Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00040417 |
| length | 853 |
| RNA type | mRNA |
| GC content | 0.41 |
| exon number | 5 |
| gene id | XLOC_020359 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007133.7 |
| NCBI id | CM002906.2 |
| chromosome length | 39133080 |
| location | 19218733 ~ 19233919 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006508 | proteolysis | biological_process |
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0004252 | serine-type endopeptidase activity | molecular_function |
| GO:0016787 | hydrolase activity | molecular_function |
| GO:0008233 | peptidase activity | molecular_function |
| GO:0008236 | serine-type peptidase activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-050208-378 | Predicted to enable serine-type endopeptidase activity. Predicted to act upstream of or within proteolysis. Predicted to be located in membrane. Predicted to be integral component of membrane. |
| ensembl_id | ENSDART00000133595 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00042128 | lncRNA | upstream | 622550 | 18560343 ~ 18596258 (+) | False | XLOC_020351 |
| TCONS_00042127 | lncRNA | upstream | 649420 | 18560343 ~ 18569388 (+) | False | XLOC_020351 |
| TCONS_00042129 | lncRNA | upstream | 649420 | 18565571 ~ 18569388 (+) | True | XLOC_020351 |
| TCONS_00042126 | lncRNA | upstream | 914520 | 18254860 ~ 18304288 (+) | False | XLOC_020344 |
| TCONS_00041895 | lncRNA | downstream | 618218 | 19839275 ~ 19839592 (+) | True | XLOC_020382 |
| TCONS_00042130 | lncRNA | downstream | 790739 | 20011796 ~ 20050276 (+) | True | XLOC_020383 |
| TCONS_00042131 | lncRNA | downstream | 1025415 | 20246472 ~ 20247476 (+) | True | XLOC_020390 |
| TCONS_00042132 | lncRNA | downstream | 1026852 | 20247909 ~ 20259347 (+) | True | XLOC_020391 |
| TCONS_00042133 | lncRNA | downstream | 1040174 | 20261231 ~ 20265527 (+) | True | XLOC_020392 |
| TCONS_00040415 | mRNA | upstream | 28661 | 19188862 ~ 19190147 (+) | False | XLOC_020358 |
| TCONS_00040413 | mRNA | upstream | 35302 | 19175651 ~ 19183506 (+) | True | XLOC_020357 |
| TCONS_00040412 | mRNA | upstream | 62476 | 19111444 ~ 19156332 (+) | True | XLOC_020356 |
| TCONS_00040411 | mRNA | upstream | 210840 | 18952781 ~ 19007968 (+) | True | XLOC_020355 |
| TCONS_00040410 | mRNA | upstream | 213357 | 18951096 ~ 19005451 (+) | False | XLOC_020355 |
| TCONS_00040419 | mRNA | downstream | 9377 | 19230434 ~ 19233919 (+) | True | XLOC_020359 |
| TCONS_00040421 | mRNA | downstream | 26198 | 19247255 ~ 19250734 (+) | True | XLOC_020361 |
| TCONS_00040422 | mRNA | downstream | 41104 | 19262161 ~ 19267305 (+) | False | XLOC_020358 |
| TCONS_00040423 | mRNA | downstream | 43124 | 19264181 ~ 19428807 (+) | False | XLOC_020362 |
| TCONS_00040424 | mRNA | downstream | 43131 | 19264188 ~ 19265457 (+) | False | XLOC_020362 |
| TCONS_00040385 | other | upstream | 938368 | 18247292 ~ 18280440 (+) | False | XLOC_020344 |
| TCONS_00040386 | other | upstream | 938368 | 18253158 ~ 18280440 (+) | False | XLOC_020344 |
| TCONS_00040387 | other | upstream | 963953 | 18254769 ~ 18254855 (+) | False | XLOC_020344 |
| TCONS_00040381 | other | upstream | 1043430 | 18166599 ~ 18175378 (+) | False | XLOC_020342 |
| TCONS_00040377 | other | upstream | 1394235 | 17824459 ~ 17824573 (+) | True | XLOC_020339 |
| TCONS_00040420 | other | downstream | 15974 | 19237031 ~ 19238226 (+) | True | XLOC_020360 |
| TCONS_00040469 | other | downstream | 550641 | 19771698 ~ 19771812 (+) | True | XLOC_020380 |
| TCONS_00040470 | other | downstream | 572062 | 19793119 ~ 19793233 (+) | True | XLOC_020381 |
| TCONS_00040472 | other | downstream | 918468 | 20139525 ~ 20139592 (+) | True | XLOC_020385 |
| TCONS_00040475 | other | downstream | 930868 | 20151925 ~ 20151981 (+) | True | XLOC_020387 |
