RNA id: TCONS_00040440


Basic Information

Item Value
RNA id TCONS_00040440
length 864
RNA type mRNA
GC content 0.41
exon number 4
gene id XLOC_020367
representative False

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 19365220 ~ 19367446 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGACAATCATCATCATCTCTCTGCTCCTGCTGGTTTCTCTTGTGCCAGACCTGACCTTCACTGGTGAGACTGACTATACAAATGATGATTTTGGCATTAAAATATTAGCTTTTAATGTACAGAGTAATTTGACTACCAACTATTTCTATTTATTAACACCTATGCTTTCAGCTGGTGTGGGTATAGAGGACGGCACTGAAGCAAAACCTCACTCCAGACCTTACATGGTTTCTCTTCAGAAAAAAGGATGGCATAGCTGTGGTGGATTCCTCATTACTGAGCAGTTTGTCTTGACTGCTGCACATTGCTGGAAGAAAGGTGATGTCATCACAGTTGTGGTTGGCGCCCATGATTTGAGTGAAAATGAAATTTACAACTCCTTTAAAGTGACATCCTACATCCCGCATGAAGACTATAAACTGAATTCTGATCGCAATGACATCATGCTTTTAAAGCTAAATAAAAAAGTCAGACTGAGCAAGAATGTTGGACTGATATCATTACCAAAGAAAGGAGAAGATGTTAAAGCAGATACTGTGTGTAGTATTACTGGTTGGGGAAGACTGTGGAGAAAAGGCGCAAAGACTGATCGTCTAAGAGAGGCAGAGACAGTTATAATGAATGATGCAGAGTGTGAACGCAGATGGGAATCTGATTATGTGGCCTCAAAGATGATCTGTGCTTATGGCCATGGTGGAACTTGCAGTGGGGATTCTGGAGGTCCTTTGGTTTGTGGAGACACTGCTGTTGGTATCACATCTTTCAGTGACCGTTATCTCTGTAAGTCACGTTTGCTTCCTGATGTGTATACTAGGATTTCAGCATTTCTTCCATGGATCCACAACATAACTGGAAATGTTTAG

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004252 serine-type endopeptidase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008236 serine-type peptidase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050208-697 Predicted to enable serine-type endopeptidase activity. Predicted to act upstream of or within proteolysis. Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDART00000153630

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00042128 lncRNA upstream 769031 18560343 ~ 18596258 (+) False XLOC_020351
TCONS_00042127 lncRNA upstream 795901 18560343 ~ 18569388 (+) False XLOC_020351
TCONS_00042129 lncRNA upstream 795901 18565571 ~ 18569388 (+) True XLOC_020351
TCONS_00042126 lncRNA upstream 1061001 18254860 ~ 18304288 (+) False XLOC_020344
TCONS_00041895 lncRNA downstream 471918 19839275 ~ 19839592 (+) True XLOC_020382
TCONS_00042130 lncRNA downstream 644439 20011796 ~ 20050276 (+) True XLOC_020383
TCONS_00042131 lncRNA downstream 879115 20246472 ~ 20247476 (+) True XLOC_020390
TCONS_00042132 lncRNA downstream 880552 20247909 ~ 20259347 (+) True XLOC_020391
TCONS_00042133 lncRNA downstream 893874 20261231 ~ 20265527 (+) True XLOC_020392
TCONS_00040437 mRNA upstream 51551 19311411 ~ 19313738 (+) True XLOC_020366
TCONS_00040436 mRNA upstream 51690 19311411 ~ 19313599 (+) False XLOC_020366
TCONS_00040434 mRNA upstream 74028 19289970 ~ 19291261 (+) False XLOC_020365
TCONS_00040435 mRNA upstream 74110 19290199 ~ 19291179 (+) True XLOC_020365
TCONS_00040433 mRNA upstream 74154 19289970 ~ 19291135 (+) False XLOC_020365
TCONS_00040442 mRNA downstream 38160 19405517 ~ 19408101 (+) False XLOC_020368
TCONS_00040443 mRNA downstream 38162 19405519 ~ 19408034 (+) False XLOC_020368
TCONS_00040444 mRNA downstream 40174 19407531 ~ 19408101 (+) True XLOC_020368
TCONS_00040445 mRNA downstream 47723 19415080 ~ 19417750 (+) True XLOC_020369
TCONS_00040446 mRNA downstream 58300 19425657 ~ 19428807 (+) False XLOC_020362
TCONS_00040420 other upstream 127063 19237031 ~ 19238226 (+) True XLOC_020360
TCONS_00040385 other upstream 1084849 18247292 ~ 18280440 (+) False XLOC_020344
TCONS_00040386 other upstream 1084849 18253158 ~ 18280440 (+) False XLOC_020344
TCONS_00040387 other upstream 1110434 18254769 ~ 18254855 (+) False XLOC_020344
TCONS_00040381 other upstream 1189911 18166599 ~ 18175378 (+) False XLOC_020342
TCONS_00040469 other downstream 404341 19771698 ~ 19771812 (+) True XLOC_020380
TCONS_00040470 other downstream 425762 19793119 ~ 19793233 (+) True XLOC_020381
TCONS_00040472 other downstream 772168 20139525 ~ 20139592 (+) True XLOC_020385
TCONS_00040475 other downstream 784568 20151925 ~ 20151981 (+) True XLOC_020387
TCONS_00040488 other downstream 1726494 21093851 ~ 21093965 (+) True XLOC_020402