAAACTGTCTGCATCTGCAGTGGAGGCTGAGGAAGGAGTGGATGCTGAACAGGGCCTCCTGTCTCCTCTCAACCTGACTGTCAACAAGCTGCTGGGCTGGGGGGAGAAGATGCTGTTGGGGGTTCTGCTTGGCCCCCGGATCAAAGTGGGACAGGCTGTTCTGCCCTATAGGTGCTGATGCGGTAAGAGACCActggtgaggacagagagagggctgGTAAATGCCAGgagattgatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtgtgtgtgcgcatgcatgtgAGGAACTGAAGAACATAACTGCATGTAAAATATTTGTCTGCCCATACCATGTTCACAGAGCTCTGAGTGAATGCTTTGTCCTATAAATACCAATTTATTGTTGACTTCCTTCAAAAGCactatatatattacatataggaGCAGTTTATGCCTCCAACACAATGCTCATGGATTTCGGCTTGATTATgttgatttttatttattgattGATGTGAATAAAGTGATCAGtttattgttgttatttataAAATGAATATTTTGAGGATGGTATTTTGGCACTGTTGTTTGTAATGGGATCATAGTGTTCATTAAAGTACATATTTTACTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1245604 lncRNA upstream 90739 60387455 ~ 60387706 (+) True G1095245
TU1245602 lncRNA upstream 95010 60383146 ~ 60383435 (+) True G1095243
TU1245598 lncRNA upstream 101257 60376967 ~ 60377188 (+) True G1095239
TU1245597 lncRNA upstream 101655 60376431 ~ 60376790 (+) True G1095238
TU1245596 lncRNA upstream 102592 60375633 ~ 60375853 (+) True G1095237
TU1245660 lncRNA downstream 19713 60501734 ~ 60509165 (+) True prrg2
TU1245666 lncRNA downstream 64766 60546787 ~ 60550460 (+) True G1095306
TU1245682 lncRNA downstream 75028 60557049 ~ 60557273 (+) True G1095322
TU1245686 lncRNA downstream 81428 60563449 ~ 60563648 (+) True G1095326
TU1245689 lncRNA downstream 83996 60566017 ~ 60566245 (+) True G1095329
XM_036937935.1 mRNA upstream 14750 60415043 ~ 60463695 (+) False ap2a1
XM_036937938.1 mRNA upstream 14750 60415043 ~ 60463695 (+) False ap2a1
XM_036937940.1 mRNA upstream 14750 60415043 ~ 60463695 (+) False ap2a1
XM_036937936.1 mRNA upstream 14750 60415044 ~ 60463695 (+) False ap2a1
XM_036937939.1 mRNA upstream 14750 60415044 ~ 60463695 (+) False ap2a1
XM_021624371.2 mRNA downstream 869 60482890 ~ 60500493 (+) True LOC110537905
XM_021624373.2 mRNA downstream 19681 60501702 ~ 60511300 (+) False prrg2
XM_036937942.1 mRNA downstream 31226 60513247 ~ 60544029 (+) True prr12b
XM_021624377.2 mRNA downstream 94940 60576961 ~ 60596221 (+) False scaf1
XM_021624375.2 mRNA downstream 94941 60576962 ~ 60596221 (+) False scaf1
TU1245603 other upstream 92472 60385664 ~ 60385973 (+) True G1095244
TU1244425 other upstream 444425 60031003 ~ 60034020 (+) True G1094218
TU1244093 other upstream 935842 59541558 ~ 59542603 (+) True G1093909
TU1241903 other upstream 2256255 58216155 ~ 58222190 (+) False LOC118937686
TU1241907 other upstream 2563613 57899471 ~ 57914832 (+) True LOC110537841
TU1245572 other downstream 214666 60696687 ~ 60714012 (+) True LOC110539079
TU1245566 other downstream 334470 60816491 ~ 60818897 (+) True G1095209
TU1245870 other downstream 472679 60954700 ~ 60965595 (+) True mmp25a
TU1245937 other downstream 555718 61037739 ~ 61352345 (+) True G1095540
TU1246640 other downstream 1964483 62446504 ~ 62447474 (+) True LOC118937701

Expression Profile