RNA id: TCONS_00040418


Basic Information

Item Value
RNA id TCONS_00040418
length 521
RNA type mRNA
GC content 0.38
exon number 2
gene id XLOC_020359
representative False

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 19218733 ~ 19233919 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGTTCATAATTAACAATTGTGTTTTGCATTACAGCTAAAGACAAAGGTCAGACTGAGCAACATTGTTGGAATGATATCATTACCAAAGGATGGAGAAGATGTTAAAGCAGATACTCTCTGTAGTGTTGCTGGTTGGGGAACACTGTGGAAAAATGGCCCAAAACCTGATCGTCTAATGGAGGCAGAGACAGTTATAGTGAATGATGCAGAGTGTGAACGCAGATGGGAATCTTTTTATAAGGCCTCAAAGATGATCTGTGTTTATGGTCATGGTGGATCCTGCTATGGGGATTCTGGAGGTCCTTTGGTTTGTGATAACACTGCTTTTGGTATCACTTCTTTTGTTGACCTTTATCTCTGTAATTCACGTTTGCGTCCTAATGTGTATACTAGGACTTCAGCACATCTCCCCTGGATCCACAACATAACTGGAAATTTTTAGTGGCttcatgtaaaaagattttttattgaatttttatataaaattttcaaTAAAAGTATGAAATGGCAAGCATCAATCA

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004252 serine-type endopeptidase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008236 serine-type peptidase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050208-378 Predicted to enable serine-type endopeptidase activity. Predicted to act upstream of or within proteolysis. Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDART00000163070

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00042128 lncRNA upstream 624201 18560343 ~ 18596258 (+) False XLOC_020351
TCONS_00042127 lncRNA upstream 651071 18560343 ~ 18569388 (+) False XLOC_020351
TCONS_00042129 lncRNA upstream 651071 18565571 ~ 18569388 (+) True XLOC_020351
TCONS_00042126 lncRNA upstream 916171 18254860 ~ 18304288 (+) False XLOC_020344
TCONS_00041895 lncRNA downstream 618213 19839275 ~ 19839592 (+) True XLOC_020382
TCONS_00042130 lncRNA downstream 790734 20011796 ~ 20050276 (+) True XLOC_020383
TCONS_00042131 lncRNA downstream 1025410 20246472 ~ 20247476 (+) True XLOC_020390
TCONS_00042132 lncRNA downstream 1026847 20247909 ~ 20259347 (+) True XLOC_020391
TCONS_00042133 lncRNA downstream 1040169 20261231 ~ 20265527 (+) True XLOC_020392
TCONS_00040415 mRNA upstream 30312 19188862 ~ 19190147 (+) False XLOC_020358
TCONS_00040413 mRNA upstream 36953 19175651 ~ 19183506 (+) True XLOC_020357
TCONS_00040412 mRNA upstream 64127 19111444 ~ 19156332 (+) True XLOC_020356
TCONS_00040411 mRNA upstream 212491 18952781 ~ 19007968 (+) True XLOC_020355
TCONS_00040410 mRNA upstream 215008 18951096 ~ 19005451 (+) False XLOC_020355
TCONS_00040419 mRNA downstream 9372 19230434 ~ 19233919 (+) True XLOC_020359
TCONS_00040421 mRNA downstream 26193 19247255 ~ 19250734 (+) True XLOC_020361
TCONS_00040422 mRNA downstream 41099 19262161 ~ 19267305 (+) False XLOC_020358
TCONS_00040423 mRNA downstream 43119 19264181 ~ 19428807 (+) False XLOC_020362
TCONS_00040424 mRNA downstream 43126 19264188 ~ 19265457 (+) False XLOC_020362
TCONS_00040385 other upstream 940019 18247292 ~ 18280440 (+) False XLOC_020344
TCONS_00040386 other upstream 940019 18253158 ~ 18280440 (+) False XLOC_020344
TCONS_00040387 other upstream 965604 18254769 ~ 18254855 (+) False XLOC_020344
TCONS_00040381 other upstream 1045081 18166599 ~ 18175378 (+) False XLOC_020342
TCONS_00040377 other upstream 1395886 17824459 ~ 17824573 (+) True XLOC_020339
TCONS_00040420 other downstream 15969 19237031 ~ 19238226 (+) True XLOC_020360
TCONS_00040469 other downstream 550636 19771698 ~ 19771812 (+) True XLOC_020380
TCONS_00040470 other downstream 572057 19793119 ~ 19793233 (+) True XLOC_020381
TCONS_00040472 other downstream 918463 20139525 ~ 20139592 (+) True XLOC_020385
TCONS_00040475 other downstream 930863 20151925 ~ 20151981 (+) True XLOC_020387

Expression Profile

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